Wall clock time and date at job start Tue Mar 31 2020 07:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47083 * 318.79734 * 3 2 1 5 5 C 1.36939 * 120.00246 * 268.69112 * 4 3 2 6 6 H 1.07991 * 119.99979 * 321.91557 * 5 4 3 7 7 C 1.38820 * 119.99574 * 141.91438 * 5 4 3 8 8 N 1.31617 * 119.99567 * 157.19846 * 7 5 4 9 9 Si 1.86796 * 120.00184 * 337.19181 * 7 5 4 10 10 H 1.48506 * 109.46986 * 95.69853 * 9 7 5 11 11 H 1.48501 * 109.47444 * 215.69698 * 9 7 5 12 12 H 1.48498 * 109.47142 * 335.70060 * 9 7 5 13 13 C 1.46510 * 119.99633 * 88.69200 * 4 3 2 14 14 C 1.52999 * 109.46783 * 90.00081 * 13 4 3 15 15 C 1.53943 * 113.74377 * 86.25889 * 14 13 4 16 16 N 1.47926 * 85.99969 * 138.00070 * 15 14 13 17 17 C 1.34778 * 134.50196 * 155.35767 * 16 15 14 18 18 O 1.21519 * 119.99730 * 180.02562 * 17 16 15 19 19 O 1.34629 * 120.00103 * 0.02562 * 17 16 15 20 20 C 1.45199 * 116.99906 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47348 * 59.99954 * 20 19 17 22 22 C 1.53008 * 109.46953 * 179.97438 * 20 19 17 23 23 C 1.53005 * 109.47211 * 299.99812 * 20 19 17 24 24 C 1.47584 * 91.00721 * 335.35794 * 16 15 14 25 25 H 4.40638 * 5.51326 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46964 * 198.80277 * 3 2 1 27 27 H 1.08996 * 109.47638 * 78.79919 * 3 2 1 28 28 H 0.96996 * 119.99578 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.46868 * 329.99965 * 13 4 3 30 30 H 1.08997 * 109.46979 * 209.99404 * 13 4 3 31 31 H 1.09000 * 112.94888 * 314.66290 * 14 13 4 32 32 H 1.09000 * 113.77470 * 252.35950 * 15 14 13 33 33 H 1.09001 * 113.77130 * 23.75571 * 15 14 13 34 34 H 1.08998 * 109.46895 * 59.99919 * 21 20 19 35 35 H 1.09005 * 109.46801 * 179.97438 * 21 20 19 36 36 H 1.08991 * 109.46958 * 300.00136 * 21 20 19 37 37 H 1.09001 * 109.47156 * 60.00011 * 22 20 19 38 38 H 1.09003 * 109.46963 * 179.97438 * 22 20 19 39 39 H 1.08998 * 109.47262 * 300.00064 * 22 20 19 40 40 H 1.09001 * 109.46954 * 59.99996 * 23 20 19 41 41 H 1.08993 * 109.46968 * 180.02562 * 23 20 19 42 42 H 1.09001 * 109.47176 * 300.00159 * 23 20 19 43 43 H 1.08998 * 113.77041 * 270.34268 * 24 16 15 44 44 H 1.08997 * 113.77062 * 138.93345 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0383 0.9098 5 6 3.3884 -0.7362 2.2212 6 1 3.8272 0.2158 2.4808 7 6 3.0814 -1.6537 3.2167 8 7 3.6983 -1.5957 4.3779 9 14 1.7927 -2.9703 2.9083 10 1 2.4598 -4.2233 2.4722 11 1 1.0340 -3.2231 4.1596 12 1 0.8599 -2.5112 1.8480 13 6 3.3522 -2.4007 0.4167 14 6 4.7874 -2.5342 -0.0964 15 6 5.8061 -2.8972 0.9993 16 7 6.3901 -3.8233 0.0045 17 6 7.6095 -4.3677 -0.1775 18 8 7.8061 -5.1187 -1.1125 19 8 8.6097 -4.0796 0.6763 20 6 9.8962 -4.7014 0.4185 21 6 10.3999 -4.2777 -0.9626 22 6 10.8998 -4.2581 1.4850 23 6 9.7448 -6.2234 0.4613 24 6 5.1011 -3.9115 -0.7087 25 1 -1.0498 0.0000 0.0003 26 1 3.0089 0.9737 0.3313 27 1 3.0095 -0.1988 -1.0080 28 1 3.4835 -2.2365 5.0736 29 1 2.6553 -2.6087 -0.3951 30 1 3.1886 -3.1109 1.2272 31 1 5.0951 -1.6959 -0.7213 32 1 6.4653 -2.0745 1.2763 33 1 5.3649 -3.3989 1.8606 34 1 10.5078 -3.1935 -0.9931 35 1 11.3660 -4.7442 -1.1559 36 1 9.6851 -4.5931 -1.7225 37 1 10.5412 -4.5596 2.4692 38 1 11.8655 -4.7252 1.2917 39 1 11.0076 -3.1739 1.4541 40 1 9.0299 -6.5388 -0.2987 41 1 10.7106 -6.6901 0.2682 42 1 9.3859 -6.5253 1.4453 43 1 4.4532 -4.7104 -0.3480 44 1 5.1977 -3.8979 -1.7943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800383746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:34 Heat of formation + Delta-G solvation = 20.203116 kcal Electronic energy + Delta-G solvation = -24324.573115 eV Core-core repulsion = 20859.555838 eV Total energy + Delta-G solvation = -3465.017277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87037 -40.37275 -37.99401 -37.30541 -35.04071 -34.26219 -33.22583 -31.28906 -28.37235 -28.31258 -28.30822 -27.43211 -27.15080 -23.84070 -22.83389 -21.40252 -20.23176 -19.04840 -18.85857 -18.54729 -17.74419 -17.32716 -17.13070 -16.29001 -16.20409 -15.89511 -15.29766 -15.24761 -14.95814 -14.76487 -14.38545 -14.08883 -13.93738 -13.58554 -13.34876 -13.25417 -13.15209 -12.98810 -12.91801 -12.87634 -12.76403 -12.49630 -12.45195 -12.12125 -12.03561 -11.64894 -11.40182 -11.38369 -11.22341 -11.02854 -10.79761 -10.56122 -9.83148 -8.85563 -8.16441 -5.55523 1.02684 1.28587 1.44077 1.53703 1.74278 2.02633 2.14562 2.43184 2.74762 3.08643 3.37514 3.69965 3.74969 3.79445 3.85822 3.94101 4.06943 4.11418 4.26699 4.45638 4.54251 4.60334 4.60912 4.64471 4.70040 4.74706 4.78474 4.80218 4.81477 4.85722 4.90271 4.95685 5.05630 5.09660 5.26839 5.32219 5.33176 5.39197 5.49060 5.97140 6.23825 6.62426 6.92790 7.02255 7.24262 7.63488 8.04564 9.02171 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.004068 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.928139 B = 6881.251013 C = 7389.795933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.207 4.207 3 C 0.237 3.763 4 N -0.603 5.603 5 C -0.247 4.247 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.917 3.083 10 H -0.272 1.272 11 H -0.317 1.317 12 H -0.260 1.260 13 C 0.144 3.856 14 C -0.113 4.113 15 C 0.130 3.870 16 N -0.639 5.639 17 C 0.665 3.335 18 O -0.595 6.595 19 O -0.375 6.375 20 C 0.118 3.882 21 C -0.175 4.175 22 C -0.136 4.136 23 C -0.177 4.177 24 C 0.137 3.863 25 H 0.233 0.767 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.260 0.740 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 -5.060 -11.135 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.210 4.210 3 C 0.112 3.888 4 N -0.324 5.324 5 C -0.377 4.377 6 H 0.069 0.931 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.747 3.253 10 H -0.199 1.199 11 H -0.247 1.247 12 H -0.184 1.184 13 C 0.019 3.981 14 C -0.134 4.134 15 C 0.008 3.992 16 N -0.381 5.381 17 C 0.422 3.578 18 O -0.488 6.488 19 O -0.290 6.290 20 C 0.082 3.918 21 C -0.233 4.233 22 C -0.193 4.193 23 C -0.234 4.234 24 C 0.016 3.984 25 H 0.250 0.750 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.931 -5.440 -11.269 15.374 hybrid contribution -1.020 -0.721 0.787 1.476 sum 7.911 -6.161 -10.482 14.505 Atomic orbital electron populations 1.25550 0.96898 1.01775 1.02422 1.25470 0.97077 0.99484 0.98941 1.18392 0.81555 0.93512 0.95311 1.44257 1.74249 1.06953 1.06893 1.18620 1.33840 1.03266 0.81997 0.93061 1.25881 0.98745 1.00487 0.94852 1.69966 1.42288 1.38937 1.06929 0.86279 0.82205 0.80569 0.76237 1.19867 1.24673 1.18414 1.21199 0.93666 0.86021 0.97249 1.23601 0.96429 0.97044 0.96330 1.23147 0.93096 0.90312 0.92641 1.49244 1.06832 1.48878 1.33143 1.17764 0.81014 0.78213 0.80801 1.90833 1.83011 1.40487 1.34425 1.86374 1.20968 1.69168 1.52455 1.22509 0.78500 0.93100 0.97731 1.22444 1.03102 1.01962 0.95745 1.21890 0.97549 1.02811 0.97023 1.22456 1.04481 0.94014 1.02483 1.23410 0.78646 0.97225 0.99090 0.75029 0.90369 0.87841 0.93033 0.90529 0.94542 0.86631 0.90831 0.91551 0.92224 0.88510 0.91941 0.91897 0.87224 0.91524 0.92011 0.88398 0.92641 0.89046 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.15 19.25 74.32 1.43 -6.72 16 2 C -0.21 -7.47 13.68 31.13 0.43 -7.04 16 3 C 0.24 8.07 6.14 84.57 0.52 8.59 16 4 N -0.60 -24.62 2.02 -712.54 -1.44 -26.06 16 5 C -0.25 -12.59 9.90 84.04 0.83 -11.76 16 6 H 0.05 2.91 8.06 -2.92 -0.02 2.89 16 7 C 0.00 -0.11 5.29 84.86 0.45 0.34 16 8 N -0.94 -55.06 13.97 21.65 0.30 -54.76 16 9 Si 0.92 43.60 25.09 68.60 1.72 45.32 16 10 H -0.27 -12.14 6.68 99.48 0.66 -11.47 16 11 H -0.32 -15.85 7.11 99.48 0.71 -15.15 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.14 5.12 4.36 86.38 0.38 5.50 16 14 C -0.11 -3.46 4.14 -10.13 -0.04 -3.50 16 15 C 0.13 4.70 8.45 86.42 0.73 5.43 16 16 N -0.64 -21.67 3.62 -966.02 -3.49 -25.16 16 17 C 0.67 23.73 8.22 129.79 1.07 24.80 16 18 O -0.60 -22.20 12.61 19.78 0.25 -21.95 16 19 O -0.37 -12.60 9.88 -55.39 -0.55 -13.15 16 20 C 0.12 2.99 1.13 -10.79 -0.01 2.97 16 21 C -0.18 -4.05 8.37 71.98 0.60 -3.45 16 22 C -0.14 -2.59 8.85 71.98 0.64 -1.95 16 23 C -0.18 -4.25 8.37 71.98 0.60 -3.65 16 24 C 0.14 3.81 8.40 86.49 0.73 4.54 16 25 H 0.23 5.72 7.80 -4.42 -0.03 5.68 16 26 H 0.08 2.67 8.03 -2.38 -0.02 2.65 16 27 H 0.10 2.75 8.08 -2.39 -0.02 2.73 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 29 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 30 H 0.04 1.49 3.12 -2.39 -0.01 1.48 16 31 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.07 2.72 7.92 -2.39 -0.02 2.70 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.60 16 36 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.82 5.88 -2.39 -0.01 1.80 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 44 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -67.09 363.32 6.06 -61.03 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.92 Total: 20.62 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 8.35 Total: 14.10 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.63 Total: -105.98 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.30 Total: -35.09 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.72 Total: 45.32 kcal Total: -67.09 6.06 -61.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800383746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.234 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds