Wall clock time and date at job start Tue Mar 31 2020 06:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99703 * 2 1 4 4 N 1.46904 * 109.46791 * 124.08048 * 3 2 1 5 5 C 1.46893 * 111.00331 * 300.49028 * 4 3 2 6 6 C 1.50706 * 109.47247 * 288.40828 * 5 4 3 7 7 H 1.07992 * 119.99907 * 356.25035 * 6 5 4 8 8 C 1.37876 * 120.00166 * 176.25360 * 6 5 4 9 9 N 1.31511 * 120.00139 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00027 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47344 * 89.99806 * 10 8 6 12 12 H 1.48498 * 109.47171 * 210.00079 * 10 8 6 13 13 H 1.48508 * 109.46920 * 329.99759 * 10 8 6 14 14 C 1.46896 * 110.99852 * 64.44596 * 4 3 2 15 15 N 1.46503 * 109.47066 * 81.04521 * 14 4 3 16 16 C 1.33874 * 122.76357 * 90.02408 * 15 14 4 17 17 O 1.21230 * 125.39742 * 0.28594 * 16 15 14 18 18 C 1.51311 * 109.20677 * 180.02562 * 16 15 14 19 19 C 1.54227 * 103.55587 * 0.02562 * 18 16 15 20 20 C 1.53009 * 110.60335 * 241.32593 * 19 18 16 21 21 C 1.52997 * 110.61038 * 118.51817 * 19 18 16 22 22 C 1.52998 * 109.47347 * 180.02562 * 21 19 18 23 23 C 1.33876 * 122.75892 * 270.04380 * 15 14 4 24 24 O 1.21221 * 125.40210 * 359.96393 * 23 15 14 25 25 H 1.08002 * 120.00120 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00632 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99937 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47338 * 4.08603 * 3 2 1 29 29 H 1.08996 * 109.47661 * 244.08364 * 3 2 1 30 30 H 1.08998 * 109.47099 * 48.40470 * 5 4 3 31 31 H 1.08996 * 109.47726 * 168.40760 * 5 4 3 32 32 H 0.96996 * 120.00274 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47338 * 321.04323 * 14 4 3 34 34 H 1.09004 * 109.47056 * 201.04070 * 14 4 3 35 35 H 1.09005 * 110.60230 * 118.51623 * 18 16 15 36 36 H 1.09002 * 110.60789 * 241.48024 * 18 16 15 37 37 H 1.08997 * 109.47433 * 59.99676 * 20 19 18 38 38 H 1.08995 * 109.46875 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46716 * 299.99595 * 20 19 18 40 40 H 1.09000 * 109.46729 * 300.00070 * 21 19 18 41 41 H 1.09003 * 109.47341 * 59.99306 * 21 19 18 42 42 H 1.09005 * 109.46984 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.46652 * 299.99603 * 22 21 19 44 44 H 1.08997 * 109.47182 * 59.99156 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9804 1.3411 1.1472 5 6 2.2459 1.2102 2.4126 6 6 1.4777 2.4786 2.6810 7 1 1.5772 3.3217 2.0136 8 6 0.6478 2.5627 3.7789 9 7 -0.0223 3.6698 4.0134 10 14 0.4762 1.1047 4.9339 11 1 1.4964 1.2017 6.0085 12 1 -0.8805 1.1084 5.5376 13 1 0.6763 -0.1553 4.1737 14 6 4.0133 0.3034 1.0282 15 7 5.0742 0.7708 0.1326 16 6 6.1457 1.4448 0.5685 17 8 6.3680 1.7393 1.7232 18 6 7.0383 1.7751 -0.6078 19 6 6.2888 1.1693 -1.8118 20 6 7.1396 0.0936 -2.4900 21 6 5.9062 2.2613 -2.8129 22 6 5.1648 1.6328 -3.9945 23 6 5.0519 0.5594 -1.1892 24 8 4.1789 -0.0273 -1.7918 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3574 2.1323 0.0732 29 1 2.6341 1.3953 -0.9242 30 1 1.5518 0.3725 2.3448 31 1 2.9505 1.0334 3.2251 32 1 -0.6064 3.7288 4.7855 33 1 3.5698 -0.6059 0.6226 34 1 4.4339 0.0950 2.0120 35 1 7.1383 2.8546 -0.7222 36 1 8.0164 1.3086 -0.4900 37 1 7.3596 -0.6997 -1.7755 38 1 6.5931 -0.3218 -3.3366 39 1 8.0722 0.5356 -2.8407 40 1 5.2597 2.9909 -2.3252 41 1 6.8080 2.7575 -3.1717 42 1 4.8918 2.4109 -4.7075 43 1 5.8110 0.9030 -4.4823 44 1 4.2630 1.1370 -3.6354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:29 Heat of formation + Delta-G solvation = -56.808176 kcal Electronic energy + Delta-G solvation = -25226.875802 eV Core-core repulsion = 21758.519065 eV Total energy + Delta-G solvation = -3468.356737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.12966 -39.70867 -39.21427 -37.29823 -36.25396 -34.84035 -33.73691 -31.84515 -30.02938 -29.05752 -27.68550 -26.01376 -25.49203 -23.89837 -22.79061 -22.02595 -20.68786 -19.79991 -18.95705 -18.06630 -17.82270 -17.41467 -16.77346 -16.33199 -16.18643 -15.96922 -15.69848 -15.64951 -15.33351 -14.83894 -14.64356 -14.31468 -14.22998 -14.00086 -13.59733 -13.34005 -13.15490 -12.90984 -12.88470 -12.70718 -12.61859 -12.51289 -12.43866 -12.29498 -11.96375 -11.91191 -11.63375 -11.57028 -11.25043 -10.93293 -10.80934 -10.73323 -10.32074 -9.25521 -8.30468 -6.33447 0.55471 1.30035 1.32483 1.33516 1.42891 1.48841 1.81582 2.31422 3.03112 3.05172 3.11301 3.27334 3.44495 3.76903 3.85261 3.94346 4.06587 4.11258 4.21690 4.34723 4.44149 4.50411 4.55125 4.67741 4.72799 4.75423 4.77074 4.85916 4.90489 5.00121 5.03905 5.06892 5.12610 5.19184 5.37426 5.46851 5.54637 5.62007 5.68483 5.87180 5.93087 6.16520 6.39987 6.48523 6.70285 6.82008 7.29088 8.86384 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.004933 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.353791 B = 5674.563352 C = 6267.198738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.188 4.188 3 C 0.100 3.900 4 N -0.547 5.547 5 C 0.179 3.821 6 C -0.509 4.509 7 H 0.033 0.967 8 C 0.014 3.986 9 N -0.946 5.946 10 Si 0.940 3.060 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.248 1.248 14 C 0.258 3.742 15 N -0.570 5.570 16 C 0.521 3.479 17 O -0.522 6.522 18 C -0.136 4.136 19 C -0.085 4.085 20 C -0.130 4.130 21 C -0.102 4.102 22 C -0.161 4.161 23 C 0.526 3.474 24 O -0.497 6.497 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.022 0.978 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.342 -9.268 -16.173 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.207 4.207 3 C -0.027 4.027 4 N -0.271 5.271 5 C 0.052 3.948 6 C -0.547 4.547 7 H 0.051 0.949 8 C -0.183 4.183 9 N -0.587 5.587 10 Si 0.763 3.237 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.171 1.171 14 C 0.046 3.954 15 N -0.313 5.313 16 C 0.312 3.688 17 O -0.396 6.396 18 C -0.175 4.175 19 C -0.088 4.088 20 C -0.188 4.188 21 C -0.139 4.139 22 C -0.219 4.219 23 C 0.317 3.683 24 O -0.370 6.370 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.099 -8.899 -15.730 24.203 hybrid contribution -1.376 -0.788 1.170 1.971 sum 14.723 -9.686 -14.560 22.860 Atomic orbital electron populations 1.23930 0.95843 1.02129 0.99211 1.23404 0.96944 0.99033 1.01323 1.21116 0.94246 0.94834 0.92536 1.61759 1.14628 1.47079 1.03654 1.19913 0.92351 0.95851 0.86671 1.21073 1.24587 0.98990 1.10055 0.94893 1.25733 0.94754 0.98711 0.99114 1.70034 1.30082 1.28766 1.29803 0.85824 0.77951 0.80525 0.79384 1.19315 1.20458 1.17129 1.22110 0.86243 0.92350 0.94667 1.47123 1.21913 1.51492 1.10732 1.21693 0.81732 0.74453 0.90942 1.90763 1.75006 1.51745 1.22059 1.22836 1.00041 1.06463 0.88144 1.21626 0.91959 0.98770 0.96473 1.21860 1.00037 0.96186 1.00674 1.21538 1.02601 0.95122 0.94647 1.21931 1.00771 1.01365 0.97788 1.21523 0.88503 0.77455 0.80855 1.90696 1.40587 1.39825 1.65860 0.86610 0.89566 0.87089 0.92515 0.90800 0.97266 0.96002 0.92400 0.90319 0.89011 0.84251 0.82783 0.92065 0.91073 0.87359 0.93045 0.86547 0.91860 0.90590 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.04 14.32 67.78 0.97 -5.07 16 2 C -0.19 -6.87 7.40 25.64 0.19 -6.68 16 3 C 0.10 4.11 5.50 85.56 0.47 4.58 16 4 N -0.55 -23.90 4.76 -917.77 -4.37 -28.27 16 5 C 0.18 8.86 3.65 85.56 0.31 9.17 16 6 C -0.51 -30.22 9.10 25.60 0.23 -29.99 16 7 H 0.03 2.20 7.84 -2.91 -0.02 2.18 16 8 C 0.01 0.86 5.47 84.65 0.46 1.32 16 9 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 10 Si 0.94 44.87 27.54 68.60 1.89 46.76 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.25 -10.98 6.44 99.48 0.64 -10.34 16 14 C 0.26 9.27 5.27 170.81 0.90 10.17 16 15 N -0.57 -17.31 2.77 -767.03 -2.13 -19.44 16 16 C 0.52 14.95 8.08 87.99 0.71 15.66 16 17 O -0.52 -19.67 17.47 -2.87 -0.05 -19.72 16 18 C -0.14 -2.07 6.32 30.46 0.19 -1.88 16 19 C -0.09 -1.35 0.78 -52.31 -0.04 -1.39 16 20 C -0.13 -1.31 8.10 71.99 0.58 -0.72 16 21 C -0.10 -1.46 4.87 30.59 0.15 -1.31 16 22 C -0.16 -2.60 9.27 71.98 0.67 -1.93 16 23 C 0.53 13.73 5.84 87.99 0.51 14.25 16 24 O -0.50 -15.20 13.90 -2.85 -0.04 -15.24 16 25 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 26 H 0.09 3.25 7.84 -2.91 -0.02 3.22 16 27 H 0.11 3.75 6.68 -2.91 -0.02 3.73 16 28 H 0.06 2.67 6.99 -2.39 -0.02 2.65 16 29 H 0.07 2.88 5.74 -2.39 -0.01 2.87 16 30 H 0.01 0.47 5.50 -2.39 -0.01 0.45 16 31 H 0.02 1.09 7.26 -2.39 -0.02 1.07 16 32 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.08 2.64 5.71 -2.39 -0.01 2.63 16 34 H 0.09 3.37 7.24 -2.39 -0.02 3.35 16 35 H 0.14 1.69 7.74 -2.38 -0.02 1.67 16 36 H 0.15 1.30 7.74 -2.39 -0.02 1.28 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.81 6.33 -2.39 -0.02 0.80 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.08 0.95 6.40 -2.39 -0.02 0.93 16 44 H 0.04 0.94 6.09 -2.39 -0.01 0.93 16 Total: -1.00 -76.91 347.20 2.85 -74.06 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.92 Total: 15.49 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.32 Total: 6.18 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -6.19 Total: -107.55 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.09 Total: -34.95 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.89 Total: 46.76 kcal Total: -76.91 2.85 -74.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.255 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds