Wall clock time and date at job start Tue Mar 31 2020 07:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47083 * 318.79734 * 3 2 1 5 5 C 1.36939 * 120.00246 * 268.69112 * 4 3 2 6 6 H 1.07991 * 119.99979 * 321.91557 * 5 4 3 7 7 C 1.38820 * 119.99574 * 141.91438 * 5 4 3 8 8 N 1.31617 * 119.99567 * 157.19846 * 7 5 4 9 9 Si 1.86796 * 120.00184 * 337.19181 * 7 5 4 10 10 H 1.48506 * 109.46986 * 95.69853 * 9 7 5 11 11 H 1.48501 * 109.47444 * 215.69698 * 9 7 5 12 12 H 1.48498 * 109.47142 * 335.70060 * 9 7 5 13 13 C 1.46510 * 119.99633 * 88.69200 * 4 3 2 14 14 C 1.52999 * 109.46783 * 90.00081 * 13 4 3 15 15 C 1.53943 * 113.74377 * 86.25889 * 14 13 4 16 16 N 1.47926 * 85.99969 * 138.00070 * 15 14 13 17 17 C 1.34778 * 134.50196 * 155.35767 * 16 15 14 18 18 O 1.21519 * 119.99730 * 180.02562 * 17 16 15 19 19 O 1.34629 * 120.00103 * 0.02562 * 17 16 15 20 20 C 1.45199 * 116.99906 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47348 * 59.99954 * 20 19 17 22 22 C 1.53008 * 109.46953 * 179.97438 * 20 19 17 23 23 C 1.53005 * 109.47211 * 299.99812 * 20 19 17 24 24 C 1.47584 * 91.00721 * 335.35794 * 16 15 14 25 25 H 4.40638 * 5.51326 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46964 * 198.80277 * 3 2 1 27 27 H 1.08996 * 109.47638 * 78.79919 * 3 2 1 28 28 H 0.96996 * 119.99578 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.46868 * 329.99965 * 13 4 3 30 30 H 1.08997 * 109.46979 * 209.99404 * 13 4 3 31 31 H 1.09000 * 112.94888 * 314.66290 * 14 13 4 32 32 H 1.09000 * 113.77470 * 252.35950 * 15 14 13 33 33 H 1.09001 * 113.77130 * 23.75571 * 15 14 13 34 34 H 1.08998 * 109.46895 * 59.99919 * 21 20 19 35 35 H 1.09005 * 109.46801 * 179.97438 * 21 20 19 36 36 H 1.08991 * 109.46958 * 300.00136 * 21 20 19 37 37 H 1.09001 * 109.47156 * 60.00011 * 22 20 19 38 38 H 1.09003 * 109.46963 * 179.97438 * 22 20 19 39 39 H 1.08998 * 109.47262 * 300.00064 * 22 20 19 40 40 H 1.09001 * 109.46954 * 59.99996 * 23 20 19 41 41 H 1.08993 * 109.46968 * 180.02562 * 23 20 19 42 42 H 1.09001 * 109.47176 * 300.00159 * 23 20 19 43 43 H 1.08998 * 113.77041 * 270.34268 * 24 16 15 44 44 H 1.08997 * 113.77062 * 138.93345 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0383 0.9098 5 6 3.3884 -0.7362 2.2212 6 1 3.8272 0.2158 2.4808 7 6 3.0814 -1.6537 3.2167 8 7 3.6983 -1.5957 4.3779 9 14 1.7927 -2.9703 2.9083 10 1 2.4598 -4.2233 2.4722 11 1 1.0340 -3.2231 4.1596 12 1 0.8599 -2.5112 1.8480 13 6 3.3522 -2.4007 0.4167 14 6 4.7874 -2.5342 -0.0964 15 6 5.8061 -2.8972 0.9993 16 7 6.3901 -3.8233 0.0045 17 6 7.6095 -4.3677 -0.1775 18 8 7.8061 -5.1187 -1.1125 19 8 8.6097 -4.0796 0.6763 20 6 9.8962 -4.7014 0.4185 21 6 10.3999 -4.2777 -0.9626 22 6 10.8998 -4.2581 1.4850 23 6 9.7448 -6.2234 0.4613 24 6 5.1011 -3.9115 -0.7087 25 1 -1.0498 0.0000 0.0003 26 1 3.0089 0.9737 0.3313 27 1 3.0095 -0.1988 -1.0080 28 1 3.4835 -2.2365 5.0736 29 1 2.6553 -2.6087 -0.3951 30 1 3.1886 -3.1109 1.2272 31 1 5.0951 -1.6959 -0.7213 32 1 6.4653 -2.0745 1.2763 33 1 5.3649 -3.3989 1.8606 34 1 10.5078 -3.1935 -0.9931 35 1 11.3660 -4.7442 -1.1559 36 1 9.6851 -4.5931 -1.7225 37 1 10.5412 -4.5596 2.4692 38 1 11.8655 -4.7252 1.2917 39 1 11.0076 -3.1739 1.4541 40 1 9.0299 -6.5388 -0.2987 41 1 10.7106 -6.6901 0.2682 42 1 9.3859 -6.5253 1.4453 43 1 4.4532 -4.7104 -0.3480 44 1 5.1977 -3.8979 -1.7943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800383746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:35 Heat of formation + Delta-G solvation = 37.735886 kcal Electronic energy + Delta-G solvation = -24323.812837 eV Core-core repulsion = 20859.555838 eV Total energy + Delta-G solvation = -3464.256999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57707 -39.05608 -36.57643 -35.82825 -33.91829 -32.57638 -31.52171 -29.84883 -27.42263 -27.39148 -26.80149 -25.82568 -25.74415 -22.30733 -21.37656 -20.09239 -18.96790 -17.49386 -17.45477 -16.98656 -16.53406 -15.98510 -15.40991 -14.97581 -14.77606 -14.54650 -14.10389 -13.85010 -13.62909 -13.18012 -12.99484 -12.58510 -12.44853 -12.40589 -12.19498 -12.16203 -11.88482 -11.85913 -11.59897 -11.53186 -11.38552 -11.25839 -11.01268 -10.61074 -10.43853 -10.26905 -9.86662 -9.80457 -9.75349 -9.59980 -9.38962 -8.63244 -8.45901 -7.08136 -6.11727 -3.55957 2.25123 3.11080 3.20641 3.40935 3.46551 3.50125 3.56636 4.00042 4.41777 4.68948 4.72187 4.76093 4.89830 5.06367 5.13453 5.30296 5.38354 5.42540 5.46547 5.48876 5.49452 5.63615 5.65723 5.72556 5.83474 5.83619 5.95804 6.01354 6.06571 6.13992 6.21217 6.26510 6.28542 6.31982 6.36276 6.47579 6.68243 6.69603 6.77552 7.90399 7.99088 8.23875 8.37279 8.58221 8.82519 9.56360 9.93788 11.02620 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.004068 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.928139 B = 6881.251013 C = 7389.795933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.167 4.167 3 C 0.238 3.762 4 N -0.593 5.593 5 C -0.272 4.272 6 H 0.084 0.916 7 C 0.045 3.955 8 N -0.891 5.891 9 Si 0.864 3.136 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.263 1.263 13 C 0.146 3.854 14 C -0.129 4.129 15 C 0.131 3.869 16 N -0.635 5.635 17 C 0.670 3.330 18 O -0.584 6.584 19 O -0.359 6.359 20 C 0.134 3.866 21 C -0.182 4.182 22 C -0.140 4.140 23 C -0.182 4.182 24 C 0.132 3.868 25 H 0.202 0.798 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.265 0.735 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -4.446 -8.990 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.170 4.170 3 C 0.113 3.887 4 N -0.313 5.313 5 C -0.400 4.400 6 H 0.101 0.899 7 C -0.157 4.157 8 N -0.530 5.530 9 Si 0.694 3.306 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.187 1.187 13 C 0.020 3.980 14 C -0.150 4.150 15 C 0.010 3.990 16 N -0.376 5.376 17 C 0.427 3.573 18 O -0.475 6.475 19 O -0.273 6.273 20 C 0.097 3.903 21 C -0.239 4.239 22 C -0.198 4.198 23 C -0.240 4.240 24 C 0.010 3.990 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.824 -4.820 -9.070 13.542 hybrid contribution -1.030 -0.993 0.182 1.442 sum 7.794 -5.813 -8.889 13.173 Atomic orbital electron populations 1.24701 0.95843 1.03440 1.03903 1.25203 0.96289 0.97997 0.97528 1.18272 0.81617 0.94549 0.94306 1.44197 1.73584 1.05461 1.08023 1.18780 1.36159 1.05080 0.79984 0.89854 1.25463 0.97066 0.98268 0.94927 1.69853 1.40195 1.37274 1.05715 0.87145 0.84387 0.81702 0.77394 1.21298 1.22786 1.18741 1.21157 0.91673 0.87918 0.97283 1.23767 0.98660 0.95550 0.97063 1.23312 0.92555 0.90616 0.92533 1.49140 1.06243 1.49025 1.33240 1.17613 0.80667 0.78290 0.80746 1.90839 1.82721 1.40032 1.33920 1.86363 1.19824 1.68674 1.52456 1.22016 0.79428 0.92707 0.96140 1.22506 1.02415 1.01771 0.97202 1.21847 0.97059 1.02600 0.98244 1.22506 1.03546 0.94246 1.03655 1.23309 0.79718 0.98058 0.97919 0.78095 0.90182 0.91513 0.92540 0.93213 0.92247 0.88153 0.89607 0.89161 0.92222 0.91461 0.89437 0.91416 0.90410 0.91412 0.89461 0.91426 0.92233 0.89891 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.66 19.25 29.55 0.57 -4.10 16 2 C -0.17 -3.22 13.68 -37.12 -0.51 -3.73 16 3 C 0.24 4.31 6.14 -6.83 -0.04 4.26 16 4 N -0.59 -12.47 2.02 -176.57 -0.36 -12.83 16 5 C -0.27 -6.84 9.90 -15.06 -0.15 -6.99 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.04 1.18 5.29 -17.43 -0.09 1.09 16 8 N -0.89 -25.25 13.97 55.49 0.78 -24.48 16 9 Si 0.86 20.93 25.09 -169.99 -4.27 16.66 16 10 H -0.28 -6.60 6.68 56.52 0.38 -6.22 16 11 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.15 2.74 4.36 -4.04 -0.02 2.73 16 14 C -0.13 -2.09 4.14 -89.69 -0.37 -2.46 16 15 C 0.13 2.36 8.45 -2.78 -0.02 2.33 16 16 N -0.63 -10.97 3.62 -183.86 -0.66 -11.63 16 17 C 0.67 12.05 8.22 54.06 0.44 12.49 16 18 O -0.58 -11.02 12.61 -19.29 -0.24 -11.26 16 19 O -0.36 -6.03 9.88 -40.29 -0.40 -6.43 16 20 C 0.13 1.78 1.13 -90.61 -0.10 1.68 16 21 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 22 C -0.14 -1.47 8.85 37.16 0.33 -1.14 16 23 C -0.18 -2.30 8.37 37.16 0.31 -1.99 16 24 C 0.13 1.97 8.40 -2.96 -0.02 1.95 16 25 H 0.20 2.86 7.80 -54.10 -0.42 2.44 16 26 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 27 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 29 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.06 1.26 3.12 -51.93 -0.16 1.09 16 31 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.09 1.79 7.92 -51.93 -0.41 1.38 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.28 5.88 -51.93 -0.31 0.98 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -30.35 363.32 -6.14 -36.48 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.09 Total: 3.80 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.63 Total: 4.21 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.25 Total: -48.94 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.64 Total: -17.69 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.27 Total: 16.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.35 -6.14 -36.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800383746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.217 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds