Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.65918 * 2 1 4 4 C 1.54226 * 110.61010 * 122.93029 * 2 1 3 5 5 C 1.51311 * 103.55422 * 118.51923 * 4 2 1 6 6 O 1.21233 * 125.39199 * 179.97438 * 5 4 2 7 7 N 1.33872 * 109.20933 * 0.24888 * 5 4 2 8 8 C 1.46497 * 122.76512 * 179.75759 * 7 5 4 9 9 N 1.46901 * 109.47155 * 90.01939 * 8 7 5 10 10 C 1.46851 * 111.00076 * 279.21070 * 9 8 7 11 11 C 1.53043 * 109.52081 * 174.15799 * 10 9 8 12 12 C 1.53117 * 109.27394 * 59.18276 * 11 10 9 13 13 C 1.50702 * 109.57359 * 182.40265 * 12 11 10 14 14 H 1.07998 * 119.99814 * 119.70910 * 13 12 11 15 15 C 1.37879 * 120.00208 * 299.72227 * 13 12 11 16 16 N 1.31509 * 120.00000 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00065 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47039 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47122 * 119.99580 * 17 15 13 20 20 H 1.48496 * 109.47013 * 239.99442 * 17 15 13 21 21 C 1.53116 * 109.16502 * 302.34254 * 12 11 10 22 22 C 1.46845 * 110.99936 * 155.00240 * 9 8 7 23 23 C 1.33877 * 114.47412 * 359.55700 * 7 5 4 24 24 O 1.21223 * 125.39865 * 180.17267 * 23 7 5 25 25 H 1.09001 * 109.47428 * 297.06236 * 1 2 3 26 26 H 1.09003 * 109.47310 * 57.06854 * 1 2 3 27 27 H 1.09001 * 109.46636 * 177.06479 * 1 2 3 28 28 H 1.09001 * 109.47567 * 182.93375 * 3 2 1 29 29 H 1.09001 * 109.47431 * 302.93321 * 3 2 1 30 30 H 1.09003 * 109.47131 * 62.93139 * 3 2 1 31 31 H 1.08999 * 110.60476 * 0.02562 * 4 2 1 32 32 H 1.08997 * 110.60827 * 237.04086 * 4 2 1 33 33 H 1.08996 * 109.47071 * 210.02127 * 8 7 5 34 34 H 1.09007 * 109.47025 * 330.02277 * 8 7 5 35 35 H 1.08995 * 109.46263 * 294.17686 * 10 9 8 36 36 H 1.08997 * 109.46117 * 54.14979 * 10 9 8 37 37 H 1.08995 * 109.50323 * 299.23865 * 11 10 9 38 38 H 1.09006 * 109.53236 * 179.13771 * 11 10 9 39 39 H 1.09002 * 109.52272 * 62.24994 * 12 11 10 40 40 H 0.96998 * 120.00385 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.49778 * 297.71479 * 21 12 11 42 42 H 1.09002 * 109.53908 * 177.62283 * 21 12 11 43 43 H 1.08996 * 109.46316 * 305.85325 * 22 9 8 44 44 H 1.09005 * 109.46544 * 65.83820 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0729 -0.7847 1.2116 5 6 2.8551 -1.9156 0.5801 6 8 3.4531 -2.7793 1.1852 7 7 2.7871 -1.8078 -0.7525 8 6 3.4473 -2.7505 -1.6590 9 7 2.5306 -3.8560 -1.9683 10 6 2.5228 -4.8510 -0.8882 11 6 1.4544 -5.9086 -1.1750 12 6 1.7591 -6.5844 -2.5148 13 6 0.6787 -7.5861 -2.8322 14 1 0.0865 -7.4756 -3.7285 15 6 0.4463 -8.6433 -1.9782 16 7 1.1677 -8.7780 -0.8869 17 14 -0.8933 -9.8844 -2.3714 18 1 -1.5558 -9.5103 -3.6467 19 1 -0.2926 -11.2361 -2.5030 20 1 -1.8967 -9.8931 -1.2767 21 6 1.8095 -5.5203 -3.6146 22 6 2.8674 -4.4739 -3.2571 23 6 2.0626 -0.7699 -1.1888 24 8 1.8684 -0.4885 -2.3518 25 1 -0.3634 0.4675 0.9151 26 1 -0.3634 0.5587 -0.8626 27 1 -0.3632 -1.0264 -0.0526 28 1 3.1583 1.4096 -0.0526 29 1 1.6752 1.9688 -0.8625 30 1 1.7604 1.9366 0.9151 31 1 1.2529 -1.1755 1.8142 32 1 2.7274 -0.1552 1.8144 33 1 3.7213 -2.2371 -2.5805 34 1 4.3446 -3.1451 -1.1822 35 1 3.5003 -5.3292 -0.8280 36 1 2.3008 -4.3580 0.0581 37 1 0.4748 -5.4330 -1.2218 38 1 1.4588 -6.6557 -0.3813 39 1 2.7213 -7.0931 -2.4557 40 1 1.0044 -9.5219 -0.2863 41 1 0.8353 -5.0387 -3.6997 42 1 2.0677 -5.9893 -4.5641 43 1 2.8958 -3.7071 -4.0311 44 1 3.8433 -4.9542 -3.1856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781572200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = -68.844911 kcal Electronic energy + Delta-G solvation = -24988.295296 eV Core-core repulsion = 21519.416606 eV Total energy + Delta-G solvation = -3468.878689 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.09295 -38.65844 -38.13152 -36.20778 -35.25885 -33.43235 -31.19184 -29.81883 -28.84585 -27.76527 -26.55659 -24.78753 -23.84700 -22.12305 -21.57152 -21.03036 -19.21040 -18.62043 -17.07752 -16.92915 -16.28535 -16.24968 -15.25584 -15.10899 -14.46414 -14.44087 -14.32515 -14.20004 -13.91133 -13.68933 -13.23517 -12.92866 -12.71017 -12.53088 -12.46460 -12.34565 -12.01649 -11.78553 -11.68491 -11.44627 -11.37935 -11.00594 -10.81218 -10.52470 -10.36428 -10.22751 -10.04203 -9.92184 -9.81224 -9.39891 -8.96606 -8.69241 -8.27915 -7.93754 -5.95072 -4.00562 1.53636 2.46348 2.76726 3.31770 3.39803 3.44072 3.81781 4.05173 4.16408 4.35678 4.47014 4.49643 4.78183 5.04646 5.15733 5.23404 5.30929 5.32809 5.35124 5.39677 5.48948 5.50707 5.59169 5.67669 5.75173 5.86905 5.90926 6.05076 6.22539 6.29982 6.60415 6.61642 6.83121 6.85963 7.05017 7.12567 7.34624 7.37876 7.55358 7.58194 7.82041 7.84313 8.05194 8.16785 8.49928 9.03288 9.63855 11.11155 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.003969 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.273714 B = 7053.838540 C = 7175.389380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.152 4.152 5 C 0.526 3.474 6 O -0.478 6.478 7 N -0.562 5.562 8 C 0.263 3.737 9 N -0.547 5.547 10 C 0.057 3.943 11 C -0.102 4.102 12 C 0.047 3.953 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.105 4.105 22 C 0.067 3.933 23 C 0.540 3.460 24 O -0.474 6.474 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.022 0.978 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 20.137 4.252 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.189 4.189 4 C -0.192 4.192 5 C 0.315 3.685 6 O -0.349 6.349 7 N -0.305 5.305 8 C 0.052 3.948 9 N -0.274 5.274 10 C -0.070 4.070 11 C -0.140 4.140 12 C 0.028 3.972 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.143 4.143 22 C -0.061 4.061 23 C 0.328 3.672 24 O -0.344 6.344 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.716 19.854 4.020 20.438 hybrid contribution 0.089 -1.190 -0.054 1.195 sum 2.805 18.663 3.966 19.285 Atomic orbital electron populations 1.21755 0.90305 1.03575 1.03423 1.21494 0.99055 0.97128 0.92609 1.21746 1.01112 0.92388 1.03616 1.22715 1.01911 0.96148 0.98408 1.20781 0.79748 0.85993 0.81988 1.90798 1.41214 1.36363 1.66540 1.46865 1.47477 1.26966 1.09193 1.22103 0.90979 0.88273 0.93435 1.61696 1.50224 1.10955 1.04504 1.22405 0.99761 0.92831 0.92014 1.21659 0.94931 0.95066 1.02385 1.18701 0.96997 0.91444 0.90019 1.21234 1.17786 1.08494 1.07287 0.92679 1.24974 0.96215 0.97724 0.95121 1.69887 1.40008 1.30807 1.12349 0.86578 0.82030 0.81317 0.78315 1.19826 1.21126 1.21102 1.21679 0.97133 0.95765 0.99711 1.22085 0.98210 0.96901 0.88883 1.20620 0.76351 0.79932 0.90293 1.90729 1.55591 1.68907 1.19185 0.90752 0.90978 0.91475 0.92080 0.90954 0.90694 0.86083 0.86333 0.88411 0.91335 0.95457 0.92298 0.94081 0.88844 0.96029 0.93146 0.92445 0.92844 0.91990 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.45 37.16 0.31 -0.77 16 2 C -0.10 -0.89 1.05 -154.72 -0.16 -1.05 16 3 C -0.13 -0.85 8.45 37.16 0.31 -0.54 16 4 C -0.15 -1.29 6.32 -26.94 -0.17 -1.46 16 5 C 0.53 7.06 7.29 -11.09 -0.08 6.98 16 6 O -0.48 -8.01 15.91 5.60 0.09 -7.92 16 7 N -0.56 -7.94 2.77 -118.62 -0.33 -8.27 16 8 C 0.26 4.09 5.42 -63.32 -0.34 3.75 16 9 N -0.55 -10.23 4.75 -238.57 -1.13 -11.36 16 10 C 0.06 1.19 5.21 -3.83 -0.02 1.17 16 11 C -0.10 -2.51 5.13 -26.65 -0.14 -2.64 16 12 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 13 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 16 N -0.89 -25.83 11.37 55.43 0.63 -25.20 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C -0.10 -2.25 5.32 -26.65 -0.14 -2.40 16 22 C 0.07 1.23 5.40 -3.83 -0.02 1.21 16 23 C 0.54 7.16 6.74 -11.09 -0.07 7.09 16 24 O -0.47 -7.65 17.48 5.61 0.10 -7.55 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.12 0.89 7.74 -51.93 -0.40 0.49 16 32 H 0.12 0.70 7.74 -51.93 -0.40 0.30 16 33 H 0.10 1.40 7.40 -51.93 -0.38 1.01 16 34 H 0.07 1.06 7.61 -51.93 -0.40 0.66 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.23 5.64 -51.93 -0.29 0.93 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 2.55 6.18 -51.93 -0.32 2.23 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.02 7.91 -51.93 -0.41 0.60 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -32.33 347.90 -8.76 -41.09 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.22 Total: -2.00 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.11 Total: -0.59 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.83 Total: -44.83 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.19 Total: -15.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.33 -8.76 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.759 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds