Wall clock time and date at job start Tue Mar 31 2020 07:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 C 1.53003 * 109.46708 * 119.99707 * 2 1 3 5 5 N 1.46501 * 109.46785 * 175.00242 * 4 2 1 6 6 C 1.46507 * 119.99821 * 269.99683 * 5 4 2 7 7 C 1.34774 * 120.00646 * 90.00232 * 5 4 2 8 8 O 1.21590 * 119.99397 * 350.55866 * 7 5 4 9 9 N 1.34768 * 120.00859 * 170.56279 * 7 5 4 10 10 C 1.46498 * 120.00838 * 185.84435 * 9 7 5 11 11 C 1.50700 * 109.46905 * 270.00074 * 10 9 7 12 12 H 1.07998 * 120.00181 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99697 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99978 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47112 * 90.00230 * 15 13 11 17 17 H 1.48498 * 109.47320 * 210.00389 * 15 13 11 18 18 H 1.48501 * 109.46946 * 330.00256 * 15 13 11 19 19 C 1.46501 * 119.99705 * 5.84110 * 9 7 5 20 20 C 1.50702 * 109.47388 * 90.42626 * 19 9 7 21 21 C 1.34515 * 125.79133 * 97.11252 * 20 19 9 22 22 C 1.41377 * 106.84191 * 180.02562 * 21 20 19 23 23 C 1.34516 * 106.84171 * 0.02562 * 22 21 20 24 24 O 1.34302 * 125.78687 * 276.81132 * 20 19 9 25 25 H 1.09002 * 109.47334 * 300.00443 * 1 2 3 26 26 H 1.09004 * 109.46808 * 60.00118 * 1 2 3 27 27 H 1.08996 * 109.47491 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47368 * 239.99477 * 2 1 3 29 29 H 1.09002 * 109.47246 * 59.99503 * 3 2 1 30 30 H 1.08996 * 109.47385 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47051 * 299.99733 * 3 2 1 32 32 H 1.08995 * 109.47152 * 55.00084 * 4 2 1 33 33 H 1.08998 * 109.47164 * 294.99576 * 4 2 1 34 34 H 1.08992 * 109.47373 * 266.71616 * 6 5 4 35 35 H 1.09004 * 109.46933 * 26.71779 * 6 5 4 36 36 H 1.08998 * 109.46790 * 146.71366 * 6 5 4 37 37 H 1.09007 * 109.46817 * 29.99733 * 10 9 7 38 38 H 1.08994 * 109.47479 * 149.99544 * 10 9 7 39 39 H 0.97003 * 120.00015 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47580 * 210.42626 * 19 9 7 41 41 H 1.09006 * 109.47268 * 330.42795 * 19 9 7 42 42 H 1.07999 * 126.57281 * 0.04447 * 21 20 19 43 43 H 1.08006 * 126.57838 * 179.97438 * 22 21 20 44 44 H 1.07996 * 125.78887 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1907 6 6 4.1258 -1.9920 0.5614 7 6 4.2675 0.1492 1.7157 8 8 3.7597 1.1914 2.0821 9 7 5.5979 -0.0304 1.8345 10 6 6.4144 0.9741 2.5205 11 6 6.8959 1.9963 1.5233 12 1 6.6215 1.9064 0.4826 13 6 7.6867 3.0462 1.9396 14 7 8.1073 3.9380 1.0693 15 14 8.1607 3.2020 3.7397 16 1 9.4320 2.4737 3.9816 17 1 8.3389 4.6359 4.0824 18 1 7.0882 2.6204 4.5861 19 6 6.2277 -1.2302 1.2777 20 6 6.6546 -0.9606 -0.1422 21 6 7.8898 -0.6043 -0.5382 22 6 7.8425 -0.4552 -1.9433 23 6 6.5810 -0.7288 -2.3219 24 8 5.8677 -1.0409 -1.2276 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 4.3354 -2.7458 1.3202 35 1 3.4504 -2.4074 -0.1866 36 1 5.0570 -1.6899 0.0823 37 1 5.8159 1.4675 3.2863 38 1 7.2720 0.4888 2.9863 39 1 8.6634 4.6769 1.3622 40 1 7.1002 -1.4934 1.8756 41 1 5.5149 -2.0548 1.2924 42 1 8.7522 -0.4601 0.0958 43 1 8.6617 -0.1746 -2.5887 44 1 6.2069 -0.7072 -3.3348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797441804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:36 Heat of formation + Delta-G solvation = 75.954341 kcal Electronic energy + Delta-G solvation = -25766.675807 eV Core-core repulsion = 22304.076084 eV Total energy + Delta-G solvation = -3462.599723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38607 -40.01904 -36.47294 -35.63961 -33.89210 -32.53522 -32.28824 -30.58689 -28.12222 -27.36783 -26.76641 -25.89352 -24.20383 -22.21441 -21.30281 -20.26601 -19.87344 -19.13381 -17.46256 -16.82915 -16.36005 -16.05484 -15.45899 -15.30104 -14.67740 -14.34239 -14.24760 -13.86109 -13.61008 -13.37903 -13.02206 -12.75319 -12.36486 -12.34909 -12.19755 -12.15452 -11.94920 -11.81942 -11.60893 -11.58855 -10.99007 -10.84645 -10.53154 -10.52426 -10.40651 -10.09129 -9.93292 -9.50984 -9.31340 -9.06952 -8.51020 -8.28865 -7.99039 -7.58685 -5.98591 -3.95254 2.14603 3.05547 3.27357 3.29008 3.32475 3.40950 3.43121 3.95677 4.41141 4.46515 4.94161 5.03566 5.10887 5.19044 5.27217 5.32973 5.37992 5.45570 5.53869 5.55942 5.68978 5.78476 5.86319 5.87076 5.97462 6.05589 6.16080 6.20520 6.33340 6.40520 6.48087 6.50705 6.61426 6.66646 6.85911 6.99356 7.01260 7.03442 7.32345 7.52667 7.64225 7.72204 8.56366 8.58605 9.09225 9.31477 9.62157 11.14992 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.006935 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.465035 B = 4036.791808 C = 5169.825572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.143 3.857 5 N -0.637 5.637 6 C 0.040 3.960 7 C 0.707 3.293 8 O -0.568 6.568 9 N -0.603 5.603 10 C 0.231 3.769 11 C -0.514 4.514 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.870 3.130 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.135 3.865 20 C -0.035 4.035 21 C -0.163 4.163 22 C -0.207 4.207 23 C -0.055 4.055 24 O -0.176 6.176 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -15.440 -3.464 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.020 3.980 5 N -0.376 5.376 6 C -0.101 4.101 7 C 0.410 3.590 8 O -0.444 6.444 9 N -0.337 5.337 10 C 0.111 3.889 11 C -0.553 4.553 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.697 3.303 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.189 1.189 19 C 0.011 3.989 20 C -0.086 4.086 21 C -0.183 4.183 22 C -0.227 4.227 23 C -0.122 4.122 24 O -0.074 6.074 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.059 -14.734 -3.199 17.096 hybrid contribution 0.797 0.511 0.481 1.062 sum -7.261 -14.223 -2.718 16.199 Atomic orbital electron populations 1.21774 0.95344 1.01053 1.01875 1.21537 0.95037 0.98095 0.98484 1.21794 1.02788 0.94241 1.00427 1.21317 0.78561 0.99604 0.98568 1.46943 1.05869 1.21946 1.62814 1.23225 1.01750 0.88315 0.96837 1.15862 0.81381 0.82954 0.78791 1.90903 1.72375 1.25473 1.55613 1.47223 1.05064 1.22723 1.58695 1.19618 0.89360 0.86729 0.93226 1.21328 1.30145 1.07616 0.96181 0.90631 1.24834 0.95816 0.95430 0.96964 1.69907 1.36035 1.13921 1.33908 0.86950 0.79114 0.77737 0.86520 1.20306 1.21131 1.18917 1.21831 1.01207 0.91059 0.84758 1.22705 0.89771 1.07347 0.88763 1.21519 0.98294 1.03634 0.94847 1.21777 0.97851 1.07145 0.95886 1.23919 0.91565 1.05872 0.90865 1.84054 1.39578 1.69108 1.14619 0.92608 0.92774 0.93132 0.91724 0.92394 0.91438 0.94470 0.91466 0.90271 0.92911 0.92158 0.86197 0.94127 0.95840 0.92841 0.88762 0.84665 0.83632 0.84068 0.78969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.11 -1.56 3.13 -90.62 -0.28 -1.84 16 3 C -0.14 -2.40 7.82 37.16 0.29 -2.11 16 4 C 0.14 2.02 4.97 -4.04 -0.02 2.00 16 5 N -0.64 -10.41 2.76 -236.36 -0.65 -11.06 16 6 C 0.04 0.52 8.38 59.85 0.50 1.02 16 7 C 0.71 14.98 7.05 -86.93 -0.61 14.37 16 8 O -0.57 -14.19 13.10 5.29 0.07 -14.12 16 9 N -0.60 -12.62 2.44 -191.62 -0.47 -13.09 16 10 C 0.23 5.66 4.23 -5.19 -0.02 5.64 16 11 C -0.51 -14.78 9.94 -34.44 -0.34 -15.12 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 15 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 19 C 0.13 2.18 5.48 -5.19 -0.03 2.15 16 20 C -0.04 -0.62 6.27 -35.62 -0.22 -0.84 16 21 C -0.16 -2.97 10.81 -39.70 -0.43 -3.40 16 22 C -0.21 -3.44 10.91 -39.70 -0.43 -3.87 16 23 C -0.06 -0.84 12.09 29.42 0.36 -0.48 16 24 O -0.18 -2.94 8.49 5.70 0.05 -2.89 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 30 H 0.07 1.49 5.85 -51.93 -0.30 1.18 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 33 H 0.08 1.23 7.57 -51.93 -0.39 0.84 16 34 H 0.05 0.55 6.93 -51.93 -0.36 0.19 16 35 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.12 1.74 0.89 -70.30 -0.06 1.68 16 37 H 0.04 1.08 6.56 -51.93 -0.34 0.74 16 38 H 0.02 0.53 7.33 -51.93 -0.38 0.15 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 41 H 0.14 1.76 2.82 -106.83 -0.30 1.46 16 42 H 0.15 2.65 8.06 -52.49 -0.42 2.23 16 43 H 0.14 2.06 8.06 -52.48 -0.42 1.63 16 44 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -35.11 345.81 -7.46 -42.57 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.77 Total: 5.38 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.00 Total: -1.72 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.35 Total: -51.42 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.12 Total: -17.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.11 -7.46 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797441804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.520 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds