Wall clock time and date at job start Tue Mar 31 2020 06:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99703 * 2 1 4 4 N 1.46904 * 109.46791 * 124.08048 * 3 2 1 5 5 C 1.46893 * 111.00331 * 300.49028 * 4 3 2 6 6 C 1.50706 * 109.47247 * 288.40828 * 5 4 3 7 7 H 1.07992 * 119.99907 * 356.25035 * 6 5 4 8 8 C 1.37876 * 120.00166 * 176.25360 * 6 5 4 9 9 N 1.31511 * 120.00139 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00027 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47344 * 89.99806 * 10 8 6 12 12 H 1.48498 * 109.47171 * 210.00079 * 10 8 6 13 13 H 1.48508 * 109.46920 * 329.99759 * 10 8 6 14 14 C 1.46896 * 110.99852 * 64.44596 * 4 3 2 15 15 N 1.46503 * 109.47066 * 81.04521 * 14 4 3 16 16 C 1.33874 * 122.76357 * 90.02408 * 15 14 4 17 17 O 1.21230 * 125.39742 * 0.28594 * 16 15 14 18 18 C 1.51311 * 109.20677 * 180.02562 * 16 15 14 19 19 C 1.54227 * 103.55587 * 0.02562 * 18 16 15 20 20 C 1.53009 * 110.60335 * 241.32593 * 19 18 16 21 21 C 1.52997 * 110.61038 * 118.51817 * 19 18 16 22 22 C 1.52998 * 109.47347 * 180.02562 * 21 19 18 23 23 C 1.33876 * 122.75892 * 270.04380 * 15 14 4 24 24 O 1.21221 * 125.40210 * 359.96393 * 23 15 14 25 25 H 1.08002 * 120.00120 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00632 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99937 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47338 * 4.08603 * 3 2 1 29 29 H 1.08996 * 109.47661 * 244.08364 * 3 2 1 30 30 H 1.08998 * 109.47099 * 48.40470 * 5 4 3 31 31 H 1.08996 * 109.47726 * 168.40760 * 5 4 3 32 32 H 0.96996 * 120.00274 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47338 * 321.04323 * 14 4 3 34 34 H 1.09004 * 109.47056 * 201.04070 * 14 4 3 35 35 H 1.09005 * 110.60230 * 118.51623 * 18 16 15 36 36 H 1.09002 * 110.60789 * 241.48024 * 18 16 15 37 37 H 1.08997 * 109.47433 * 59.99676 * 20 19 18 38 38 H 1.08995 * 109.46875 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46716 * 299.99595 * 20 19 18 40 40 H 1.09000 * 109.46729 * 300.00070 * 21 19 18 41 41 H 1.09003 * 109.47341 * 59.99306 * 21 19 18 42 42 H 1.09005 * 109.46984 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.46652 * 299.99603 * 22 21 19 44 44 H 1.08997 * 109.47182 * 59.99156 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9804 1.3411 1.1472 5 6 2.2459 1.2102 2.4126 6 6 1.4777 2.4786 2.6810 7 1 1.5772 3.3217 2.0136 8 6 0.6478 2.5627 3.7789 9 7 -0.0223 3.6698 4.0134 10 14 0.4762 1.1047 4.9339 11 1 1.4964 1.2017 6.0085 12 1 -0.8805 1.1084 5.5376 13 1 0.6763 -0.1553 4.1737 14 6 4.0133 0.3034 1.0282 15 7 5.0742 0.7708 0.1326 16 6 6.1457 1.4448 0.5685 17 8 6.3680 1.7393 1.7232 18 6 7.0383 1.7751 -0.6078 19 6 6.2888 1.1693 -1.8118 20 6 7.1396 0.0936 -2.4900 21 6 5.9062 2.2613 -2.8129 22 6 5.1648 1.6328 -3.9945 23 6 5.0519 0.5594 -1.1892 24 8 4.1789 -0.0273 -1.7918 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3574 2.1323 0.0732 29 1 2.6341 1.3953 -0.9242 30 1 1.5518 0.3725 2.3448 31 1 2.9505 1.0334 3.2251 32 1 -0.6064 3.7288 4.7855 33 1 3.5698 -0.6059 0.6226 34 1 4.4339 0.0950 2.0120 35 1 7.1383 2.8546 -0.7222 36 1 8.0164 1.3086 -0.4900 37 1 7.3596 -0.6997 -1.7755 38 1 6.5931 -0.3218 -3.3366 39 1 8.0722 0.5356 -2.8407 40 1 5.2597 2.9909 -2.3252 41 1 6.8080 2.7575 -3.1717 42 1 4.8918 2.4109 -4.7075 43 1 5.8110 0.9030 -4.4823 44 1 4.2630 1.1370 -3.6354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:30 Heat of formation + Delta-G solvation = -33.591975 kcal Electronic energy + Delta-G solvation = -25225.869072 eV Core-core repulsion = 21758.519065 eV Total energy + Delta-G solvation = -3467.350007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05003 -38.52619 -37.67145 -36.26957 -35.06525 -32.79263 -32.12807 -30.85871 -28.63303 -27.77086 -26.31568 -25.07869 -23.83772 -22.92522 -21.07622 -20.86330 -19.31474 -18.61236 -17.00977 -16.82862 -16.43464 -16.23760 -15.29566 -15.06956 -14.95491 -14.67474 -14.39781 -14.03017 -14.01409 -13.80072 -13.41018 -13.22736 -12.73634 -12.65017 -12.36574 -12.24895 -12.00764 -11.89296 -11.86113 -11.42400 -11.22158 -11.13227 -10.90047 -10.84724 -10.69260 -10.47806 -10.23195 -9.96979 -9.69919 -9.56984 -9.37569 -8.80562 -8.55217 -7.56590 -6.04260 -4.01252 1.65125 2.60746 2.82362 2.90562 3.29525 3.36480 3.37798 3.91260 4.14692 4.24906 4.42623 4.44586 4.77843 4.81077 5.07908 5.20771 5.23160 5.27747 5.29895 5.32322 5.36326 5.44521 5.57477 5.58276 5.66035 5.66838 5.70937 5.80283 5.83637 6.00811 6.05318 6.25039 6.37382 6.54417 6.74185 6.90213 7.02511 7.12415 7.27230 7.48200 7.53281 7.75629 7.88865 7.98507 8.63314 9.04069 9.57020 11.08934 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.004933 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.353791 B = 5674.563352 C = 6267.198738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.090 3.910 4 N -0.529 5.529 5 C 0.165 3.835 6 C -0.503 4.503 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.256 3.744 15 N -0.561 5.561 16 C 0.530 3.470 17 O -0.473 6.473 18 C -0.153 4.153 19 C -0.097 4.097 20 C -0.133 4.133 21 C -0.102 4.102 22 C -0.163 4.163 23 C 0.535 3.465 24 O -0.475 6.475 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.005 0.995 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 -7.365 -14.952 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.197 4.197 3 C -0.038 4.038 4 N -0.253 5.253 5 C 0.039 3.961 6 C -0.541 4.541 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.045 3.955 15 N -0.304 5.304 16 C 0.318 3.682 17 O -0.343 6.343 18 C -0.192 4.192 19 C -0.101 4.101 20 C -0.191 4.191 21 C -0.140 4.140 22 C -0.220 4.220 23 C 0.323 3.677 24 O -0.346 6.346 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.878 -6.985 -14.452 21.219 hybrid contribution -0.674 -1.459 0.899 1.842 sum 13.204 -8.444 -13.554 20.721 Atomic orbital electron populations 1.23763 0.95975 1.01394 1.00541 1.23438 0.96663 0.99484 1.00160 1.21321 0.94797 0.94911 0.92762 1.61905 1.13993 1.44855 1.04552 1.20230 0.92623 0.98145 0.85082 1.20908 1.23868 0.98576 1.10767 0.90242 1.24836 0.95289 0.95582 0.97306 1.69881 1.28988 1.26229 1.28777 0.86932 0.77660 0.83914 0.81738 1.20132 1.21160 1.19159 1.22251 0.86493 0.92876 0.93911 1.46940 1.22326 1.51080 1.10082 1.20672 0.81563 0.75832 0.90161 1.90791 1.73932 1.49884 1.19701 1.22703 0.99974 1.04952 0.91616 1.21531 0.94057 0.98100 0.96379 1.21798 0.99280 0.96900 1.01079 1.21466 1.01409 0.95810 0.95310 1.21954 1.01731 1.00915 0.97388 1.20635 0.87359 0.78068 0.81637 1.90710 1.39314 1.38850 1.65722 0.89549 0.88103 0.88603 0.89182 0.91506 0.97766 0.95861 0.92670 0.91306 0.88413 0.86219 0.86479 0.92158 0.90674 0.90803 0.91031 0.90288 0.92560 0.92336 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 29.01 0.42 -2.75 16 2 C -0.18 -3.28 7.40 -36.03 -0.27 -3.54 16 3 C 0.09 1.78 5.50 -4.98 -0.03 1.75 16 4 N -0.53 -11.24 4.76 -241.44 -1.15 -12.39 16 5 C 0.16 4.02 3.65 -4.98 -0.02 4.00 16 6 C -0.50 -14.35 9.10 -34.44 -0.31 -14.66 16 7 H 0.08 2.49 7.84 -52.49 -0.41 2.08 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 10 Si 0.87 21.69 27.54 -169.99 -4.68 17.01 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.39 6.44 56.52 0.36 -6.03 16 14 C 0.26 4.57 5.27 -63.32 -0.33 4.23 16 15 N -0.56 -8.63 2.77 -118.62 -0.33 -8.96 16 16 C 0.53 7.82 8.08 -11.09 -0.09 7.73 16 17 O -0.47 -8.84 17.47 5.60 0.10 -8.75 16 18 C -0.15 -1.41 6.32 -26.94 -0.17 -1.58 16 19 C -0.10 -0.91 0.78 -154.71 -0.12 -1.03 16 20 C -0.13 -0.94 8.10 37.16 0.30 -0.64 16 21 C -0.10 -0.88 4.87 -26.73 -0.13 -1.01 16 22 C -0.16 -1.47 9.27 37.16 0.34 -1.13 16 23 C 0.54 7.25 5.84 -11.09 -0.06 7.19 16 24 O -0.47 -7.37 13.90 5.61 0.08 -7.29 16 25 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.10 1.86 7.84 -52.48 -0.41 1.44 16 27 H 0.10 1.68 6.68 -52.49 -0.35 1.33 16 28 H 0.09 1.98 6.99 -51.93 -0.36 1.61 16 29 H 0.07 1.26 5.74 -51.93 -0.30 0.96 16 30 H 0.00 0.11 5.50 -51.93 -0.29 -0.17 16 31 H 0.02 0.58 7.26 -51.93 -0.38 0.20 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.07 1.17 5.71 -51.93 -0.30 0.87 16 34 H 0.10 1.77 7.24 -51.93 -0.38 1.39 16 35 H 0.12 0.95 7.74 -51.93 -0.40 0.55 16 36 H 0.12 0.79 7.74 -51.93 -0.40 0.38 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 44 H 0.07 0.86 6.09 -51.93 -0.32 0.55 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -33.31 347.20 -7.21 -40.52 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.66 Total: 1.00 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.57 Total: 0.54 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.70 Total: -48.27 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.18 Total: -16.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.68 Total: 17.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.31 -7.21 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.932 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds