Wall clock time and date at job start Tue Mar 31 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34891 * 116.99860 * 2 1 4 4 O 1.21617 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.46493 * 120.00274 * 179.97438 * 3 2 1 6 6 C 1.37999 * 126.26822 * 180.15486 * 5 3 2 7 7 C 1.39800 * 106.96921 * 180.25539 * 6 5 3 8 8 C 1.35491 * 107.84063 * 359.75754 * 7 6 5 9 9 C 1.50700 * 125.50285 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47212 * 265.07615 * 9 8 7 11 11 C 1.46897 * 110.99947 * 75.75055 * 10 9 8 12 12 C 1.50703 * 109.47382 * 189.99976 * 11 10 9 13 13 H 1.08003 * 119.99582 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00010 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00594 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99808 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47306 * 89.99859 * 16 14 12 18 18 H 1.48501 * 109.47245 * 210.00128 * 16 14 12 19 19 H 1.48501 * 109.47080 * 329.99609 * 16 14 12 20 20 C 1.46905 * 110.99855 * 199.70492 * 10 9 8 21 21 C 1.53000 * 109.47001 * 75.71223 * 20 10 9 22 22 C 1.52998 * 109.46826 * 64.32161 * 21 20 10 23 23 C 1.53004 * 109.46813 * 184.31777 * 21 20 10 24 24 N 1.34951 * 108.98681 * 0.02562 * 8 7 6 25 25 H 0.97003 * 125.63812 * 179.97438 * 24 8 7 26 26 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47070 * 299.99558 * 1 2 3 28 28 H 1.09004 * 109.47220 * 60.00112 * 1 2 3 29 29 H 1.07997 * 126.51040 * 0.02562 * 6 5 3 30 30 H 1.07997 * 126.07471 * 179.72841 * 7 6 5 31 31 H 1.08998 * 109.46931 * 25.08148 * 9 8 7 32 32 H 1.09000 * 109.46664 * 145.07549 * 9 8 7 33 33 H 1.08998 * 109.47318 * 310.00246 * 11 10 9 34 34 H 1.09005 * 109.47111 * 69.99917 * 11 10 9 35 35 H 0.96998 * 120.00602 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.46408 * 195.71422 * 20 10 9 37 37 H 1.08992 * 109.46893 * 315.70981 * 20 10 9 38 38 H 1.08997 * 109.47144 * 304.32085 * 21 20 10 39 39 H 1.08994 * 109.47809 * 59.99907 * 22 21 20 40 40 H 1.09011 * 109.46842 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.47192 * 299.99299 * 22 21 20 42 42 H 1.09002 * 109.46760 * 59.99994 * 23 21 20 43 43 H 1.09001 * 109.46683 * 180.02562 * 23 21 20 44 44 H 1.09000 * 109.47126 * 300.00384 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2842 2.4326 0.0036 7 6 5.6260 2.0403 -0.0030 8 6 5.6626 0.6859 -0.0043 9 6 6.9126 -0.1558 -0.0114 10 7 7.2453 -0.5268 -1.3933 11 6 7.8337 0.6087 -2.1160 12 6 7.9343 0.2736 -3.5819 13 1 7.5954 -0.6871 -3.9406 14 6 8.4599 1.1929 -4.4647 15 7 8.8740 2.3622 -4.0277 16 14 8.5839 0.7777 -6.2818 17 1 7.3381 1.1984 -6.9718 18 1 9.7433 1.4914 -6.8746 19 1 8.7689 -0.6868 -6.4434 20 6 8.1399 -1.6916 -1.4249 21 6 7.3386 -2.9585 -1.1187 22 6 6.3088 -3.1906 -2.2262 23 6 8.2874 -4.1566 -1.0453 24 7 4.3988 0.2126 0.0006 25 1 4.1460 -0.7240 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9108 3.4459 0.0065 30 1 6.4813 2.6997 -0.0068 31 1 7.7360 0.4129 0.4205 32 1 6.7462 -1.0582 0.5770 33 1 7.2027 1.4880 -1.9868 34 1 8.8287 0.8145 -1.7213 35 1 9.2434 3.0091 -4.6489 36 1 8.5906 -1.7767 -2.4136 37 1 8.9238 -1.5679 -0.6777 38 1 6.8257 -2.8421 -0.1641 39 1 6.8217 -3.3069 -3.1808 40 1 5.7382 -4.0935 -2.0082 41 1 5.6329 -2.3370 -2.2785 42 1 9.0211 -3.9912 -0.2563 43 1 7.7164 -5.0593 -0.8276 44 1 8.8004 -4.2729 -2.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781894051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:01 Heat of formation + Delta-G solvation = -68.723653 kcal Electronic energy + Delta-G solvation = -24119.925230 eV Core-core repulsion = 20651.051798 eV Total energy + Delta-G solvation = -3468.873431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45781 -40.96068 -38.91453 -37.50501 -35.58689 -34.45083 -32.14932 -31.60469 -29.42528 -28.64049 -27.82957 -27.07365 -25.64868 -23.81301 -22.36517 -21.56901 -21.08225 -20.61565 -19.52297 -18.43887 -17.99394 -17.46577 -16.99883 -16.47909 -16.14333 -15.65366 -15.49225 -14.97365 -14.82619 -14.73558 -14.30672 -14.26238 -14.05033 -13.92105 -13.62682 -13.48279 -13.30071 -13.05019 -12.94160 -12.78630 -12.59864 -12.43113 -12.37669 -11.95445 -11.86049 -11.85293 -11.69823 -11.50524 -11.31060 -11.06944 -10.54710 -9.97379 -9.22391 -8.93037 -8.14462 -6.21473 0.15762 1.40754 1.42091 1.51554 1.56772 1.63849 2.11481 2.21085 2.42874 3.19136 3.40388 3.89702 3.94040 4.05452 4.16888 4.26838 4.29705 4.32078 4.33185 4.44448 4.55461 4.59588 4.69245 4.79990 4.91651 4.95663 5.00278 5.03043 5.12992 5.16004 5.21101 5.26390 5.31656 5.37930 5.43618 5.59510 5.67767 5.70457 5.75689 5.90811 6.14354 6.40023 6.50749 6.64663 6.68355 6.94825 7.46681 8.96179 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.004811 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.728440 B = 5818.095222 C = 6917.978198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.544 3.456 4 O -0.533 6.533 5 C -0.069 4.069 6 C -0.100 4.100 7 C -0.221 4.221 8 C 0.103 3.897 9 C 0.109 3.891 10 N -0.530 5.530 11 C 0.207 3.793 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.956 3.044 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.066 3.934 21 C -0.083 4.083 22 C -0.130 4.130 23 C -0.141 4.141 24 N -0.499 5.499 25 H 0.432 0.568 26 H 0.136 0.864 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.017 0.983 34 H -0.038 1.038 35 H 0.261 0.739 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 -11.141 10.779 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.392 3.608 4 O -0.424 6.424 5 C -0.180 4.180 6 C -0.127 4.127 7 C -0.245 4.245 8 C -0.019 4.019 9 C -0.019 4.019 10 N -0.255 5.255 11 C 0.081 3.919 12 C -0.551 4.551 13 H 0.078 0.922 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.782 3.218 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.062 4.062 21 C -0.102 4.102 22 C -0.187 4.187 23 C -0.199 4.199 24 N -0.095 5.095 25 H 0.272 0.728 26 H 0.154 0.846 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.035 0.965 34 H -0.020 1.020 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.568 -11.011 10.482 18.515 hybrid contribution 0.783 0.568 -0.861 1.295 sum -9.785 -10.444 9.621 17.245 Atomic orbital electron populations 1.23603 0.73844 1.05987 1.02769 1.86559 1.25750 1.31431 1.84318 1.19773 0.86869 0.81882 0.72277 1.90857 1.66011 1.36805 1.48714 1.19192 0.86611 0.88738 1.23463 1.21439 0.92360 0.97360 1.01537 1.20824 0.97010 0.94262 1.12436 1.20470 0.85744 0.93970 1.01766 1.20756 0.91265 0.98333 0.91582 1.61987 1.45223 1.06763 1.11486 1.19420 0.90873 0.89059 0.92565 1.21437 1.39307 1.01112 0.93283 0.92164 1.25755 0.95519 0.94953 1.03107 1.70068 1.43433 1.07454 1.36248 0.85584 0.77430 0.78584 0.80240 1.20573 1.20991 1.18846 1.22125 0.93342 0.90168 1.00563 1.21095 0.96411 0.93432 0.99279 1.21626 0.98645 1.00841 0.97627 1.21780 0.99179 0.97376 1.01574 1.41573 1.04514 1.08914 1.54466 0.72845 0.84570 0.91438 0.92054 0.83038 0.84407 0.92695 0.87461 0.96507 1.02039 0.92998 0.92416 0.95488 0.90408 0.94766 0.91842 0.93475 0.92314 0.91102 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -8.85 10.58 -58.05 -0.61 -9.47 16 3 C 0.54 16.58 7.93 69.97 0.55 17.13 16 4 O -0.53 -18.52 16.68 19.45 0.32 -18.20 16 5 C -0.07 -2.20 7.10 40.32 0.29 -1.91 16 6 C -0.10 -3.38 10.66 22.59 0.24 -3.14 16 7 C -0.22 -7.75 9.66 22.01 0.21 -7.54 16 8 C 0.10 3.30 6.18 41.44 0.26 3.55 16 9 C 0.11 3.36 5.34 85.56 0.46 3.82 16 10 N -0.53 -20.23 3.77 -905.37 -3.41 -23.64 16 11 C 0.21 10.39 4.55 85.56 0.39 10.78 16 12 C -0.51 -28.17 8.23 25.60 0.21 -27.96 16 13 H 0.06 3.27 7.31 -2.91 -0.02 3.24 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -55.60 13.29 21.44 0.28 -55.32 16 16 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.07 2.24 4.19 86.30 0.36 2.60 16 21 C -0.08 -2.12 2.96 -10.79 -0.03 -2.15 16 22 C -0.13 -3.54 9.07 71.98 0.65 -2.89 16 23 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 24 N -0.50 -14.21 6.07 -172.32 -1.05 -15.26 16 25 H 0.43 9.90 8.96 -92.71 -0.83 9.07 16 26 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.15 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.05 1.74 8.00 -2.39 -0.02 1.72 16 32 H 0.11 2.53 6.45 -2.39 -0.02 2.52 16 33 H 0.02 0.92 6.59 -2.39 -0.02 0.91 16 34 H -0.04 -2.09 8.12 -2.38 -0.02 -2.11 16 35 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.06 2.34 6.58 -2.39 -0.02 2.32 16 37 H 0.03 0.88 8.00 -2.39 -0.02 0.86 16 38 H 0.08 1.70 6.67 -2.39 -0.02 1.68 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 41 H 0.05 1.47 7.73 -2.38 -0.02 1.45 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.64 366.29 3.63 -64.01 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.16 Total: 19.03 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.91 Total: -7.59 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -4.17 Total: -94.21 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.29 Total: -27.66 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.64 3.63 -64.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781894051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.713 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds