Wall clock time and date at job start Tue Mar 31 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 C 1.53003 * 109.46708 * 119.99707 * 2 1 3 5 5 N 1.46501 * 109.46785 * 175.00242 * 4 2 1 6 6 C 1.46507 * 119.99821 * 269.99683 * 5 4 2 7 7 C 1.34774 * 120.00646 * 90.00232 * 5 4 2 8 8 O 1.21590 * 119.99397 * 350.55866 * 7 5 4 9 9 N 1.34768 * 120.00859 * 170.56279 * 7 5 4 10 10 C 1.46498 * 120.00838 * 185.84435 * 9 7 5 11 11 C 1.50700 * 109.46905 * 270.00074 * 10 9 7 12 12 H 1.07998 * 120.00181 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99697 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99978 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47112 * 90.00230 * 15 13 11 17 17 H 1.48498 * 109.47320 * 210.00389 * 15 13 11 18 18 H 1.48501 * 109.46946 * 330.00256 * 15 13 11 19 19 C 1.46501 * 119.99705 * 5.84110 * 9 7 5 20 20 C 1.50702 * 109.47388 * 90.42626 * 19 9 7 21 21 C 1.34515 * 125.79133 * 97.11252 * 20 19 9 22 22 C 1.41377 * 106.84191 * 180.02562 * 21 20 19 23 23 C 1.34516 * 106.84171 * 0.02562 * 22 21 20 24 24 O 1.34302 * 125.78687 * 276.81132 * 20 19 9 25 25 H 1.09002 * 109.47334 * 300.00443 * 1 2 3 26 26 H 1.09004 * 109.46808 * 60.00118 * 1 2 3 27 27 H 1.08996 * 109.47491 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47368 * 239.99477 * 2 1 3 29 29 H 1.09002 * 109.47246 * 59.99503 * 3 2 1 30 30 H 1.08996 * 109.47385 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47051 * 299.99733 * 3 2 1 32 32 H 1.08995 * 109.47152 * 55.00084 * 4 2 1 33 33 H 1.08998 * 109.47164 * 294.99576 * 4 2 1 34 34 H 1.08992 * 109.47373 * 266.71616 * 6 5 4 35 35 H 1.09004 * 109.46933 * 26.71779 * 6 5 4 36 36 H 1.08998 * 109.46790 * 146.71366 * 6 5 4 37 37 H 1.09007 * 109.46817 * 29.99733 * 10 9 7 38 38 H 1.08994 * 109.47479 * 149.99544 * 10 9 7 39 39 H 0.97003 * 120.00015 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47580 * 210.42626 * 19 9 7 41 41 H 1.09006 * 109.47268 * 330.42795 * 19 9 7 42 42 H 1.07999 * 126.57281 * 0.04447 * 21 20 19 43 43 H 1.08006 * 126.57838 * 179.97438 * 22 21 20 44 44 H 1.07996 * 125.78887 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1907 6 6 4.1258 -1.9920 0.5614 7 6 4.2675 0.1492 1.7157 8 8 3.7597 1.1914 2.0821 9 7 5.5979 -0.0304 1.8345 10 6 6.4144 0.9741 2.5205 11 6 6.8959 1.9963 1.5233 12 1 6.6215 1.9064 0.4826 13 6 7.6867 3.0462 1.9396 14 7 8.1073 3.9380 1.0693 15 14 8.1607 3.2020 3.7397 16 1 9.4320 2.4737 3.9816 17 1 8.3389 4.6359 4.0824 18 1 7.0882 2.6204 4.5861 19 6 6.2277 -1.2302 1.2777 20 6 6.6546 -0.9606 -0.1422 21 6 7.8898 -0.6043 -0.5382 22 6 7.8425 -0.4552 -1.9433 23 6 6.5810 -0.7288 -2.3219 24 8 5.8677 -1.0409 -1.2276 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 4.3354 -2.7458 1.3202 35 1 3.4504 -2.4074 -0.1866 36 1 5.0570 -1.6899 0.0823 37 1 5.8159 1.4675 3.2863 38 1 7.2720 0.4888 2.9863 39 1 8.6634 4.6769 1.3622 40 1 7.1002 -1.4934 1.8756 41 1 5.5149 -2.0548 1.2924 42 1 8.7522 -0.4601 0.0958 43 1 8.6617 -0.1746 -2.5887 44 1 6.2069 -0.7072 -3.3348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797441804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:35 Heat of formation + Delta-G solvation = 52.636832 kcal Electronic energy + Delta-G solvation = -25767.686930 eV Core-core repulsion = 22304.076084 eV Total energy + Delta-G solvation = -3463.610846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.68486 -41.47227 -37.80888 -37.18993 -35.42890 -34.31882 -33.79109 -32.10613 -29.90947 -28.63066 -28.01437 -27.16101 -25.67164 -23.96754 -22.69759 -21.61002 -21.14780 -20.53126 -19.16407 -18.57290 -17.82177 -17.56549 -16.90749 -16.66658 -16.23789 -15.78476 -15.54615 -15.23719 -15.18698 -14.73864 -14.43340 -14.21245 -14.07254 -13.69909 -13.58734 -13.49918 -13.41104 -13.16147 -13.03066 -12.89919 -12.72540 -12.43830 -12.14565 -11.97526 -11.75440 -11.69870 -11.55965 -11.34121 -10.76920 -10.71143 -10.52757 -9.81866 -9.30598 -9.09844 -8.25976 -6.28059 0.82517 1.31805 1.36875 1.47159 1.69819 1.96826 1.99750 2.34722 2.43157 3.02910 3.09179 3.73859 3.91765 4.02897 4.04994 4.12664 4.19477 4.37848 4.41076 4.51848 4.56913 4.64456 4.70085 4.75685 4.80974 4.85853 4.92239 4.92897 5.02070 5.05682 5.12553 5.14754 5.24312 5.37847 5.45024 5.49326 5.52418 5.57972 5.68909 5.79312 6.02262 6.29780 6.36551 6.73164 7.06555 7.31381 7.74971 8.91340 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.006935 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.465035 B = 4036.791808 C = 5169.825572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.127 4.127 4 C 0.139 3.861 5 N -0.629 5.629 6 C 0.028 3.972 7 C 0.698 3.302 8 O -0.620 6.620 9 N -0.610 5.610 10 C 0.241 3.759 11 C -0.509 4.509 12 H 0.022 0.978 13 C 0.008 3.992 14 N -0.950 5.950 15 Si 0.943 3.057 16 H -0.252 1.252 17 H -0.287 1.287 18 H -0.254 1.254 19 C 0.127 3.873 20 C -0.042 4.042 21 C -0.193 4.193 22 C -0.233 4.233 23 C -0.047 4.047 24 O -0.177 6.177 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.017 0.983 31 H 0.044 0.956 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.020 0.980 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.111 0.889 41 H 0.177 0.823 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 -18.597 -3.032 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 C -0.185 4.185 4 C 0.016 3.984 5 N -0.366 5.366 6 C -0.112 4.112 7 C 0.401 3.599 8 O -0.500 6.500 9 N -0.344 5.344 10 C 0.118 3.882 11 C -0.548 4.548 12 H 0.041 0.959 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.767 3.233 16 H -0.176 1.176 17 H -0.213 1.213 18 H -0.178 1.178 19 C 0.006 3.994 20 C -0.092 4.092 21 C -0.213 4.213 22 C -0.252 4.252 23 C -0.114 4.114 24 O -0.074 6.074 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.193 0.807 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.361 -17.976 -2.796 20.460 hybrid contribution 1.147 1.497 0.176 1.894 sum -8.214 -16.479 -2.620 18.598 Atomic orbital electron populations 1.21712 0.92585 1.03041 1.01947 1.21505 0.97225 0.94933 0.98806 1.21688 0.99415 0.97622 0.99776 1.21560 0.77284 1.01886 0.97658 1.46966 1.06479 1.21622 1.61550 1.23416 1.01761 0.87542 0.98459 1.16186 0.81648 0.83312 0.78796 1.90858 1.73399 1.27910 1.57861 1.47147 1.05103 1.23298 1.58848 1.19282 0.90080 0.86943 0.91881 1.21432 1.29684 1.09045 0.94642 0.95938 1.25804 0.95858 0.94908 1.02344 1.70082 1.37432 1.14953 1.36602 0.85779 0.79866 0.77807 0.79884 1.17635 1.21327 1.17814 1.22362 1.02931 0.90155 0.83911 1.22864 0.89475 1.07282 0.89600 1.21707 0.98778 1.04867 0.95972 1.22071 0.99309 1.08302 0.95546 1.24707 0.90999 1.03682 0.92027 1.84082 1.39537 1.68994 1.14803 0.93024 0.92337 0.90118 0.90900 0.94419 0.96344 0.93671 0.86700 0.92369 0.89091 0.89095 0.87761 0.96210 0.93193 0.92760 0.87116 0.80656 0.84684 0.82810 0.74951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 2 C -0.10 -2.72 3.13 -10.79 -0.03 -2.76 16 3 C -0.13 -4.67 7.82 71.98 0.56 -4.10 16 4 C 0.14 3.57 4.97 86.38 0.43 4.00 16 5 N -0.63 -19.36 2.76 ******* -2.82 -22.18 16 6 C 0.03 0.61 8.38 127.77 1.07 1.68 16 7 C 0.70 29.82 7.05 179.06 1.26 31.08 16 8 O -0.62 -32.43 13.10 -4.00 -0.05 -32.48 16 9 N -0.61 -25.58 2.44 -878.42 -2.14 -27.73 16 10 C 0.24 11.94 4.23 85.63 0.36 12.30 16 11 C -0.51 -30.52 9.94 25.60 0.25 -30.26 16 12 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 13 C 0.01 0.46 5.47 84.65 0.46 0.92 16 14 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 15 Si 0.94 45.41 27.47 68.60 1.88 47.30 16 16 H -0.25 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 18 H -0.25 -11.73 6.54 99.48 0.65 -11.08 16 19 C 0.13 3.95 5.48 85.63 0.47 4.42 16 20 C -0.04 -1.45 6.27 24.83 0.16 -1.29 16 21 C -0.19 -7.24 10.81 22.19 0.24 -7.00 16 22 C -0.23 -7.82 10.91 22.19 0.24 -7.58 16 23 C -0.05 -1.40 12.09 66.97 0.81 -0.59 16 24 O -0.18 -5.72 8.49 -2.53 -0.02 -5.74 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.48 7.88 -2.39 -0.02 1.46 16 30 H 0.02 0.82 5.85 -2.39 -0.01 0.81 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.12 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.06 1.77 7.57 -2.39 -0.02 1.75 16 34 H 0.09 1.39 6.93 -2.39 -0.02 1.37 16 35 H 0.09 1.51 8.05 -2.38 -0.02 1.49 16 36 H 0.11 2.75 0.89 -62.33 -0.06 2.69 16 37 H 0.02 1.07 6.56 -2.38 -0.02 1.05 16 38 H 0.05 2.21 7.33 -2.39 -0.02 2.19 16 39 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.11 3.00 7.90 -2.39 -0.02 2.98 16 41 H 0.18 3.98 2.82 -53.96 -0.15 3.83 16 42 H 0.14 5.18 8.06 -2.91 -0.02 5.16 16 43 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.23 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -83.83 345.81 4.84 -78.99 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.74 Total: 24.37 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.95 Total: -1.07 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.66 Total: -111.36 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.07 Total: -38.22 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -83.83 4.84 -78.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797441804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.629 kcal (2) G-P(sol) polarization free energy of solvation -83.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds