Wall clock time and date at job start Tue Mar 31 2020 07:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34891 * 116.99860 * 2 1 4 4 O 1.21617 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.46493 * 120.00274 * 179.97438 * 3 2 1 6 6 C 1.37999 * 126.26822 * 180.15486 * 5 3 2 7 7 C 1.39800 * 106.96921 * 180.25539 * 6 5 3 8 8 C 1.35491 * 107.84063 * 359.75754 * 7 6 5 9 9 C 1.50700 * 125.50285 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47212 * 265.07615 * 9 8 7 11 11 C 1.46897 * 110.99947 * 75.75055 * 10 9 8 12 12 C 1.50703 * 109.47382 * 189.99976 * 11 10 9 13 13 H 1.08003 * 119.99582 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00010 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00594 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99808 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47306 * 89.99859 * 16 14 12 18 18 H 1.48501 * 109.47245 * 210.00128 * 16 14 12 19 19 H 1.48501 * 109.47080 * 329.99609 * 16 14 12 20 20 C 1.46905 * 110.99855 * 199.70492 * 10 9 8 21 21 C 1.53000 * 109.47001 * 75.71223 * 20 10 9 22 22 C 1.52998 * 109.46826 * 64.32161 * 21 20 10 23 23 C 1.53004 * 109.46813 * 184.31777 * 21 20 10 24 24 N 1.34951 * 108.98681 * 0.02562 * 8 7 6 25 25 H 0.97003 * 125.63812 * 179.97438 * 24 8 7 26 26 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47070 * 299.99558 * 1 2 3 28 28 H 1.09004 * 109.47220 * 60.00112 * 1 2 3 29 29 H 1.07997 * 126.51040 * 0.02562 * 6 5 3 30 30 H 1.07997 * 126.07471 * 179.72841 * 7 6 5 31 31 H 1.08998 * 109.46931 * 25.08148 * 9 8 7 32 32 H 1.09000 * 109.46664 * 145.07549 * 9 8 7 33 33 H 1.08998 * 109.47318 * 310.00246 * 11 10 9 34 34 H 1.09005 * 109.47111 * 69.99917 * 11 10 9 35 35 H 0.96998 * 120.00602 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.46408 * 195.71422 * 20 10 9 37 37 H 1.08992 * 109.46893 * 315.70981 * 20 10 9 38 38 H 1.08997 * 109.47144 * 304.32085 * 21 20 10 39 39 H 1.08994 * 109.47809 * 59.99907 * 22 21 20 40 40 H 1.09011 * 109.46842 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.47192 * 299.99299 * 22 21 20 42 42 H 1.09002 * 109.46760 * 59.99994 * 23 21 20 43 43 H 1.09001 * 109.46683 * 180.02562 * 23 21 20 44 44 H 1.09000 * 109.47126 * 300.00384 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2842 2.4326 0.0036 7 6 5.6260 2.0403 -0.0030 8 6 5.6626 0.6859 -0.0043 9 6 6.9126 -0.1558 -0.0114 10 7 7.2453 -0.5268 -1.3933 11 6 7.8337 0.6087 -2.1160 12 6 7.9343 0.2736 -3.5819 13 1 7.5954 -0.6871 -3.9406 14 6 8.4599 1.1929 -4.4647 15 7 8.8740 2.3622 -4.0277 16 14 8.5839 0.7777 -6.2818 17 1 7.3381 1.1984 -6.9718 18 1 9.7433 1.4914 -6.8746 19 1 8.7689 -0.6868 -6.4434 20 6 8.1399 -1.6916 -1.4249 21 6 7.3386 -2.9585 -1.1187 22 6 6.3088 -3.1906 -2.2262 23 6 8.2874 -4.1566 -1.0453 24 7 4.3988 0.2126 0.0006 25 1 4.1460 -0.7240 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9108 3.4459 0.0065 30 1 6.4813 2.6997 -0.0068 31 1 7.7360 0.4129 0.4205 32 1 6.7462 -1.0582 0.5770 33 1 7.2027 1.4880 -1.9868 34 1 8.8287 0.8145 -1.7213 35 1 9.2434 3.0091 -4.6489 36 1 8.5906 -1.7767 -2.4136 37 1 8.9238 -1.5679 -0.6777 38 1 6.8257 -2.8421 -0.1641 39 1 6.8217 -3.3069 -3.1808 40 1 5.7382 -4.0935 -2.0082 41 1 5.6329 -2.3370 -2.2785 42 1 9.0211 -3.9912 -0.2563 43 1 7.7164 -5.0593 -0.8276 44 1 8.8004 -4.2729 -2.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781894051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:02 Heat of formation + Delta-G solvation = -50.488586 kcal Electronic energy + Delta-G solvation = -24119.134498 eV Core-core repulsion = 20651.051798 eV Total energy + Delta-G solvation = -3468.082699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19460 -39.78280 -37.48000 -36.34780 -34.18356 -32.50721 -30.86547 -30.22160 -28.10144 -27.16241 -26.75720 -25.84587 -23.92778 -22.48539 -20.80083 -20.29290 -19.80103 -19.36182 -18.30709 -16.87419 -16.39476 -16.33653 -15.59688 -14.85687 -14.63013 -14.42932 -14.00475 -13.77751 -13.64799 -13.43539 -13.05494 -12.89150 -12.77540 -12.36759 -12.28907 -12.22695 -11.90191 -11.88397 -11.61762 -11.20605 -11.03439 -10.87065 -10.83024 -10.68482 -10.61215 -10.57012 -10.32418 -10.01314 -9.75994 -9.19278 -8.69455 -8.41613 -7.89070 -7.33631 -6.01588 -4.02084 1.42186 2.68163 2.91749 3.32397 3.38894 3.39801 3.41162 3.41581 4.43183 4.84698 4.98096 4.99370 5.07133 5.20253 5.25268 5.34924 5.36330 5.39591 5.42893 5.61623 5.64190 5.80854 5.85544 5.93326 6.03899 6.08448 6.22633 6.24119 6.31802 6.34581 6.43884 6.50403 6.55851 6.80806 6.85252 7.04935 7.21108 7.28292 7.32669 7.66269 7.78537 7.83865 8.08091 8.16103 8.50800 9.04625 9.61577 11.09237 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.004811 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.728440 B = 5818.095222 C = 6917.978198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.540 3.460 4 O -0.509 6.509 5 C -0.066 4.066 6 C -0.085 4.085 7 C -0.203 4.203 8 C 0.107 3.893 9 C 0.106 3.894 10 N -0.530 5.530 11 C 0.190 3.810 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.065 3.935 21 C -0.092 4.092 22 C -0.134 4.134 23 C -0.145 4.145 24 N -0.514 5.514 25 H 0.419 0.581 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.041 0.959 34 H -0.010 1.010 35 H 0.261 0.739 36 H 0.090 0.910 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -8.566 10.291 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.284 6.284 3 C 0.387 3.613 4 O -0.398 6.398 5 C -0.176 4.176 6 C -0.112 4.112 7 C -0.227 4.227 8 C -0.014 4.014 9 C -0.023 4.023 10 N -0.255 5.255 11 C 0.065 3.935 12 C -0.544 4.544 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.063 4.063 21 C -0.111 4.111 22 C -0.191 4.191 23 C -0.203 4.203 24 N -0.109 5.109 25 H 0.257 0.743 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.448 -8.379 9.983 16.098 hybrid contribution 0.506 -0.195 -0.761 0.935 sum -8.942 -8.574 9.222 15.444 Atomic orbital electron populations 1.23218 0.76118 1.03484 1.02583 1.86574 1.23600 1.33145 1.85034 1.19874 0.87140 0.81452 0.72818 1.90870 1.65578 1.35825 1.47533 1.19067 0.85954 0.88623 1.23991 1.21281 0.92361 0.96561 1.00973 1.20738 0.96851 0.93538 1.11570 1.20483 0.85134 0.94201 1.01597 1.20693 0.91575 0.96792 0.93209 1.62105 1.45606 1.08102 1.09644 1.19831 0.92728 0.87943 0.92967 1.21111 1.40088 1.01399 0.91822 0.91966 1.24940 0.95651 0.95032 0.98771 1.69945 1.42299 1.06453 1.34838 0.86574 0.77535 0.78347 0.85392 1.20719 1.21370 1.19953 1.22102 0.92801 0.89287 1.02108 1.21140 0.96552 0.94663 0.98724 1.21670 0.98807 1.00463 0.98153 1.21815 0.99246 0.97610 1.01647 1.41664 1.05290 1.08445 1.55453 0.74332 0.88219 0.91956 0.91808 0.83570 0.83613 0.92546 0.91055 0.94065 0.99182 0.92971 0.89188 0.96121 0.92449 0.93007 0.94569 0.91417 0.93234 0.93263 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.37 -4.83 10.58 -41.02 -0.43 -5.26 16 3 C 0.54 8.49 7.93 34.06 0.27 8.76 16 4 O -0.51 -8.97 16.68 -19.35 -0.32 -9.30 16 5 C -0.07 -1.07 7.10 -81.99 -0.58 -1.65 16 6 C -0.08 -1.41 10.66 -39.09 -0.42 -1.83 16 7 C -0.20 -3.47 9.66 -39.98 -0.39 -3.86 16 8 C 0.11 1.75 6.18 -82.20 -0.51 1.24 16 9 C 0.11 1.69 5.34 -4.98 -0.03 1.67 16 10 N -0.53 -10.14 3.77 -237.52 -0.90 -11.04 16 11 C 0.19 4.62 4.55 -4.98 -0.02 4.60 16 12 C -0.51 -13.59 8.23 -34.44 -0.28 -13.88 16 13 H 0.06 1.66 7.31 -52.48 -0.38 1.28 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.07 1.13 4.19 -3.82 -0.02 1.11 16 21 C -0.09 -1.29 2.96 -90.62 -0.27 -1.56 16 22 C -0.13 -1.96 9.07 37.16 0.34 -1.62 16 23 C -0.15 -1.76 9.19 37.16 0.34 -1.42 16 24 N -0.51 -7.65 6.07 -5.82 -0.04 -7.68 16 25 H 0.42 5.29 8.96 -40.82 -0.37 4.93 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.15 2.46 8.06 -52.49 -0.42 2.03 16 31 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 32 H 0.07 0.95 6.45 -51.93 -0.33 0.62 16 33 H 0.04 1.09 6.59 -51.93 -0.34 0.74 16 34 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.09 1.80 6.58 -51.93 -0.34 1.46 16 37 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 38 H 0.06 0.75 6.67 -51.93 -0.35 0.40 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.07 1.11 7.73 -51.93 -0.40 0.71 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.74 366.29 -8.17 -38.91 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.13 Total: 3.25 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.59 Total: -5.49 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.19 Total: -44.05 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.76 Total: -14.56 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.74 -8.17 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781894051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.577 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds