Wall clock time and date at job start Tue Mar 31 2020 07:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47442 * 2 1 4 4 C 1.52994 * 109.47426 * 175.48807 * 3 2 1 5 5 C 1.53001 * 109.47416 * 294.46028 * 4 3 2 6 6 N 1.46501 * 109.46535 * 295.48875 * 3 2 1 7 7 N 1.28438 * 125.20145 * 300.29073 * 6 3 2 8 8 C 1.30878 * 110.94710 * 180.14667 * 7 6 3 9 9 C 1.39642 * 107.87875 * 359.60535 * 8 7 6 10 10 C 1.36661 * 125.19279 * 119.99946 * 6 3 2 11 11 C 1.46997 * 126.89370 * 0.03766 * 10 6 3 12 12 O 1.21550 * 120.00094 * 180.02562 * 11 10 6 13 13 O 1.34822 * 120.00381 * 0.02562 * 11 10 6 14 14 C 1.45201 * 117.00061 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46962 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47027 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46801 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00230 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99845 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00059 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99771 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47214 * 89.99871 * 21 19 17 23 23 H 1.48497 * 109.46891 * 209.99535 * 21 19 17 24 24 H 1.48500 * 109.47226 * 329.99583 * 21 19 17 25 25 H 1.09001 * 109.47065 * 185.34490 * 1 2 3 26 26 H 1.09000 * 109.46960 * 305.34566 * 1 2 3 27 27 H 1.09001 * 109.46715 * 65.34498 * 1 2 3 28 28 H 1.09001 * 109.47303 * 239.99666 * 2 1 3 29 29 H 1.09004 * 109.46972 * 119.99633 * 2 1 3 30 30 H 1.09004 * 109.46815 * 55.48533 * 3 2 1 31 31 H 1.09005 * 109.47183 * 54.46005 * 4 3 2 32 32 H 1.09000 * 109.46904 * 174.45529 * 4 3 2 33 33 H 1.09001 * 109.46764 * 66.01236 * 5 4 3 34 34 H 1.08995 * 109.47045 * 186.00841 * 5 4 3 35 35 H 1.08996 * 109.46704 * 306.01310 * 5 4 3 36 36 H 1.08004 * 126.05408 * 179.87839 * 8 7 6 37 37 H 1.07997 * 127.32030 * 180.26471 * 9 8 7 38 38 H 1.09000 * 109.47089 * 299.99574 * 14 13 11 39 39 H 1.08997 * 109.47143 * 59.99923 * 14 13 11 40 40 H 1.09004 * 109.46968 * 299.99948 * 15 14 13 41 41 H 1.09004 * 109.47738 * 59.99560 * 15 14 13 42 42 H 1.09000 * 109.47035 * 299.99322 * 16 15 14 43 43 H 1.08999 * 109.47590 * 59.99879 * 16 15 14 44 44 H 0.96996 * 119.99585 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5658 1.4440 0.1135 5 6 3.9765 0.8818 1.4759 6 7 1.6424 2.1009 -1.2468 7 7 1.9747 1.7157 -2.4262 8 6 1.4692 2.5081 -3.3370 9 6 0.7315 3.4972 -2.6831 10 6 0.8565 3.2156 -1.3330 11 6 0.2634 3.9656 -0.2165 12 8 -0.4203 4.9459 -0.4380 13 8 0.4777 3.5663 1.0533 14 6 -0.1396 4.3542 2.1052 15 6 0.2139 3.7528 3.4669 16 6 -0.4370 4.5827 4.5753 17 6 -0.0893 3.9899 5.9165 18 1 0.5339 3.1097 5.9728 19 6 -0.5661 4.5721 7.0720 20 7 -0.2631 4.0546 8.2424 21 14 -1.6435 6.0950 6.9747 22 1 -3.0689 5.6881 6.8869 23 1 -1.4394 6.9241 8.1896 24 1 -1.2786 6.8834 5.7703 25 1 -0.3633 -1.0232 0.0957 26 1 -0.3633 0.5945 0.8382 27 1 -0.3633 0.4287 -0.9340 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6122 1.9791 0.8468 31 1 3.9896 0.8252 -0.6776 32 1 3.9364 2.4642 0.0146 33 1 3.6997 -0.1709 1.5329 34 1 5.0548 0.9812 1.5999 35 1 3.4674 1.4347 2.2654 36 1 1.5962 2.4112 -4.4051 37 1 0.1802 4.3087 -3.1345 38 1 0.2279 5.3791 2.0546 39 1 -1.2218 4.3493 1.9753 40 1 -0.1532 2.7277 3.5177 41 1 1.2962 3.7579 3.5966 42 1 -0.0702 5.6078 4.5246 43 1 -1.5192 4.5771 4.4455 44 1 -0.5982 4.4644 9.0552 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770189744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:09 Heat of formation + Delta-G solvation = -34.854573 kcal Electronic energy + Delta-G solvation = -24211.089116 eV Core-core repulsion = 20743.684358 eV Total energy + Delta-G solvation = -3467.404758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.80676 -40.10830 -37.26322 -36.53099 -34.17587 -32.13452 -31.98638 -31.51721 -31.13976 -27.75425 -26.57686 -24.43642 -23.12201 -22.72651 -22.36903 -20.89354 -20.48855 -19.71650 -18.14747 -17.12921 -16.75433 -16.55159 -15.99078 -15.73795 -15.04920 -14.56238 -14.37536 -14.27949 -14.11857 -13.89932 -13.60017 -13.21182 -12.80747 -12.58721 -12.48332 -12.36355 -12.15219 -12.03771 -11.74258 -11.41869 -11.26699 -11.16629 -11.12715 -10.91466 -10.72446 -10.63405 -10.55766 -10.10088 -9.91299 -9.79915 -9.40332 -9.31447 -9.21132 -8.61837 -6.12221 -4.11673 0.93067 2.19652 2.40746 2.56725 2.85908 3.26133 3.34253 3.37004 4.11901 4.38357 4.41896 4.51117 4.63103 4.84044 4.98269 5.06938 5.09189 5.15917 5.20987 5.26410 5.34895 5.36088 5.41770 5.47356 5.59741 5.61480 5.70416 5.75092 5.79043 5.84997 5.90029 6.06192 6.06680 6.18279 6.27946 6.29611 6.50284 6.57370 6.68379 7.12297 7.24491 7.58374 7.68536 7.89131 8.43424 8.91342 9.49231 11.00822 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.003766 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.008664 B = 7434.140473 C = 8353.041017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.132 3.868 4 C -0.128 4.128 5 C -0.153 4.153 6 N -0.248 5.248 7 N -0.263 5.263 8 C -0.013 4.013 9 C -0.154 4.154 10 C -0.028 4.028 11 C 0.536 3.464 12 O -0.494 6.494 13 O -0.357 6.357 14 C 0.065 3.935 15 C -0.101 4.101 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 -6.341 -21.043 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.211 4.211 6 N -0.039 5.039 7 N -0.097 5.097 8 C -0.188 4.188 9 C -0.183 4.183 10 C -0.153 4.153 11 C 0.379 3.621 12 O -0.380 6.380 13 O -0.274 6.274 14 C -0.008 4.008 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.205 0.795 37 H 0.182 0.818 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.712 -6.999 -20.563 22.460 hybrid contribution -1.213 1.704 -0.053 2.092 sum 4.500 -5.296 -20.616 21.755 Atomic orbital electron populations 1.21798 0.95022 1.02337 1.02184 1.21935 0.96940 0.94013 1.04001 1.22383 0.97096 0.95266 0.81950 1.21826 0.92557 1.02658 0.99572 1.21806 1.01972 1.01426 0.95875 1.46222 1.33193 1.18407 1.06085 1.73104 1.21512 1.24889 0.90185 1.23579 1.01033 0.94487 0.99658 1.22178 1.03720 1.02376 0.90021 1.20793 1.05397 0.94960 0.94157 1.19685 0.77997 0.82108 0.82317 1.90887 1.36324 1.25432 1.85322 1.86509 1.69586 1.56079 1.15223 1.23619 0.97649 0.94674 0.84820 1.21585 1.02004 1.00744 0.89545 1.19520 0.95674 0.95680 0.93910 1.21023 1.32559 1.13976 0.88499 0.90797 1.25008 0.95895 0.97104 0.95318 1.69900 1.45602 1.40797 0.97591 0.86799 0.81199 0.83602 0.77845 1.20173 1.21243 1.18969 0.92008 0.91817 0.93239 0.90478 0.89125 0.84750 0.90560 0.91322 0.91997 0.91838 0.91461 0.79513 0.81809 0.91147 0.91142 0.91487 0.91463 0.96224 0.96658 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.73 37.16 0.36 -1.26 16 2 C -0.13 -1.25 5.35 -26.73 -0.14 -1.39 16 3 C 0.13 1.44 2.43 -67.93 -0.17 1.27 16 4 C -0.13 -1.23 5.58 -26.73 -0.15 -1.38 16 5 C -0.15 -1.32 9.53 37.16 0.35 -0.96 16 6 N -0.25 -3.01 2.62 -50.71 -0.13 -3.14 16 7 N -0.26 -3.08 11.51 30.58 0.35 -2.72 16 8 C -0.01 -0.13 12.03 -17.43 -0.21 -0.34 16 9 C -0.15 -1.75 10.85 -38.97 -0.42 -2.17 16 10 C -0.03 -0.37 6.96 -82.07 -0.57 -0.94 16 11 C 0.54 8.18 7.94 34.28 0.27 8.46 16 12 O -0.49 -8.58 16.71 -19.30 -0.32 -8.90 16 13 O -0.36 -5.37 7.36 -40.83 -0.30 -5.67 16 14 C 0.06 1.06 5.48 37.16 0.20 1.26 16 15 C -0.10 -1.86 5.53 -26.73 -0.15 -2.01 16 16 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 17 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 21 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.57 7.89 -51.93 -0.41 0.16 16 28 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 29 H 0.09 0.74 6.52 -51.93 -0.34 0.40 16 30 H 0.14 1.63 5.07 -51.93 -0.26 1.36 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.47 6.78 -51.93 -0.35 0.12 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 43 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -31.17 363.87 -7.18 -38.35 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.21 Total: -0.91 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.16 Total: -12.67 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.99 Total: -32.25 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.62 Total: -14.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.17 -7.18 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770189744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.500 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds