Wall clock time and date at job start Tue Mar 31 2020 07:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47442 * 2 1 4 4 C 1.52994 * 109.47426 * 175.48807 * 3 2 1 5 5 C 1.53001 * 109.47416 * 294.46028 * 4 3 2 6 6 N 1.46501 * 109.46535 * 295.48875 * 3 2 1 7 7 N 1.28438 * 125.20145 * 300.29073 * 6 3 2 8 8 C 1.30878 * 110.94710 * 180.14667 * 7 6 3 9 9 C 1.39642 * 107.87875 * 359.60535 * 8 7 6 10 10 C 1.36661 * 125.19279 * 119.99946 * 6 3 2 11 11 C 1.46997 * 126.89370 * 0.03766 * 10 6 3 12 12 O 1.21550 * 120.00094 * 180.02562 * 11 10 6 13 13 O 1.34822 * 120.00381 * 0.02562 * 11 10 6 14 14 C 1.45201 * 117.00061 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46962 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47027 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46801 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00230 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99845 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00059 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99771 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47214 * 89.99871 * 21 19 17 23 23 H 1.48497 * 109.46891 * 209.99535 * 21 19 17 24 24 H 1.48500 * 109.47226 * 329.99583 * 21 19 17 25 25 H 1.09001 * 109.47065 * 185.34490 * 1 2 3 26 26 H 1.09000 * 109.46960 * 305.34566 * 1 2 3 27 27 H 1.09001 * 109.46715 * 65.34498 * 1 2 3 28 28 H 1.09001 * 109.47303 * 239.99666 * 2 1 3 29 29 H 1.09004 * 109.46972 * 119.99633 * 2 1 3 30 30 H 1.09004 * 109.46815 * 55.48533 * 3 2 1 31 31 H 1.09005 * 109.47183 * 54.46005 * 4 3 2 32 32 H 1.09000 * 109.46904 * 174.45529 * 4 3 2 33 33 H 1.09001 * 109.46764 * 66.01236 * 5 4 3 34 34 H 1.08995 * 109.47045 * 186.00841 * 5 4 3 35 35 H 1.08996 * 109.46704 * 306.01310 * 5 4 3 36 36 H 1.08004 * 126.05408 * 179.87839 * 8 7 6 37 37 H 1.07997 * 127.32030 * 180.26471 * 9 8 7 38 38 H 1.09000 * 109.47089 * 299.99574 * 14 13 11 39 39 H 1.08997 * 109.47143 * 59.99923 * 14 13 11 40 40 H 1.09004 * 109.46968 * 299.99948 * 15 14 13 41 41 H 1.09004 * 109.47738 * 59.99560 * 15 14 13 42 42 H 1.09000 * 109.47035 * 299.99322 * 16 15 14 43 43 H 1.08999 * 109.47590 * 59.99879 * 16 15 14 44 44 H 0.96996 * 119.99585 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5658 1.4440 0.1135 5 6 3.9765 0.8818 1.4759 6 7 1.6424 2.1009 -1.2468 7 7 1.9747 1.7157 -2.4262 8 6 1.4692 2.5081 -3.3370 9 6 0.7315 3.4972 -2.6831 10 6 0.8565 3.2156 -1.3330 11 6 0.2634 3.9656 -0.2165 12 8 -0.4203 4.9459 -0.4380 13 8 0.4777 3.5663 1.0533 14 6 -0.1396 4.3542 2.1052 15 6 0.2139 3.7528 3.4669 16 6 -0.4370 4.5827 4.5753 17 6 -0.0893 3.9899 5.9165 18 1 0.5339 3.1097 5.9728 19 6 -0.5661 4.5721 7.0720 20 7 -0.2631 4.0546 8.2424 21 14 -1.6435 6.0950 6.9747 22 1 -3.0689 5.6881 6.8869 23 1 -1.4394 6.9241 8.1896 24 1 -1.2786 6.8834 5.7703 25 1 -0.3633 -1.0232 0.0957 26 1 -0.3633 0.5945 0.8382 27 1 -0.3633 0.4287 -0.9340 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6122 1.9791 0.8468 31 1 3.9896 0.8252 -0.6776 32 1 3.9364 2.4642 0.0146 33 1 3.6997 -0.1709 1.5329 34 1 5.0548 0.9812 1.5999 35 1 3.4674 1.4347 2.2654 36 1 1.5962 2.4112 -4.4051 37 1 0.1802 4.3087 -3.1345 38 1 0.2279 5.3791 2.0546 39 1 -1.2218 4.3493 1.9753 40 1 -0.1532 2.7277 3.5177 41 1 1.2962 3.7579 3.5966 42 1 -0.0702 5.6078 4.5246 43 1 -1.5192 4.5771 4.4455 44 1 -0.5982 4.4644 9.0552 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770189744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:08 Heat of formation + Delta-G solvation = -51.051315 kcal Electronic energy + Delta-G solvation = -24211.791459 eV Core-core repulsion = 20743.684358 eV Total energy + Delta-G solvation = -3468.107101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.70018 -41.32908 -38.22585 -37.66784 -35.95910 -33.92053 -32.87314 -32.40771 -32.14307 -29.47881 -27.39354 -25.81451 -24.16313 -23.86455 -23.29262 -22.16591 -21.77794 -20.79725 -19.16890 -18.97919 -17.97943 -17.92694 -16.97909 -16.72288 -16.30231 -15.87375 -15.68065 -15.35927 -15.08069 -14.88368 -14.79371 -14.46598 -14.24286 -13.99584 -13.82700 -13.43421 -13.10516 -12.92642 -12.89326 -12.68316 -12.55605 -12.42952 -12.11678 -12.06995 -11.95315 -11.80633 -11.71913 -11.64503 -11.48067 -11.44745 -11.36331 -10.77386 -10.34370 -10.06297 -8.30099 -6.34640 -0.10451 1.22940 1.36679 1.38415 1.48326 1.49643 1.51680 1.83583 2.35357 3.05477 3.22315 3.41891 3.71543 3.84144 3.93950 3.97146 4.04533 4.16139 4.21551 4.32191 4.34327 4.38522 4.43556 4.54806 4.68834 4.70703 4.71981 4.82353 4.85968 4.94420 4.94872 5.01943 5.07020 5.13420 5.15505 5.25779 5.35062 5.43174 5.47863 5.48617 5.61811 5.71726 6.25413 6.41963 6.73190 6.99850 7.29936 8.86224 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.003766 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.008664 B = 7434.140473 C = 8353.041017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.127 3.873 4 C -0.120 4.120 5 C -0.151 4.151 6 N -0.250 5.250 7 N -0.271 5.271 8 C -0.005 4.005 9 C -0.149 4.149 10 C -0.056 4.056 11 C 0.539 3.461 12 O -0.519 6.519 13 O -0.352 6.352 14 C 0.073 3.927 15 C -0.090 4.090 16 C -0.010 4.010 17 C -0.531 4.531 18 H 0.038 0.962 19 C 0.007 3.993 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.246 1.246 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.225 0.775 37 H 0.179 0.821 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -6.073 -23.231 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.028 3.972 4 C -0.158 4.158 5 C -0.209 4.209 6 N -0.041 5.041 7 N -0.105 5.105 8 C -0.179 4.179 9 C -0.178 4.178 10 C -0.181 4.181 11 C 0.383 3.617 12 O -0.407 6.407 13 O -0.269 6.269 14 C 0.000 4.000 15 C -0.128 4.128 16 C -0.047 4.047 17 C -0.569 4.569 18 H 0.057 0.943 19 C -0.190 4.190 20 N -0.589 5.589 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.170 1.170 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.241 0.759 37 H 0.196 0.804 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.559 -6.746 -22.770 24.390 hybrid contribution -1.091 1.519 0.568 1.955 sum 4.467 -5.227 -22.202 23.242 Atomic orbital electron populations 1.21765 0.95699 1.02752 1.00822 1.21924 0.96226 0.93272 1.04872 1.22454 0.97789 0.95686 0.81258 1.21767 0.91642 1.02176 1.00259 1.21803 1.02365 1.01920 0.94792 1.46310 1.33109 1.18158 1.06509 1.73112 1.21763 1.25350 0.90281 1.24206 0.99514 0.93147 1.01043 1.22517 1.03223 1.02745 0.89306 1.20801 1.07041 0.96068 0.94202 1.19979 0.77472 0.81854 0.82376 1.90866 1.37696 1.26636 1.85542 1.86526 1.69375 1.55695 1.15312 1.23337 0.97922 0.94571 0.84155 1.21323 1.01550 1.00131 0.89765 1.19452 0.96457 0.96134 0.92703 1.21379 1.31522 1.12945 0.91038 0.94329 1.25957 0.97563 1.00673 0.94836 1.70050 1.47473 1.42851 0.98534 0.85726 0.79362 0.79498 0.78514 1.19163 1.21045 1.16965 0.90675 0.93155 0.94562 0.90049 0.87672 0.86301 0.89913 0.92432 0.90704 0.90988 0.92863 0.75863 0.80412 0.90829 0.90725 0.91492 0.91544 0.95692 0.95786 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.73 71.98 0.70 -2.36 16 2 C -0.13 -2.23 5.35 30.59 0.16 -2.07 16 3 C 0.13 2.68 2.43 44.99 0.11 2.79 16 4 C -0.12 -2.20 5.58 30.59 0.17 -2.03 16 5 C -0.15 -2.47 9.53 71.98 0.69 -1.78 16 6 N -0.25 -5.78 2.62 -314.34 -0.82 -6.61 16 7 N -0.27 -5.80 11.51 -57.15 -0.66 -6.46 16 8 C -0.01 -0.09 12.03 85.17 1.02 0.93 16 9 C -0.15 -3.10 10.85 22.67 0.25 -2.85 16 10 C -0.06 -1.45 6.96 40.75 0.28 -1.17 16 11 C 0.54 16.19 7.94 70.12 0.56 16.75 16 12 O -0.52 -17.75 16.71 19.67 0.33 -17.43 16 13 O -0.35 -10.50 7.36 -57.34 -0.42 -10.92 16 14 C 0.07 2.32 5.48 71.98 0.39 2.71 16 15 C -0.09 -3.29 5.53 30.59 0.17 -3.12 16 16 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 17 C -0.53 -29.62 9.66 25.60 0.25 -29.37 16 18 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 19 C 0.01 0.39 5.47 84.66 0.46 0.86 16 20 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 21 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.80 7.89 -2.39 -0.02 0.79 16 28 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 29 H 0.11 1.55 6.52 -2.38 -0.02 1.54 16 30 H 0.12 2.87 5.07 -2.39 -0.01 2.86 16 31 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.01 6.78 -2.39 -0.02 1.00 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.22 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.18 3.09 8.06 -2.91 -0.02 3.06 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 42 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 43 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -67.39 363.87 6.86 -60.54 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.91 Total: 14.87 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.34 Total: -21.03 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.18 Total: -71.24 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.09 Total: -28.35 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -67.39 6.86 -60.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770189744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.484 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds