Wall clock time and date at job start Tue Mar 31 2020 06:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00002 * 2 1 4 4 N 1.46897 * 109.47132 * 125.14322 * 3 2 1 5 5 C 1.46897 * 111.00307 * 164.15036 * 4 3 2 6 6 C 1.50707 * 109.47015 * 293.95331 * 5 4 3 7 7 H 1.08003 * 119.99709 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00072 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00024 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47336 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47301 * 299.99989 * 10 8 6 13 13 H 1.48503 * 109.47198 * 59.99933 * 10 8 6 14 14 C 1.46901 * 110.99975 * 288.10225 * 4 3 2 15 15 N 1.46497 * 109.47466 * 151.64481 * 14 4 3 16 16 C 1.33880 * 122.76179 * 100.74702 * 15 14 4 17 17 O 1.21223 * 125.39933 * 359.97438 * 16 15 14 18 18 C 1.51320 * 109.20514 * 180.02562 * 16 15 14 19 19 C 1.54225 * 103.55308 * 359.97438 * 18 16 15 20 20 C 1.53006 * 110.60373 * 118.51943 * 19 18 16 21 21 C 1.52998 * 110.60691 * 241.32846 * 19 18 16 22 22 C 1.53005 * 109.47278 * 180.02562 * 21 19 18 23 23 C 1.33879 * 122.76395 * 280.46025 * 15 14 4 24 24 O 1.21227 * 125.39208 * 359.97169 * 23 15 14 25 25 H 1.08004 * 119.99873 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99993 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99873 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47562 * 5.13865 * 3 2 1 29 29 H 1.09003 * 109.46925 * 245.14279 * 3 2 1 30 30 H 1.08998 * 109.47533 * 173.95492 * 5 4 3 31 31 H 1.09004 * 109.47253 * 53.94924 * 5 4 3 32 32 H 0.97003 * 119.99724 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.47382 * 271.64627 * 14 4 3 34 34 H 1.09003 * 109.47385 * 31.64468 * 14 4 3 35 35 H 1.08995 * 110.60796 * 118.51576 * 18 16 15 36 36 H 1.09000 * 110.60227 * 241.48398 * 18 16 15 37 37 H 1.09006 * 109.46844 * 59.99841 * 20 19 18 38 38 H 1.08997 * 109.47380 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47407 * 300.00248 * 20 19 18 40 40 H 1.09005 * 109.47168 * 300.00373 * 21 19 18 41 41 H 1.08997 * 109.47371 * 60.00528 * 21 19 18 42 42 H 1.08994 * 109.46895 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.46860 * 299.99991 * 22 21 19 44 44 H 1.08997 * 109.46955 * 59.99702 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3305 1.1325 5 6 4.0019 2.3902 0.9632 6 6 4.8791 2.0674 -0.2189 7 1 4.7087 1.1649 -0.7873 8 6 5.8991 2.9239 -0.5748 9 7 6.1063 4.0231 0.1170 10 14 6.9868 2.5234 -2.0397 11 1 8.0001 3.5953 -2.2117 12 1 7.6720 1.2265 -1.8075 13 1 6.1527 2.4301 -3.2648 14 6 2.2807 1.4838 2.4049 15 7 3.0529 0.8564 3.4801 16 6 3.8119 1.5577 4.3313 17 8 3.9514 2.7618 4.3193 18 6 4.4690 0.6090 5.3100 19 6 3.9522 -0.7767 4.8725 20 6 5.1149 -1.6745 4.4445 21 6 3.1533 -1.4339 5.9997 22 6 2.6543 -2.8050 5.5390 23 6 3.0534 -0.4649 3.6960 24 8 2.4340 -1.2821 3.0494 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3588 2.1316 0.0920 29 1 2.6193 1.4037 -0.9325 30 1 4.6143 2.4579 1.8623 31 1 3.4994 3.3425 0.7934 32 1 6.8237 4.6259 -0.1336 33 1 2.1494 2.5438 2.6226 34 1 1.3045 1.0044 2.3313 35 1 5.5543 0.6590 5.2230 36 1 4.1542 0.8310 6.3297 37 1 5.8025 -1.8019 5.2806 38 1 4.7296 -2.6475 4.1399 39 1 5.6411 -1.2138 3.6084 40 1 3.7919 -1.5553 6.8748 41 1 2.3013 -0.8043 6.2562 42 1 2.0855 -3.2733 6.3422 43 1 2.0158 -2.6839 4.6638 44 1 3.5064 -3.4344 5.2827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:33 Heat of formation + Delta-G solvation = -40.912009 kcal Electronic energy + Delta-G solvation = -25220.410140 eV Core-core repulsion = 21752.742712 eV Total energy + Delta-G solvation = -3467.667428 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80352 -38.33996 -37.28780 -36.05948 -34.86721 -33.19570 -32.13494 -30.76256 -28.33410 -27.20325 -26.11085 -24.92708 -23.88017 -22.86940 -21.10486 -20.54064 -19.27457 -18.65718 -16.89698 -16.68664 -16.19648 -15.93023 -15.13499 -14.99761 -14.75586 -14.65538 -14.14758 -13.85990 -13.75353 -13.59100 -13.24597 -13.02042 -12.95144 -12.38071 -12.26466 -12.07598 -11.91681 -11.82686 -11.70249 -11.43619 -11.08498 -11.03664 -10.83510 -10.78132 -10.76179 -10.31915 -10.05624 -9.98037 -9.56410 -9.44701 -9.27753 -8.87243 -8.44497 -7.47744 -6.03140 -4.06416 1.89038 2.64885 2.86624 3.14263 3.32091 3.36363 3.39199 4.10218 4.33797 4.40637 4.43289 4.64214 4.90819 4.98291 5.18778 5.29679 5.31538 5.42873 5.46872 5.48327 5.54029 5.56826 5.63145 5.69716 5.76877 5.80806 5.84189 5.90899 5.91938 6.07591 6.18693 6.32632 6.41097 6.47114 6.98022 7.05715 7.17778 7.30852 7.32533 7.71070 7.73479 7.95845 8.09790 8.22018 8.43951 9.00449 9.57682 11.06926 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.005645 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.797590 B = 4958.962675 C = 5782.520912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.117 4.117 3 C 0.090 3.910 4 N -0.542 5.542 5 C 0.194 3.806 6 C -0.513 4.513 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.287 1.287 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.264 3.736 15 N -0.558 5.558 16 C 0.526 3.474 17 O -0.475 6.475 18 C -0.152 4.152 19 C -0.098 4.098 20 C -0.134 4.134 21 C -0.100 4.100 22 C -0.163 4.163 23 C 0.543 3.457 24 O -0.471 6.471 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.102 0.898 30 H 0.034 0.966 31 H -0.006 1.006 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 -10.683 11.688 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.136 4.136 3 C -0.038 4.038 4 N -0.268 5.268 5 C 0.070 3.930 6 C -0.552 4.552 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.213 1.213 12 H -0.202 1.202 13 H -0.202 1.202 14 C 0.053 3.947 15 N -0.301 5.301 16 C 0.313 3.687 17 O -0.346 6.346 18 C -0.192 4.192 19 C -0.101 4.101 20 C -0.192 4.192 21 C -0.137 4.137 22 C -0.220 4.220 23 C 0.331 3.669 24 O -0.341 6.341 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.047 0.953 29 H 0.120 0.880 30 H 0.052 0.948 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.462 -10.704 11.311 16.861 hybrid contribution 0.354 0.748 -0.871 1.201 sum -6.109 -9.956 10.440 15.666 Atomic orbital electron populations 1.23679 0.95939 1.00971 1.05099 1.23136 0.95312 0.99419 0.95700 1.21131 0.93652 0.92859 0.96133 1.61712 1.14591 1.51249 0.99244 1.19827 0.88791 0.86337 0.98087 1.21077 1.14313 1.07121 1.12673 0.91876 1.24986 0.97444 0.94976 0.96998 1.69977 1.31706 1.11770 1.39700 0.86575 0.80207 0.77907 0.82797 1.21312 1.20205 1.20215 1.22044 0.91844 0.96793 0.84021 1.46809 1.44041 1.09681 1.29598 1.20717 0.77787 0.88431 0.81716 1.90806 1.59248 1.13266 1.71258 1.22683 1.03756 0.92324 1.00410 1.21520 0.97007 0.96342 0.95262 1.21796 0.95638 0.99486 1.02239 1.21445 0.99141 0.97210 0.95948 1.21960 1.01974 0.95911 1.02185 1.20454 0.80680 0.81470 0.84321 1.90667 1.42845 1.50268 1.50369 0.89290 0.89051 0.87132 0.95282 0.88010 0.94765 0.98786 0.92805 0.91433 0.89374 0.86223 0.86676 0.91047 0.90833 0.91387 0.90437 0.91647 0.92843 0.90793 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.19 14.28 29.01 0.41 -2.78 16 2 C -0.12 -2.00 8.77 -36.03 -0.32 -2.31 16 3 C 0.09 1.76 5.21 -4.98 -0.03 1.73 16 4 N -0.54 -11.85 4.54 -241.43 -1.10 -12.95 16 5 C 0.19 5.14 4.56 -4.97 -0.02 5.11 16 6 C -0.51 -14.45 8.28 -34.44 -0.29 -14.74 16 7 H 0.06 1.76 7.26 -52.48 -0.38 1.38 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.26 5.05 5.17 -63.32 -0.33 4.72 16 15 N -0.56 -9.81 2.80 -118.62 -0.33 -10.14 16 16 C 0.53 9.04 7.53 -11.08 -0.08 8.96 16 17 O -0.48 -10.03 16.79 5.61 0.09 -9.94 16 18 C -0.15 -1.78 6.32 -26.94 -0.17 -1.95 16 19 C -0.10 -1.14 0.78 -154.72 -0.12 -1.26 16 20 C -0.13 -1.45 8.10 37.16 0.30 -1.15 16 21 C -0.10 -0.90 4.87 -26.73 -0.13 -1.03 16 22 C -0.16 -1.55 9.27 37.16 0.34 -1.21 16 23 C 0.54 8.61 6.62 -11.09 -0.07 8.54 16 24 O -0.47 -8.36 15.59 5.60 0.09 -8.27 16 25 H 0.09 1.21 7.84 -52.48 -0.41 0.80 16 26 H 0.09 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.03 0.54 7.71 -51.93 -0.40 0.14 16 29 H 0.10 2.18 6.59 -51.93 -0.34 1.83 16 30 H 0.03 0.99 6.94 -51.93 -0.36 0.63 16 31 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.07 1.35 7.32 -51.93 -0.38 0.97 16 34 H 0.09 1.55 6.96 -51.93 -0.36 1.19 16 35 H 0.12 1.30 7.74 -51.93 -0.40 0.90 16 36 H 0.12 1.01 7.74 -51.93 -0.40 0.60 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.79 6.33 -51.93 -0.33 0.46 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.89 6.08 -51.93 -0.32 0.57 16 44 H 0.06 0.54 6.40 -51.93 -0.33 0.21 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -32.89 357.23 -7.67 -40.56 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.93 Total: 0.56 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.59 Total: 4.21 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.69 Total: -49.25 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.89 -7.67 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.349 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds