Wall clock time and date at job start Tue Mar 31 2020 06:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00002 * 2 1 4 4 N 1.46897 * 109.47132 * 125.14322 * 3 2 1 5 5 C 1.46897 * 111.00307 * 164.15036 * 4 3 2 6 6 C 1.50707 * 109.47015 * 293.95331 * 5 4 3 7 7 H 1.08003 * 119.99709 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00072 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00024 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47336 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47301 * 299.99989 * 10 8 6 13 13 H 1.48503 * 109.47198 * 59.99933 * 10 8 6 14 14 C 1.46901 * 110.99975 * 288.10225 * 4 3 2 15 15 N 1.46497 * 109.47466 * 151.64481 * 14 4 3 16 16 C 1.33880 * 122.76179 * 100.74702 * 15 14 4 17 17 O 1.21223 * 125.39933 * 359.97438 * 16 15 14 18 18 C 1.51320 * 109.20514 * 180.02562 * 16 15 14 19 19 C 1.54225 * 103.55308 * 359.97438 * 18 16 15 20 20 C 1.53006 * 110.60373 * 118.51943 * 19 18 16 21 21 C 1.52998 * 110.60691 * 241.32846 * 19 18 16 22 22 C 1.53005 * 109.47278 * 180.02562 * 21 19 18 23 23 C 1.33879 * 122.76395 * 280.46025 * 15 14 4 24 24 O 1.21227 * 125.39208 * 359.97169 * 23 15 14 25 25 H 1.08004 * 119.99873 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99993 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99873 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47562 * 5.13865 * 3 2 1 29 29 H 1.09003 * 109.46925 * 245.14279 * 3 2 1 30 30 H 1.08998 * 109.47533 * 173.95492 * 5 4 3 31 31 H 1.09004 * 109.47253 * 53.94924 * 5 4 3 32 32 H 0.97003 * 119.99724 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.47382 * 271.64627 * 14 4 3 34 34 H 1.09003 * 109.47385 * 31.64468 * 14 4 3 35 35 H 1.08995 * 110.60796 * 118.51576 * 18 16 15 36 36 H 1.09000 * 110.60227 * 241.48398 * 18 16 15 37 37 H 1.09006 * 109.46844 * 59.99841 * 20 19 18 38 38 H 1.08997 * 109.47380 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47407 * 300.00248 * 20 19 18 40 40 H 1.09005 * 109.47168 * 300.00373 * 21 19 18 41 41 H 1.08997 * 109.47371 * 60.00528 * 21 19 18 42 42 H 1.08994 * 109.46895 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.46860 * 299.99991 * 22 21 19 44 44 H 1.08997 * 109.46955 * 59.99702 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3305 1.1325 5 6 4.0019 2.3902 0.9632 6 6 4.8791 2.0674 -0.2189 7 1 4.7087 1.1649 -0.7873 8 6 5.8991 2.9239 -0.5748 9 7 6.1063 4.0231 0.1170 10 14 6.9868 2.5234 -2.0397 11 1 8.0001 3.5953 -2.2117 12 1 7.6720 1.2265 -1.8075 13 1 6.1527 2.4301 -3.2648 14 6 2.2807 1.4838 2.4049 15 7 3.0529 0.8564 3.4801 16 6 3.8119 1.5577 4.3313 17 8 3.9514 2.7618 4.3193 18 6 4.4690 0.6090 5.3100 19 6 3.9522 -0.7767 4.8725 20 6 5.1149 -1.6745 4.4445 21 6 3.1533 -1.4339 5.9997 22 6 2.6543 -2.8050 5.5390 23 6 3.0534 -0.4649 3.6960 24 8 2.4340 -1.2821 3.0494 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3588 2.1316 0.0920 29 1 2.6193 1.4037 -0.9325 30 1 4.6143 2.4579 1.8623 31 1 3.4994 3.3425 0.7934 32 1 6.8237 4.6259 -0.1336 33 1 2.1494 2.5438 2.6226 34 1 1.3045 1.0044 2.3313 35 1 5.5543 0.6590 5.2230 36 1 4.1542 0.8310 6.3297 37 1 5.8025 -1.8019 5.2806 38 1 4.7296 -2.6475 4.1399 39 1 5.6411 -1.2138 3.6084 40 1 3.7919 -1.5553 6.8748 41 1 2.3013 -0.8043 6.2562 42 1 2.0855 -3.2733 6.3422 43 1 2.0158 -2.6839 4.6638 44 1 3.5064 -3.4344 5.2827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:32 Heat of formation + Delta-G solvation = -62.999451 kcal Electronic energy + Delta-G solvation = -25221.367923 eV Core-core repulsion = 21752.742712 eV Total energy + Delta-G solvation = -3468.625211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06551 -39.71202 -38.90462 -37.25231 -36.19441 -35.09850 -33.82378 -31.78993 -29.62943 -28.90323 -27.54228 -26.00989 -25.69098 -23.98844 -22.74809 -21.85559 -20.66974 -19.89804 -18.74122 -18.18163 -17.72892 -17.24408 -16.76440 -16.45289 -16.23931 -15.71875 -15.58559 -15.31922 -15.10102 -14.93335 -14.63444 -14.31245 -14.14263 -13.98850 -13.76724 -13.31295 -13.27523 -12.88936 -12.80764 -12.69249 -12.68575 -12.58418 -12.52680 -12.13933 -11.94277 -11.77211 -11.54993 -11.50970 -11.29025 -10.93409 -10.72306 -10.66133 -10.23322 -9.30909 -8.24748 -6.37333 0.58737 1.31987 1.37031 1.40299 1.48706 1.55612 1.87878 2.35695 3.02889 3.06854 3.20523 3.28474 3.45267 3.76938 3.90599 4.06730 4.08680 4.10579 4.17501 4.44951 4.46862 4.55854 4.64728 4.66035 4.71062 4.76699 4.77206 4.96151 4.98253 5.06436 5.11940 5.13267 5.15576 5.19132 5.38007 5.52522 5.58479 5.73441 5.77160 5.87323 5.98801 6.17737 6.40065 6.43338 6.77392 6.85876 7.32513 8.85905 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.005645 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.797590 B = 4958.962675 C = 5782.520912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.093 3.907 4 N -0.546 5.546 5 C 0.217 3.783 6 C -0.528 4.528 7 H 0.062 0.938 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.971 3.029 11 H -0.281 1.281 12 H -0.268 1.268 13 H -0.266 1.266 14 C 0.266 3.734 15 N -0.569 5.569 16 C 0.513 3.487 17 O -0.527 6.527 18 C -0.137 4.137 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.163 4.163 23 C 0.533 3.467 24 O -0.493 6.493 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.002 0.998 31 H -0.040 1.040 32 H 0.265 0.735 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 -12.940 12.869 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.160 4.160 3 C -0.034 4.034 4 N -0.272 5.272 5 C 0.091 3.909 6 C -0.566 4.566 7 H 0.081 0.919 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.795 3.205 11 H -0.206 1.206 12 H -0.193 1.193 13 H -0.191 1.191 14 C 0.055 3.945 15 N -0.312 5.312 16 C 0.305 3.695 17 O -0.401 6.401 18 C -0.176 4.176 19 C -0.089 4.089 20 C -0.190 4.190 21 C -0.132 4.132 22 C -0.220 4.220 23 C 0.323 3.677 24 O -0.365 6.365 25 H 0.121 0.879 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.020 0.980 31 H -0.023 1.023 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.483 -13.010 12.504 19.174 hybrid contribution 0.215 1.431 -1.233 1.901 sum -6.268 -11.579 11.271 17.332 Atomic orbital electron populations 1.23936 0.94820 1.02731 1.00470 1.22772 0.96034 0.97311 0.99903 1.21085 0.93232 0.94922 0.94187 1.61698 1.15269 1.49010 1.01235 1.19347 0.89214 0.86188 0.96133 1.21349 1.14871 1.07192 1.13176 0.91943 1.25935 0.98843 0.94566 1.00037 1.70124 1.32481 1.12892 1.41582 0.85421 0.78161 0.77953 0.78993 1.20631 1.19312 1.19053 1.21944 0.92748 0.96413 0.83428 1.47052 1.44160 1.10795 1.29172 1.21781 0.77110 0.88478 0.82169 1.90772 1.60925 1.15691 1.72744 1.22825 1.03925 0.90212 1.00597 1.21623 0.96527 0.96679 0.94067 1.21844 0.95621 0.98812 1.02749 1.21526 0.99536 0.96444 0.95711 1.21939 1.01915 0.96562 1.01556 1.21359 0.80730 0.80333 0.85269 1.90649 1.43884 1.50471 1.51482 0.87944 0.86623 0.88222 0.94622 0.90467 0.98036 1.02264 0.92601 0.93176 0.87692 0.84837 0.82610 0.87238 0.90786 0.94187 0.86648 0.91361 0.91043 0.93852 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.94 14.28 67.78 0.97 -3.97 16 2 C -0.14 -4.82 8.77 25.64 0.22 -4.60 16 3 C 0.09 3.80 5.21 85.56 0.45 4.24 16 4 N -0.55 -25.19 4.54 -917.74 -4.17 -29.36 16 5 C 0.22 12.25 4.56 85.56 0.39 12.64 16 6 C -0.53 -30.94 8.28 25.60 0.21 -30.73 16 7 H 0.06 3.59 7.26 -2.91 -0.02 3.57 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -58.04 13.29 21.44 0.28 -57.75 16 10 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C 0.27 10.70 5.17 170.81 0.88 11.59 16 15 N -0.57 -20.59 2.80 -767.02 -2.14 -22.74 16 16 C 0.51 18.08 7.53 87.99 0.66 18.74 16 17 O -0.53 -23.48 16.79 -2.85 -0.05 -23.53 16 18 C -0.14 -2.90 6.32 30.46 0.19 -2.71 16 19 C -0.09 -1.80 0.78 -52.32 -0.04 -1.84 16 20 C -0.13 -2.56 8.10 71.98 0.58 -1.98 16 21 C -0.09 -1.35 4.87 30.60 0.15 -1.20 16 22 C -0.16 -2.64 9.27 71.98 0.67 -1.97 16 23 C 0.53 16.81 6.62 87.99 0.58 17.39 16 24 O -0.49 -17.55 15.59 -2.87 -0.04 -17.60 16 25 H 0.10 2.54 7.84 -2.91 -0.02 2.52 16 26 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.10 3.63 8.06 -2.91 -0.02 3.60 16 28 H 0.04 1.38 7.71 -2.39 -0.02 1.36 16 29 H 0.08 3.48 6.59 -2.39 -0.02 3.46 16 30 H 0.00 0.10 6.94 -2.39 -0.02 0.08 16 31 H -0.04 -2.49 8.12 -2.38 -0.02 -2.51 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.05 2.16 7.32 -2.38 -0.02 2.15 16 34 H 0.11 3.78 6.96 -2.39 -0.02 3.76 16 35 H 0.13 2.56 7.74 -2.39 -0.02 2.54 16 36 H 0.16 2.08 7.74 -2.39 -0.02 2.06 16 37 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.07 1.43 6.33 -2.39 -0.02 1.42 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 40 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.04 0.98 6.08 -2.38 -0.01 0.97 16 44 H 0.07 0.99 6.40 -2.39 -0.02 0.98 16 Total: -1.00 -76.87 357.23 3.27 -73.60 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.98 Total: 13.73 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.38 Total: 16.35 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -6.03 Total: -109.85 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.09 Total: -41.12 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -76.87 3.27 -73.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.600 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds