Wall clock time and date at job start Tue Mar 31 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47021 * 2 1 4 4 C 1.53002 * 109.46820 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.47035 * 179.97438 * 4 3 2 6 6 N 1.39921 * 125.74089 * 269.97594 * 5 4 3 7 7 C 1.30434 * 108.91497 * 179.77121 * 6 5 4 8 8 C 1.41343 * 108.01530 * 0.38643 * 7 6 5 9 9 C 1.47286 * 126.43032 * 179.87736 * 8 7 6 10 10 O 1.21521 * 120.00041 * 179.68877 * 9 8 7 11 11 O 1.34754 * 119.99967 * 359.68571 * 9 8 7 12 12 C 1.45198 * 117.00242 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47372 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47123 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47007 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99896 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99998 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47368 * 89.99891 * 19 17 15 21 21 H 1.48506 * 109.47340 * 210.00188 * 19 17 15 22 22 H 1.48502 * 109.47190 * 329.99636 * 19 17 15 23 23 C 1.34217 * 125.73955 * 90.00178 * 5 4 3 24 24 C 1.50704 * 126.30078 * 359.94254 * 23 5 4 25 25 H 1.08995 * 109.46885 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46836 * 300.00324 * 1 2 3 27 27 H 1.09000 * 109.46852 * 59.99844 * 1 2 3 28 28 H 1.09001 * 109.47273 * 239.99518 * 2 1 3 29 29 H 1.09000 * 109.46852 * 120.00156 * 2 1 3 30 30 H 1.09001 * 109.47175 * 60.00365 * 3 2 1 31 31 H 1.09000 * 109.47435 * 299.99799 * 3 2 1 32 32 H 1.08998 * 109.47410 * 60.00449 * 4 3 2 33 33 H 1.09002 * 109.47341 * 299.99726 * 4 3 2 34 34 H 1.08008 * 125.99499 * 180.22812 * 7 6 5 35 35 H 1.08998 * 109.47176 * 300.00214 * 12 11 9 36 36 H 1.08994 * 109.46872 * 60.00181 * 12 11 9 37 37 H 1.08998 * 109.47020 * 300.00157 * 13 12 11 38 38 H 1.09006 * 109.46668 * 60.00008 * 13 12 11 39 39 H 1.08998 * 109.47405 * 300.00049 * 14 13 12 40 40 H 1.08994 * 109.46892 * 60.00168 * 14 13 12 41 41 H 0.97003 * 120.00039 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47056 * 270.01840 * 24 23 5 43 43 H 1.08994 * 109.46631 * 30.01934 * 24 23 5 44 44 H 1.08998 * 109.46883 * 150.01455 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.3318 3.5934 -1.1360 7 6 4.7430 4.7724 -0.7590 8 6 4.7570 4.7993 0.6541 9 6 5.1571 5.9341 1.5035 10 8 5.1187 5.8305 2.7136 11 8 5.5658 7.0873 0.9386 12 6 5.9445 8.1634 1.8367 13 6 6.3763 9.3823 1.0189 14 6 6.7747 10.5164 1.9653 15 6 7.1993 11.7171 1.1597 16 1 7.1859 11.6756 0.0806 17 6 7.6049 12.8687 1.8003 18 7 7.6207 12.9194 3.1144 19 14 8.1320 14.3568 0.8018 20 1 6.9515 15.2174 0.5350 21 1 9.1461 15.1298 1.5630 22 1 8.7175 13.9064 -0.4864 23 6 4.3193 3.5635 1.0891 24 6 4.1627 3.1266 2.5229 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.0259 5.5849 -1.4121 35 1 5.0936 8.4299 2.4636 36 1 6.7717 7.8366 2.4668 37 1 7.2271 9.1161 0.3917 38 1 5.5487 9.7088 0.3891 39 1 5.9236 10.7824 2.5922 40 1 7.6020 10.1900 2.5954 41 1 7.9057 13.7297 3.5651 42 1 3.1562 3.3644 2.8673 43 1 4.3270 2.0515 2.5951 44 1 4.8917 3.6480 3.1432 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772335559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:53 Heat of formation + Delta-G solvation = -47.985343 kcal Electronic energy + Delta-G solvation = -22565.760205 eV Core-core repulsion = 19097.786054 eV Total energy + Delta-G solvation = -3467.974151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71677 -39.63297 -36.54517 -36.21066 -33.93710 -33.38936 -32.21640 -31.62173 -29.21848 -27.83241 -26.83083 -24.75593 -23.54452 -22.45554 -21.82341 -20.74448 -20.30496 -19.53685 -17.70767 -16.60694 -16.35090 -16.25786 -15.96993 -15.67092 -15.41400 -14.62264 -14.44114 -14.26349 -13.77664 -13.72577 -13.38049 -13.24996 -13.06044 -12.92596 -12.45905 -12.15704 -12.06927 -11.94209 -11.89352 -11.80391 -11.65776 -11.21148 -11.02138 -10.93276 -10.60644 -10.54937 -10.27943 -10.18673 -9.64912 -9.64415 -9.45777 -9.12099 -8.85964 -8.35193 -6.00107 -4.02779 1.22370 1.97329 2.00483 3.11741 3.29179 3.33620 3.39670 3.43535 4.06909 4.14561 4.28563 4.43456 4.46638 4.51038 4.68598 4.74957 4.84681 4.95165 5.06445 5.17285 5.21135 5.25585 5.33751 5.35883 5.41028 5.55497 5.61509 5.65442 5.67606 5.71917 5.74805 5.80035 6.10409 6.25711 6.55223 6.61686 6.63799 6.94639 7.06296 7.34224 7.65020 7.76598 7.98647 8.13990 8.40412 9.03578 9.61247 11.11337 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.002138 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.511107 B =13094.461616 C =13392.052920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.128 3.872 5 N -0.360 5.360 6 N -0.302 5.302 7 C 0.107 3.893 8 C -0.281 4.281 9 C 0.540 3.460 10 O -0.524 6.524 11 O -0.354 6.354 12 C 0.071 3.929 13 C -0.109 4.109 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.162 3.838 24 C -0.102 4.102 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.199 0.801 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.593 -28.245 -5.042 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.177 4.177 4 C 0.007 3.993 5 N -0.139 5.139 6 N -0.120 5.120 7 C -0.081 4.081 8 C -0.294 4.294 9 C 0.385 3.615 10 O -0.415 6.415 11 O -0.270 6.270 12 C -0.002 4.002 13 C -0.147 4.147 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.030 3.970 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.216 0.784 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.847 -29.017 -5.563 31.833 hybrid contribution 0.499 1.505 0.292 1.612 sum -11.349 -27.512 -5.271 30.224 Atomic orbital electron populations 1.21755 0.95187 1.01927 1.02180 1.21445 0.96586 0.95346 1.02488 1.22051 0.93453 0.98327 1.03838 1.21885 0.95163 0.77358 1.04900 1.48523 1.49659 1.12309 1.03368 1.77236 1.23124 1.04515 1.07139 1.24241 0.94881 0.95162 0.93838 1.19166 1.22084 0.94571 0.93552 1.19880 0.73634 0.82019 0.85922 1.90774 1.52334 1.83058 1.15346 1.86528 1.75953 1.22297 1.42229 1.23463 0.99911 0.84562 0.92240 1.21758 1.00786 0.92615 0.99504 1.19052 0.96874 0.91155 0.94281 1.21188 1.44180 0.97358 0.93144 0.92420 1.25030 0.95709 0.98851 0.94921 1.69967 1.47916 1.28099 1.07401 0.86550 0.78381 0.82694 0.80113 1.20648 1.21229 1.19824 1.21481 0.93785 0.90447 0.91292 1.20740 1.05254 1.01723 0.88289 0.92409 0.92541 0.92544 0.91486 0.91552 0.91092 0.90620 0.88179 0.88579 0.78408 0.91585 0.91575 0.92145 0.92156 0.96235 0.96219 0.92941 0.89288 0.90959 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.47 5.93 -26.73 -0.16 -0.62 16 3 C -0.14 -0.76 5.54 -26.73 -0.15 -0.91 16 4 C 0.13 0.78 6.21 -4.04 -0.03 0.75 16 5 N -0.36 -3.68 3.58 -56.58 -0.20 -3.88 16 6 N -0.30 -3.73 12.50 30.87 0.39 -3.34 16 7 C 0.11 1.35 11.87 -16.97 -0.20 1.15 16 8 C -0.28 -3.90 6.13 -105.08 -0.64 -4.54 16 9 C 0.54 8.96 7.95 34.41 0.27 9.24 16 10 O -0.52 -9.50 14.63 -19.28 -0.28 -9.78 16 11 O -0.35 -6.23 10.07 -40.64 -0.41 -6.64 16 12 C 0.07 1.36 5.48 37.16 0.20 1.56 16 13 C -0.11 -2.31 5.53 -26.73 -0.15 -2.45 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.16 1.84 7.01 -81.59 -0.57 1.27 16 24 C -0.10 -0.88 9.57 36.01 0.34 -0.54 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.38 7.02 -51.93 -0.36 0.01 16 34 H 0.20 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.41 7.05 -51.93 -0.37 0.04 16 44 H 0.11 1.15 6.51 -51.93 -0.34 0.81 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -33.30 372.39 -7.81 -41.11 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -7.37 Total: -5.01 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.26 Total: -8.51 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.92 Total: -33.50 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.69 Total: -16.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.30 -7.81 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772335559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.876 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds