Wall clock time and date at job start Tue Mar 31 2020 07:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47021 * 2 1 4 4 C 1.53002 * 109.46820 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.47035 * 179.97438 * 4 3 2 6 6 N 1.39921 * 125.74089 * 269.97594 * 5 4 3 7 7 C 1.30434 * 108.91497 * 179.77121 * 6 5 4 8 8 C 1.41343 * 108.01530 * 0.38643 * 7 6 5 9 9 C 1.47286 * 126.43032 * 179.87736 * 8 7 6 10 10 O 1.21521 * 120.00041 * 179.68877 * 9 8 7 11 11 O 1.34754 * 119.99967 * 359.68571 * 9 8 7 12 12 C 1.45198 * 117.00242 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47372 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47123 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47007 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99896 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99998 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47368 * 89.99891 * 19 17 15 21 21 H 1.48506 * 109.47340 * 210.00188 * 19 17 15 22 22 H 1.48502 * 109.47190 * 329.99636 * 19 17 15 23 23 C 1.34217 * 125.73955 * 90.00178 * 5 4 3 24 24 C 1.50704 * 126.30078 * 359.94254 * 23 5 4 25 25 H 1.08995 * 109.46885 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46836 * 300.00324 * 1 2 3 27 27 H 1.09000 * 109.46852 * 59.99844 * 1 2 3 28 28 H 1.09001 * 109.47273 * 239.99518 * 2 1 3 29 29 H 1.09000 * 109.46852 * 120.00156 * 2 1 3 30 30 H 1.09001 * 109.47175 * 60.00365 * 3 2 1 31 31 H 1.09000 * 109.47435 * 299.99799 * 3 2 1 32 32 H 1.08998 * 109.47410 * 60.00449 * 4 3 2 33 33 H 1.09002 * 109.47341 * 299.99726 * 4 3 2 34 34 H 1.08008 * 125.99499 * 180.22812 * 7 6 5 35 35 H 1.08998 * 109.47176 * 300.00214 * 12 11 9 36 36 H 1.08994 * 109.46872 * 60.00181 * 12 11 9 37 37 H 1.08998 * 109.47020 * 300.00157 * 13 12 11 38 38 H 1.09006 * 109.46668 * 60.00008 * 13 12 11 39 39 H 1.08998 * 109.47405 * 300.00049 * 14 13 12 40 40 H 1.08994 * 109.46892 * 60.00168 * 14 13 12 41 41 H 0.97003 * 120.00039 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47056 * 270.01840 * 24 23 5 43 43 H 1.08994 * 109.46631 * 30.01934 * 24 23 5 44 44 H 1.08998 * 109.46883 * 150.01455 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.3318 3.5934 -1.1360 7 6 4.7430 4.7724 -0.7590 8 6 4.7570 4.7993 0.6541 9 6 5.1571 5.9341 1.5035 10 8 5.1187 5.8305 2.7136 11 8 5.5658 7.0873 0.9386 12 6 5.9445 8.1634 1.8367 13 6 6.3763 9.3823 1.0189 14 6 6.7747 10.5164 1.9653 15 6 7.1993 11.7171 1.1597 16 1 7.1859 11.6756 0.0806 17 6 7.6049 12.8687 1.8003 18 7 7.6207 12.9194 3.1144 19 14 8.1320 14.3568 0.8018 20 1 6.9515 15.2174 0.5350 21 1 9.1461 15.1298 1.5630 22 1 8.7175 13.9064 -0.4864 23 6 4.3193 3.5635 1.0891 24 6 4.1627 3.1266 2.5229 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.0259 5.5849 -1.4121 35 1 5.0936 8.4299 2.4636 36 1 6.7717 7.8366 2.4668 37 1 7.2271 9.1161 0.3917 38 1 5.5487 9.7088 0.3891 39 1 5.9236 10.7824 2.5922 40 1 7.6020 10.1900 2.5954 41 1 7.9057 13.7297 3.5651 42 1 3.1562 3.3644 2.8673 43 1 4.3270 2.0515 2.5951 44 1 4.8917 3.6480 3.1432 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772335559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:52 Heat of formation + Delta-G solvation = -66.019039 kcal Electronic energy + Delta-G solvation = -22566.542205 eV Core-core repulsion = 19097.786054 eV Total energy + Delta-G solvation = -3468.756150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.63327 -40.96249 -37.68199 -36.99314 -35.89352 -34.11677 -33.63472 -32.98087 -30.00064 -28.99644 -28.30108 -25.67604 -24.93382 -23.75133 -22.21858 -22.12332 -21.72755 -20.50508 -18.86112 -18.52106 -17.61079 -17.48653 -16.93621 -16.54527 -16.47558 -16.19965 -15.49631 -15.36894 -14.78004 -14.60855 -14.34882 -14.09562 -13.95913 -13.81281 -13.74296 -13.68924 -13.48128 -13.19902 -12.81008 -12.49627 -12.40426 -12.39463 -12.33624 -12.02236 -12.02044 -11.94927 -11.66089 -11.52522 -11.35879 -11.33989 -11.18634 -10.55498 -10.46226 -9.83125 -8.20075 -6.31348 0.25042 0.96948 1.19789 1.42494 1.44024 1.55250 1.84154 2.12484 2.42994 3.13665 3.41998 3.46754 3.75607 3.82558 3.87028 4.05234 4.05417 4.11926 4.12563 4.29348 4.40022 4.41471 4.47752 4.58093 4.62352 4.73859 4.82883 4.83809 4.90124 4.91932 4.99823 5.07231 5.11437 5.22734 5.27612 5.34123 5.42763 5.47527 5.57777 5.66834 5.80677 5.82318 6.21440 6.42383 6.81414 6.85518 7.37855 8.92094 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039343 B = 0.002138 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.511107 B =13094.461616 C =13392.052920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.350 5.350 6 N -0.317 5.317 7 C 0.104 3.896 8 C -0.315 4.315 9 C 0.539 3.461 10 O -0.546 6.546 11 O -0.355 6.355 12 C 0.082 3.918 13 C -0.094 4.094 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.174 3.826 24 C -0.101 4.101 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.209 0.791 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H -0.003 1.003 40 H -0.002 1.002 41 H 0.264 0.736 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.936 -29.907 -6.036 32.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.170 4.170 4 C -0.001 4.001 5 N -0.129 5.129 6 N -0.136 5.136 7 C -0.084 4.084 8 C -0.328 4.328 9 C 0.386 3.614 10 O -0.438 6.438 11 O -0.271 6.271 12 C 0.008 3.992 13 C -0.131 4.131 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.186 1.186 23 C 0.039 3.961 24 C -0.158 4.158 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.207 -30.718 -6.587 33.705 hybrid contribution 0.538 1.877 0.616 2.047 sum -11.668 -28.841 -5.971 31.680 Atomic orbital electron populations 1.21780 0.95649 1.02249 1.01659 1.21424 0.96108 0.94200 1.03584 1.21979 0.92956 0.99301 1.02739 1.22339 0.95498 0.75352 1.06928 1.48878 1.48318 1.13245 1.02434 1.77196 1.23440 1.04607 1.08315 1.24439 0.94707 0.95692 0.93565 1.19176 1.24895 0.94797 0.93919 1.20326 0.72999 0.81982 0.86107 1.90758 1.53511 1.83285 1.16250 1.86506 1.76335 1.22521 1.41746 1.23105 0.99666 0.84591 0.91829 1.21456 1.01197 0.91937 0.98538 1.18937 0.95150 0.92561 0.94507 1.21633 1.44290 0.98396 0.93781 0.91706 1.26008 0.95591 1.02280 0.96062 1.70101 1.48769 1.29174 1.09249 0.85387 0.78150 0.78453 0.78684 1.19751 1.20779 1.18627 1.21847 0.91933 0.89635 0.92653 1.20832 1.05209 1.03823 0.85981 0.91672 0.92807 0.93386 0.90884 0.89936 0.91397 0.92577 0.87251 0.85509 0.77395 0.91938 0.91902 0.91505 0.91515 0.98436 0.98402 0.92708 0.88142 0.87217 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.91 71.98 0.71 -0.35 16 2 C -0.12 -0.59 5.93 30.59 0.18 -0.41 16 3 C -0.13 -1.17 5.54 30.59 0.17 -1.00 16 4 C 0.12 1.10 6.21 86.38 0.54 1.63 16 5 N -0.35 -6.50 3.58 -332.93 -1.19 -7.69 16 6 N -0.32 -7.48 12.50 -56.24 -0.70 -8.19 16 7 C 0.10 2.57 11.87 85.66 1.02 3.58 16 8 C -0.32 -8.62 6.13 -20.16 -0.12 -8.74 16 9 C 0.54 18.01 7.95 70.20 0.56 18.57 16 10 O -0.55 -20.04 14.63 19.77 0.29 -19.75 16 11 O -0.35 -12.57 10.07 -56.65 -0.57 -13.14 16 12 C 0.08 3.16 5.48 71.98 0.39 3.56 16 13 C -0.09 -4.00 5.53 30.59 0.17 -3.83 16 14 C 0.03 1.37 4.97 29.85 0.15 1.52 16 15 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 16 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 17 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 18 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 19 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.17 3.68 7.01 42.17 0.30 3.98 16 24 C -0.10 -1.52 9.57 71.24 0.68 -0.84 16 25 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.13 0.44 7.02 -2.39 -0.02 0.43 16 34 H 0.21 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 0.81 7.05 -2.39 -0.02 0.79 16 44 H 0.09 1.77 6.51 -2.39 -0.02 1.76 16 Total: -1.00 -72.34 372.39 6.54 -65.80 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.96 Total: 6.25 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 5.44 Total: -12.89 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.61 Total: -72.81 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.28 Total: -32.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.34 6.54 -65.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772335559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.215 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds