Wall clock time and date at job start Tue Mar 31 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47541 * 2 1 4 4 C 1.33452 * 118.46381 * 93.16518 * 3 2 1 5 5 C 1.41798 * 118.78796 * 0.39633 * 4 3 2 6 6 O 1.21740 * 119.99940 * 262.28132 * 5 4 3 7 7 N 1.34782 * 120.00170 * 82.27527 * 5 4 3 8 8 C 1.46959 * 120.59133 * 4.76700 * 7 5 4 9 9 C 1.53818 * 108.40089 * 124.75416 * 8 7 5 10 10 N 1.46964 * 108.57573 * 49.63536 * 9 8 7 11 11 C 1.36936 * 120.59436 * 124.62864 * 10 9 8 12 12 H 1.07999 * 119.99944 * 205.72311 * 11 10 9 13 13 C 1.38812 * 119.99737 * 25.71280 * 11 10 9 14 14 N 1.31625 * 120.00147 * 219.79003 * 13 11 10 15 15 Si 1.86795 * 120.00115 * 39.79619 * 13 11 10 16 16 H 1.48499 * 109.47164 * 95.33888 * 15 13 11 17 17 H 1.48497 * 109.47468 * 215.34120 * 15 13 11 18 18 H 1.48506 * 109.46975 * 335.33885 * 15 13 11 19 19 C 1.46962 * 118.81197 * 304.65092 * 10 9 8 20 20 C 1.46964 * 120.59437 * 185.04353 * 7 5 4 21 21 C 1.50415 * 122.42972 * 180.41447 * 4 3 2 22 22 C 1.53217 * 109.56097 * 342.31097 * 21 4 3 23 23 C 1.53480 * 108.25614 * 47.35633 * 22 21 4 24 24 O 1.34351 * 118.45673 * 272.90558 * 3 2 1 25 25 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47086 * 300.00439 * 1 2 3 27 27 H 1.09002 * 109.47279 * 60.00144 * 1 2 3 28 28 H 1.09003 * 109.46865 * 119.99515 * 2 1 3 29 29 H 1.09002 * 109.47086 * 239.99561 * 2 1 3 30 30 H 1.09001 * 109.61213 * 244.54045 * 8 7 5 31 31 H 1.09002 * 109.61377 * 5.04919 * 8 7 5 32 32 H 1.08995 * 109.73855 * 289.85044 * 9 8 7 33 33 H 1.08994 * 109.67393 * 169.38556 * 9 8 7 34 34 H 0.96996 * 119.99986 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.60940 * 295.47500 * 19 10 9 36 36 H 1.09004 * 109.75291 * 175.05444 * 19 10 9 37 37 H 1.09003 * 109.61054 * 354.94789 * 20 7 5 38 38 H 1.08997 * 109.60669 * 115.29370 * 20 7 5 39 39 H 1.09000 * 109.45781 * 102.33643 * 21 4 3 40 40 H 1.08999 * 109.45595 * 222.30321 * 21 4 3 41 41 H 1.09004 * 109.70247 * 167.04316 * 22 21 4 42 42 H 1.08997 * 109.70489 * 287.61831 * 22 21 4 43 43 H 1.08999 * 109.70856 * 56.98903 * 23 22 21 44 44 H 1.08997 * 109.69913 * 177.56283 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3055 1.9988 1.1714 5 6 2.1200 1.2509 2.3617 6 8 1.0982 1.3825 3.0103 7 7 3.0748 0.3940 2.7750 8 6 4.3559 0.3008 2.0610 9 6 5.4924 0.5385 3.0698 10 7 5.2687 -0.3235 4.2389 11 6 6.2384 -1.1946 4.6583 12 1 5.9651 -2.0830 5.2082 13 6 7.5728 -0.9358 4.3764 14 7 8.3749 -1.9199 4.0289 15 14 8.2302 0.8089 4.4904 16 1 8.8461 1.0196 5.8251 17 1 9.2520 1.0230 3.4344 18 1 7.1149 1.7713 4.3024 19 6 3.9854 -0.2342 4.9495 20 6 2.8510 -0.4680 3.9440 21 6 2.8026 3.4146 1.2758 22 6 3.3411 3.8708 -0.0841 23 6 2.3131 3.4936 -1.1595 24 8 2.1894 2.0443 -1.1797 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 4.4570 -0.6904 1.6188 31 1 4.3947 1.0587 1.2786 32 1 5.4959 1.5831 3.3809 33 1 6.4490 0.2905 2.6101 34 1 9.3073 -1.7391 3.8323 35 1 3.8817 0.7554 5.3945 36 1 3.9435 -0.9929 5.7311 37 1 1.8958 -0.2178 4.4056 38 1 2.8445 -1.5125 3.6324 39 1 1.9827 4.0659 1.5786 40 1 3.5998 3.4658 2.0174 41 1 3.4871 4.9510 -0.0780 42 1 4.2888 3.3731 -0.2898 43 1 1.3498 3.9445 -0.9213 44 1 2.6534 3.8465 -2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790659876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:51 Heat of formation + Delta-G solvation = -45.266001 kcal Electronic energy + Delta-G solvation = -25492.087834 eV Core-core repulsion = 22024.231603 eV Total energy + Delta-G solvation = -3467.856231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05534 -40.36197 -38.55850 -35.72439 -35.24761 -35.08765 -33.47964 -32.26224 -31.15902 -28.87884 -26.81431 -26.10965 -24.97351 -24.74796 -23.08726 -22.55383 -20.99655 -19.58650 -18.90817 -18.03383 -17.53047 -17.41140 -16.76475 -16.38026 -16.06683 -15.98938 -15.45409 -15.37998 -15.11103 -14.79688 -14.70553 -14.53855 -14.39575 -14.17593 -13.98057 -13.89580 -13.42623 -13.04061 -12.84522 -12.78071 -12.53320 -12.35503 -12.23116 -12.14031 -12.11352 -11.88134 -11.75234 -11.48915 -11.44007 -10.85363 -10.64250 -9.85669 -9.29058 -8.90645 -8.26068 -5.37045 0.75741 1.33972 1.45921 1.51864 1.53281 2.05903 2.30592 2.44357 2.89908 3.37691 3.53557 3.68972 3.89624 3.99509 4.11206 4.11905 4.16234 4.19895 4.23330 4.34220 4.35397 4.42639 4.49930 4.56747 4.60092 4.67866 4.73923 4.76642 4.84938 4.87944 4.90857 4.95749 4.98026 5.13424 5.14460 5.17874 5.23343 5.29040 5.54186 5.83926 6.09453 6.30694 6.47367 6.88078 7.14653 7.61512 8.05420 8.91548 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.005299 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.148970 B = 5283.127853 C = 5882.064449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C 0.152 3.848 4 C -0.311 4.311 5 C 0.583 3.417 6 O -0.587 6.587 7 N -0.599 5.599 8 C 0.107 3.893 9 C 0.132 3.868 10 N -0.610 5.610 11 C -0.269 4.269 12 H 0.054 0.946 13 C -0.002 4.002 14 N -0.917 5.917 15 Si 0.890 3.110 16 H -0.302 1.302 17 H -0.291 1.291 18 H -0.246 1.246 19 C 0.133 3.867 20 C 0.103 3.897 21 C -0.061 4.061 22 C -0.150 4.150 23 C 0.053 3.947 24 O -0.316 6.316 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.264 0.736 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 10.753 -13.074 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C 0.103 3.897 4 C -0.316 4.316 5 C 0.374 3.626 6 O -0.469 6.469 7 N -0.330 5.330 8 C -0.018 4.018 9 C 0.006 3.994 10 N -0.334 5.334 11 C -0.397 4.397 12 H 0.072 0.928 13 C -0.201 4.201 14 N -0.559 5.559 15 Si 0.717 3.283 16 H -0.231 1.231 17 H -0.218 1.218 18 H -0.170 1.170 19 C 0.007 3.993 20 C -0.021 4.021 21 C -0.098 4.098 22 C -0.187 4.187 23 C -0.020 4.020 24 O -0.228 6.228 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.526 10.668 -12.971 21.563 hybrid contribution 1.024 0.639 0.943 1.532 sum -12.502 11.307 -12.028 20.707 Atomic orbital electron populations 1.21662 0.92709 1.03198 1.02076 1.20845 0.97866 0.90077 1.04454 1.20873 0.91057 0.93766 0.83983 1.19737 1.18571 1.00655 0.92627 1.17061 0.82116 0.78295 0.85145 1.90744 1.29723 1.67716 1.58711 1.48210 1.15814 1.39080 1.29933 1.22289 0.82229 1.02576 0.94684 1.21706 0.96869 0.93159 0.87693 1.44383 1.13771 1.45908 1.29300 1.18685 0.86245 0.99613 1.35176 0.92813 1.25596 0.96255 0.99086 0.99179 1.70238 1.06772 1.34505 1.44360 0.86662 0.78916 0.85770 0.76963 1.23088 1.21800 1.17017 1.21401 0.84672 0.99382 0.93805 1.22034 0.99306 0.93928 0.86874 1.20156 1.00272 0.90322 0.99077 1.22201 0.99133 1.04111 0.93290 1.23817 1.00055 0.75911 1.02237 1.86189 1.85768 1.23769 1.27093 0.90379 0.93995 0.91133 0.90658 0.88058 0.91300 0.88297 0.95236 0.92006 0.92698 0.95701 0.90573 0.89208 0.91190 0.90829 0.91625 0.86963 0.90508 0.90388 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.89 71.98 0.71 -2.25 16 2 C -0.10 -2.22 5.75 29.85 0.17 -2.05 16 3 C 0.15 3.72 5.75 24.60 0.14 3.86 16 4 C -0.31 -8.59 3.41 -20.16 -0.07 -8.65 16 5 C 0.58 19.62 5.01 85.12 0.43 20.05 16 6 O -0.59 -23.26 16.49 -4.48 -0.07 -23.34 16 7 N -0.60 -20.37 2.29 -827.55 -1.89 -22.26 16 8 C 0.11 3.58 6.35 86.57 0.55 4.13 16 9 C 0.13 5.41 4.62 86.57 0.40 5.81 16 10 N -0.61 -28.04 2.72 -697.35 -1.90 -29.94 16 11 C -0.27 -14.63 9.82 84.03 0.83 -13.81 16 12 H 0.05 3.17 8.05 -2.91 -0.02 3.15 16 13 C 0.00 -0.13 4.73 84.86 0.40 0.27 16 14 N -0.92 -54.56 13.97 21.65 0.30 -54.25 16 15 Si 0.89 42.98 26.54 68.60 1.82 44.80 16 16 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 17 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 18 H -0.25 -11.18 5.24 99.48 0.52 -10.66 16 19 C 0.13 5.24 6.67 86.42 0.58 5.81 16 20 C 0.10 3.57 6.60 86.41 0.57 4.14 16 21 C -0.06 -1.39 5.89 29.83 0.18 -1.21 16 22 C -0.15 -2.31 6.23 30.83 0.19 -2.11 16 23 C 0.05 0.74 7.16 72.14 0.52 1.26 16 24 O -0.32 -6.59 10.41 -76.20 -0.79 -7.39 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 2.03 6.01 -2.39 -0.01 2.02 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 2.87 6.27 -2.39 -0.01 2.86 16 32 H 0.03 1.22 6.91 -2.39 -0.02 1.20 16 33 H 0.06 2.73 5.66 -2.39 -0.01 2.71 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 2.91 7.93 -2.38 -0.02 2.90 16 37 H 0.09 3.06 6.99 -2.39 -0.02 3.04 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.06 341.70 3.85 -64.21 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.79 Total: 12.92 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 5.59 Total: 15.25 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.49 Total: -106.45 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.87 Total: -30.72 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.82 Total: 44.80 kcal Total: -68.06 3.85 -64.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790659876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.942 kcal (2) G-P(sol) polarization free energy of solvation -68.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds