Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.65918 * 2 1 4 4 C 1.54226 * 110.61010 * 122.93029 * 2 1 3 5 5 C 1.51311 * 103.55422 * 118.51923 * 4 2 1 6 6 O 1.21233 * 125.39199 * 179.97438 * 5 4 2 7 7 N 1.33872 * 109.20933 * 0.24888 * 5 4 2 8 8 C 1.46497 * 122.76512 * 179.75759 * 7 5 4 9 9 N 1.46901 * 109.47155 * 90.01939 * 8 7 5 10 10 C 1.46851 * 111.00076 * 279.21070 * 9 8 7 11 11 C 1.53043 * 109.52081 * 174.15799 * 10 9 8 12 12 C 1.53117 * 109.27394 * 59.18276 * 11 10 9 13 13 C 1.50702 * 109.57359 * 182.40265 * 12 11 10 14 14 H 1.07998 * 119.99814 * 119.70910 * 13 12 11 15 15 C 1.37879 * 120.00208 * 299.72227 * 13 12 11 16 16 N 1.31509 * 120.00000 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00065 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47039 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47122 * 119.99580 * 17 15 13 20 20 H 1.48496 * 109.47013 * 239.99442 * 17 15 13 21 21 C 1.53116 * 109.16502 * 302.34254 * 12 11 10 22 22 C 1.46845 * 110.99936 * 155.00240 * 9 8 7 23 23 C 1.33877 * 114.47412 * 359.55700 * 7 5 4 24 24 O 1.21223 * 125.39865 * 180.17267 * 23 7 5 25 25 H 1.09001 * 109.47428 * 297.06236 * 1 2 3 26 26 H 1.09003 * 109.47310 * 57.06854 * 1 2 3 27 27 H 1.09001 * 109.46636 * 177.06479 * 1 2 3 28 28 H 1.09001 * 109.47567 * 182.93375 * 3 2 1 29 29 H 1.09001 * 109.47431 * 302.93321 * 3 2 1 30 30 H 1.09003 * 109.47131 * 62.93139 * 3 2 1 31 31 H 1.08999 * 110.60476 * 0.02562 * 4 2 1 32 32 H 1.08997 * 110.60827 * 237.04086 * 4 2 1 33 33 H 1.08996 * 109.47071 * 210.02127 * 8 7 5 34 34 H 1.09007 * 109.47025 * 330.02277 * 8 7 5 35 35 H 1.08995 * 109.46263 * 294.17686 * 10 9 8 36 36 H 1.08997 * 109.46117 * 54.14979 * 10 9 8 37 37 H 1.08995 * 109.50323 * 299.23865 * 11 10 9 38 38 H 1.09006 * 109.53236 * 179.13771 * 11 10 9 39 39 H 1.09002 * 109.52272 * 62.24994 * 12 11 10 40 40 H 0.96998 * 120.00385 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.49778 * 297.71479 * 21 12 11 42 42 H 1.09002 * 109.53908 * 177.62283 * 21 12 11 43 43 H 1.08996 * 109.46316 * 305.85325 * 22 9 8 44 44 H 1.09005 * 109.46544 * 65.83820 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0729 -0.7847 1.2116 5 6 2.8551 -1.9156 0.5801 6 8 3.4531 -2.7793 1.1852 7 7 2.7871 -1.8078 -0.7525 8 6 3.4473 -2.7505 -1.6590 9 7 2.5306 -3.8560 -1.9683 10 6 2.5228 -4.8510 -0.8882 11 6 1.4544 -5.9086 -1.1750 12 6 1.7591 -6.5844 -2.5148 13 6 0.6787 -7.5861 -2.8322 14 1 0.0865 -7.4756 -3.7285 15 6 0.4463 -8.6433 -1.9782 16 7 1.1677 -8.7780 -0.8869 17 14 -0.8933 -9.8844 -2.3714 18 1 -1.5558 -9.5103 -3.6467 19 1 -0.2926 -11.2361 -2.5030 20 1 -1.8967 -9.8931 -1.2767 21 6 1.8095 -5.5203 -3.6146 22 6 2.8674 -4.4739 -3.2571 23 6 2.0626 -0.7699 -1.1888 24 8 1.8684 -0.4885 -2.3518 25 1 -0.3634 0.4675 0.9151 26 1 -0.3634 0.5587 -0.8626 27 1 -0.3632 -1.0264 -0.0526 28 1 3.1583 1.4096 -0.0526 29 1 1.6752 1.9688 -0.8625 30 1 1.7604 1.9366 0.9151 31 1 1.2529 -1.1755 1.8142 32 1 2.7274 -0.1552 1.8144 33 1 3.7213 -2.2371 -2.5805 34 1 4.3446 -3.1451 -1.1822 35 1 3.5003 -5.3292 -0.8280 36 1 2.3008 -4.3580 0.0581 37 1 0.4748 -5.4330 -1.2218 38 1 1.4588 -6.6557 -0.3813 39 1 2.7213 -7.0931 -2.4557 40 1 1.0044 -9.5219 -0.2863 41 1 0.8353 -5.0387 -3.6997 42 1 2.0677 -5.9893 -4.5641 43 1 2.8958 -3.7071 -4.0311 44 1 3.8433 -4.9542 -3.1856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781572200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -90.049525 kcal Electronic energy + Delta-G solvation = -24989.214797 eV Core-core repulsion = 21519.416606 eV Total energy + Delta-G solvation = -3469.798191 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.10571 -39.92349 -39.60612 -37.19345 -36.56222 -35.13131 -33.02192 -31.59888 -29.82383 -28.31039 -28.11538 -26.29100 -25.05752 -23.84982 -23.25866 -22.00276 -20.47593 -20.20221 -18.54772 -18.16372 -17.99971 -17.27054 -16.71645 -16.30277 -16.18252 -15.81085 -15.36833 -15.22229 -14.97491 -14.83464 -14.61152 -14.57328 -14.22864 -14.13648 -13.41661 -13.26651 -13.16683 -13.07999 -12.92227 -12.69730 -12.59365 -12.49526 -12.32650 -12.10042 -12.03063 -11.98928 -11.47570 -11.35834 -11.10590 -10.95436 -10.86301 -10.69822 -10.41193 -9.48005 -8.10685 -6.24663 0.50870 1.38424 1.40006 1.41107 1.51894 1.76343 2.41843 2.86980 3.04753 3.16304 3.21240 3.42797 3.81988 3.84032 4.01509 4.12113 4.13246 4.20673 4.27363 4.38322 4.54574 4.59756 4.65059 4.68262 4.76863 4.81001 4.83349 4.87333 4.93347 5.00076 5.04526 5.13503 5.22633 5.25906 5.33364 5.46783 5.56862 5.75905 5.87749 5.94011 6.04974 6.16285 6.33225 6.36002 6.76359 6.86660 7.43526 8.94356 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.003969 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.273714 B = 7053.838540 C = 7175.389380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.137 4.137 5 C 0.518 3.482 6 O -0.519 6.519 7 N -0.570 5.570 8 C 0.262 3.738 9 N -0.554 5.554 10 C 0.076 3.924 11 C -0.091 4.091 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.097 4.097 22 C 0.072 3.928 23 C 0.533 3.467 24 O -0.508 6.508 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.060 0.940 37 H 0.026 0.974 38 H 0.061 0.939 39 H -0.008 1.008 40 H 0.260 0.740 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 22.341 4.796 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.185 4.185 4 C -0.176 4.176 5 C 0.310 3.690 6 O -0.393 6.393 7 N -0.312 5.312 8 C 0.051 3.949 9 N -0.281 5.281 10 C -0.051 4.051 11 C -0.129 4.129 12 C 0.025 3.975 13 C -0.571 4.571 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.135 4.135 22 C -0.056 4.056 23 C 0.323 3.677 24 O -0.381 6.381 25 H 0.127 0.873 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.010 0.990 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.129 22.091 4.563 22.658 hybrid contribution 0.290 -1.871 -0.244 1.909 sum 2.419 20.220 4.319 20.817 Atomic orbital electron populations 1.21804 0.89576 1.02566 1.05049 1.21589 0.99406 0.97995 0.90162 1.21798 1.01178 0.90439 1.05093 1.22853 1.02163 0.94340 0.98274 1.21691 0.79171 0.86525 0.81647 1.90779 1.43107 1.38301 1.67078 1.47065 1.47652 1.26908 1.09603 1.22099 0.90538 0.87572 0.94702 1.61644 1.51872 1.10847 1.03763 1.22040 0.97653 0.92408 0.93033 1.21399 0.95386 0.95144 1.00981 1.18667 0.94743 0.92197 0.91853 1.21587 1.18540 1.09590 1.07369 0.92973 1.25769 0.98387 0.99599 0.94913 1.70029 1.41336 1.31368 1.13095 0.85547 0.79228 0.78829 0.78297 1.19139 1.20538 1.20612 1.21532 0.97874 0.95456 0.98654 1.22031 0.97100 0.96897 0.89533 1.21507 0.75434 0.79626 0.91136 1.90704 1.56725 1.69711 1.20933 0.87267 0.91478 0.93561 0.91865 0.91531 0.87400 0.84331 0.82747 0.86926 0.91314 0.96599 0.92162 0.95483 0.92090 0.99031 0.93064 0.93339 0.92000 0.89113 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.45 71.98 0.61 -1.20 16 2 C -0.09 -1.32 1.05 -52.32 -0.06 -1.37 16 3 C -0.13 -1.17 8.45 71.98 0.61 -0.57 16 4 C -0.14 -1.88 6.32 30.46 0.19 -1.68 16 5 C 0.52 13.25 7.29 87.99 0.64 13.90 16 6 O -0.52 -17.24 15.91 -2.88 -0.05 -17.29 16 7 N -0.57 -15.58 2.77 -767.03 -2.12 -17.71 16 8 C 0.26 8.01 5.42 170.81 0.93 8.94 16 9 N -0.55 -20.71 4.75 -908.71 -4.32 -25.03 16 10 C 0.08 3.29 5.21 86.33 0.45 3.74 16 11 C -0.09 -4.63 5.13 30.65 0.16 -4.48 16 12 C 0.04 2.31 2.16 -11.46 -0.02 2.28 16 13 C -0.53 -30.48 8.56 25.60 0.22 -30.26 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.66 5.31 84.66 0.45 1.11 16 16 N -0.92 -54.75 11.37 21.45 0.24 -54.50 16 17 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 C -0.10 -4.21 5.32 30.65 0.16 -4.05 16 22 C 0.07 2.60 5.40 86.33 0.47 3.06 16 23 C 0.53 13.42 6.74 87.99 0.59 14.01 16 24 O -0.51 -16.01 17.48 -2.86 -0.05 -16.06 16 25 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.14 1.52 7.74 -2.39 -0.02 1.50 16 32 H 0.15 1.08 7.74 -2.39 -0.02 1.06 16 33 H 0.11 3.09 7.40 -2.39 -0.02 3.07 16 34 H 0.07 2.11 7.61 -2.38 -0.02 2.09 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 2.57 5.64 -2.39 -0.01 2.56 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.06 3.50 6.18 -2.38 -0.01 3.49 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 43 H 0.09 2.80 7.91 -2.39 -0.02 2.78 16 44 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -73.18 347.90 2.10 -71.09 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.97 Total: 9.24 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.39 Total: 3.43 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -6.20 Total: -97.24 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.10 Total: -33.35 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.18 2.10 -71.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal (2) G-P(sol) polarization free energy of solvation -73.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds