Wall clock time and date at job start Tue Mar 31 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47541 * 2 1 4 4 C 1.33452 * 118.46381 * 93.16518 * 3 2 1 5 5 C 1.41798 * 118.78796 * 0.39633 * 4 3 2 6 6 O 1.21740 * 119.99940 * 262.28132 * 5 4 3 7 7 N 1.34782 * 120.00170 * 82.27527 * 5 4 3 8 8 C 1.46959 * 120.59133 * 4.76700 * 7 5 4 9 9 C 1.53818 * 108.40089 * 124.75416 * 8 7 5 10 10 N 1.46964 * 108.57573 * 49.63536 * 9 8 7 11 11 C 1.36936 * 120.59436 * 124.62864 * 10 9 8 12 12 H 1.07999 * 119.99944 * 205.72311 * 11 10 9 13 13 C 1.38812 * 119.99737 * 25.71280 * 11 10 9 14 14 N 1.31625 * 120.00147 * 219.79003 * 13 11 10 15 15 Si 1.86795 * 120.00115 * 39.79619 * 13 11 10 16 16 H 1.48499 * 109.47164 * 95.33888 * 15 13 11 17 17 H 1.48497 * 109.47468 * 215.34120 * 15 13 11 18 18 H 1.48506 * 109.46975 * 335.33885 * 15 13 11 19 19 C 1.46962 * 118.81197 * 304.65092 * 10 9 8 20 20 C 1.46964 * 120.59437 * 185.04353 * 7 5 4 21 21 C 1.50415 * 122.42972 * 180.41447 * 4 3 2 22 22 C 1.53217 * 109.56097 * 342.31097 * 21 4 3 23 23 C 1.53480 * 108.25614 * 47.35633 * 22 21 4 24 24 O 1.34351 * 118.45673 * 272.90558 * 3 2 1 25 25 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47086 * 300.00439 * 1 2 3 27 27 H 1.09002 * 109.47279 * 60.00144 * 1 2 3 28 28 H 1.09003 * 109.46865 * 119.99515 * 2 1 3 29 29 H 1.09002 * 109.47086 * 239.99561 * 2 1 3 30 30 H 1.09001 * 109.61213 * 244.54045 * 8 7 5 31 31 H 1.09002 * 109.61377 * 5.04919 * 8 7 5 32 32 H 1.08995 * 109.73855 * 289.85044 * 9 8 7 33 33 H 1.08994 * 109.67393 * 169.38556 * 9 8 7 34 34 H 0.96996 * 119.99986 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.60940 * 295.47500 * 19 10 9 36 36 H 1.09004 * 109.75291 * 175.05444 * 19 10 9 37 37 H 1.09003 * 109.61054 * 354.94789 * 20 7 5 38 38 H 1.08997 * 109.60669 * 115.29370 * 20 7 5 39 39 H 1.09000 * 109.45781 * 102.33643 * 21 4 3 40 40 H 1.08999 * 109.45595 * 222.30321 * 21 4 3 41 41 H 1.09004 * 109.70247 * 167.04316 * 22 21 4 42 42 H 1.08997 * 109.70489 * 287.61831 * 22 21 4 43 43 H 1.08999 * 109.70856 * 56.98903 * 23 22 21 44 44 H 1.08997 * 109.69913 * 177.56283 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3055 1.9988 1.1714 5 6 2.1200 1.2509 2.3617 6 8 1.0982 1.3825 3.0103 7 7 3.0748 0.3940 2.7750 8 6 4.3559 0.3008 2.0610 9 6 5.4924 0.5385 3.0698 10 7 5.2687 -0.3235 4.2389 11 6 6.2384 -1.1946 4.6583 12 1 5.9651 -2.0830 5.2082 13 6 7.5728 -0.9358 4.3764 14 7 8.3749 -1.9199 4.0289 15 14 8.2302 0.8089 4.4904 16 1 8.8461 1.0196 5.8251 17 1 9.2520 1.0230 3.4344 18 1 7.1149 1.7713 4.3024 19 6 3.9854 -0.2342 4.9495 20 6 2.8510 -0.4680 3.9440 21 6 2.8026 3.4146 1.2758 22 6 3.3411 3.8708 -0.0841 23 6 2.3131 3.4936 -1.1595 24 8 2.1894 2.0443 -1.1797 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 4.4570 -0.6904 1.6188 31 1 4.3947 1.0587 1.2786 32 1 5.4959 1.5831 3.3809 33 1 6.4490 0.2905 2.6101 34 1 9.3073 -1.7391 3.8323 35 1 3.8817 0.7554 5.3945 36 1 3.9435 -0.9929 5.7311 37 1 1.8958 -0.2178 4.4056 38 1 2.8445 -1.5125 3.6324 39 1 1.9827 4.0659 1.5786 40 1 3.5998 3.4658 2.0174 41 1 3.4871 4.9510 -0.0780 42 1 4.2888 3.3731 -0.2898 43 1 1.3498 3.9445 -0.9213 44 1 2.6534 3.8465 -2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790659876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:51 Heat of formation + Delta-G solvation = -26.038242 kcal Electronic energy + Delta-G solvation = -25491.254056 eV Core-core repulsion = 22024.231603 eV Total energy + Delta-G solvation = -3467.022453 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91510 -39.16819 -36.95026 -34.45369 -34.23105 -33.70094 -31.60508 -30.76807 -30.08359 -27.23683 -25.86856 -24.93829 -23.42182 -23.12989 -22.02753 -21.24151 -19.63172 -18.29517 -17.57015 -16.47866 -16.33811 -16.09032 -15.43206 -14.97726 -14.70823 -14.37347 -14.22496 -14.00440 -13.90773 -13.68221 -13.51733 -13.18811 -13.13687 -12.82831 -12.41804 -12.18637 -12.12007 -11.95932 -11.82635 -11.36890 -11.18985 -11.02386 -10.98211 -10.78721 -10.54818 -10.46357 -10.35608 -10.18805 -9.53629 -9.49249 -8.67761 -8.25310 -8.17810 -7.02913 -6.13458 -3.27264 1.80498 2.84150 3.06318 3.34468 3.47622 3.53387 3.57678 4.47612 4.51537 4.52970 4.68058 4.85579 4.92893 5.02947 5.09153 5.15621 5.20434 5.26425 5.28873 5.45849 5.50621 5.64854 5.66634 5.69788 5.80446 5.84917 5.89353 5.94172 5.97068 6.05391 6.10193 6.13355 6.16087 6.27320 6.33248 6.53440 6.60637 6.77627 7.00083 7.27026 7.82673 7.86884 8.22356 8.51722 8.87309 9.65973 10.07283 11.00689 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.005299 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.148970 B = 5283.127853 C = 5882.064449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C 0.135 3.865 4 C -0.283 4.283 5 C 0.576 3.424 6 O -0.557 6.557 7 N -0.596 5.596 8 C 0.090 3.910 9 C 0.134 3.866 10 N -0.598 5.598 11 C -0.277 4.277 12 H 0.082 0.918 13 C 0.043 3.957 14 N -0.872 5.872 15 Si 0.828 3.172 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.261 1.261 19 C 0.133 3.867 20 C 0.094 3.906 21 C -0.060 4.060 22 C -0.157 4.157 23 C 0.059 3.941 24 O -0.311 6.311 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.263 0.737 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 8.869 -11.059 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C 0.087 3.913 4 C -0.287 4.287 5 C 0.365 3.635 6 O -0.436 6.436 7 N -0.328 5.328 8 C -0.034 4.034 9 C 0.008 3.992 10 N -0.321 5.321 11 C -0.404 4.404 12 H 0.100 0.900 13 C -0.159 4.159 14 N -0.511 5.511 15 Si 0.655 3.345 16 H -0.220 1.220 17 H -0.220 1.220 18 H -0.185 1.185 19 C 0.007 3.993 20 C -0.030 4.030 21 C -0.098 4.098 22 C -0.194 4.194 23 C -0.015 4.015 24 O -0.224 6.224 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.631 8.743 -10.939 18.858 hybrid contribution 0.846 1.260 0.331 1.553 sum -11.785 10.003 -10.608 18.748 Atomic orbital electron populations 1.21724 0.93542 1.02392 1.02676 1.20778 0.97161 0.90219 1.04515 1.20822 0.92989 0.93644 0.83886 1.19746 1.15876 0.99608 0.93460 1.16698 0.83005 0.79036 0.84759 1.90765 1.28560 1.66898 1.57422 1.48166 1.15636 1.38972 1.30027 1.22516 0.83638 1.01853 0.95410 1.21687 0.96044 0.93786 0.87722 1.44280 1.13621 1.46062 1.28167 1.18746 0.85288 0.99996 1.36327 0.89994 1.25173 0.95984 0.96219 0.98514 1.70178 1.06444 1.32601 1.41916 0.87630 0.79307 0.89748 0.77840 1.21956 1.22049 1.18516 1.21318 0.85470 0.99321 0.93231 1.22200 1.00176 0.93541 0.87085 1.20124 1.00702 0.91521 0.97410 1.22203 0.99523 1.02522 0.95200 1.23467 0.99528 0.77846 1.00685 1.86187 1.86410 1.21760 1.28010 0.91786 0.91643 0.92442 0.88905 0.89739 0.91167 0.90669 0.95318 0.90535 0.92720 0.95714 0.90822 0.89756 0.91545 0.90753 0.90271 0.89638 0.90126 0.91239 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.09 -1.13 5.75 -27.88 -0.16 -1.29 16 3 C 0.13 1.80 5.75 -35.98 -0.21 1.59 16 4 C -0.28 -4.13 3.41 -105.07 -0.36 -4.49 16 5 C 0.58 9.97 5.01 -14.90 -0.07 9.89 16 6 O -0.56 -11.14 16.49 5.15 0.08 -11.06 16 7 N -0.60 -10.42 2.29 -175.56 -0.40 -10.83 16 8 C 0.09 1.58 6.35 -3.37 -0.02 1.56 16 9 C 0.13 2.83 4.62 -3.36 -0.02 2.81 16 10 N -0.60 -13.83 2.72 -171.77 -0.47 -14.30 16 11 C -0.28 -7.43 9.82 -15.06 -0.15 -7.58 16 12 H 0.08 2.34 8.05 -52.49 -0.42 1.92 16 13 C 0.04 1.19 4.73 -17.43 -0.08 1.11 16 14 N -0.87 -25.50 13.97 55.49 0.78 -24.72 16 15 Si 0.83 20.60 26.54 -169.99 -4.51 16.09 16 16 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.26 -6.24 5.24 56.52 0.30 -5.94 16 19 C 0.13 2.64 6.67 -3.60 -0.02 2.62 16 20 C 0.09 1.66 6.60 -3.60 -0.02 1.64 16 21 C -0.06 -0.75 5.89 -27.91 -0.16 -0.91 16 22 C -0.16 -1.47 6.23 -26.37 -0.16 -1.64 16 23 C 0.06 0.53 7.16 37.41 0.27 0.79 16 24 O -0.31 -3.75 10.41 -14.89 -0.16 -3.91 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.31 6.01 -51.93 -0.31 1.00 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.17 6.27 -51.93 -0.33 0.84 16 32 H 0.03 0.62 6.91 -51.93 -0.36 0.26 16 33 H 0.08 1.72 5.66 -51.93 -0.29 1.43 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 37 H 0.08 1.46 6.99 -51.93 -0.36 1.09 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -31.60 341.70 -7.56 -39.16 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.22 Total: -0.38 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.81 Total: 4.79 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.09 Total: -49.85 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.07 Total: -14.97 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.51 Total: 16.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.60 -7.56 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790659876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.123 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds