Wall clock time and date at job start Tue Mar 31 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34257 * 126.52238 * 60.02690 * 4 2 1 6 6 C 1.34049 * 108.22518 * 180.02562 * 5 4 2 7 7 N 1.29939 * 109.24565 * 359.97438 * 6 5 4 8 8 C 1.36077 * 108.47339 * 359.73874 * 7 6 5 9 9 C 1.47413 * 126.44657 * 180.30089 * 8 7 6 10 10 O 1.21613 * 119.99646 * 180.14337 * 9 8 7 11 11 N 1.34779 * 120.00488 * 0.14149 * 9 8 7 12 12 C 1.46492 * 120.00059 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47107 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.46858 * 300.00015 * 13 12 11 15 15 C 1.52998 * 109.47451 * 59.99865 * 13 12 11 16 16 C 1.52996 * 109.47326 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47313 * 179.97438 * 16 13 12 18 18 H 1.08005 * 119.99938 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00229 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00102 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47274 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99731 * 21 19 17 24 24 H 1.48499 * 109.47016 * 239.99870 * 21 19 17 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 30 30 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 32 32 H 1.08001 * 125.38296 * 180.02562 * 6 5 4 33 33 H 0.97004 * 119.99669 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47682 * 299.99812 * 12 11 9 35 35 H 1.09003 * 109.47386 * 60.00437 * 12 11 9 36 36 H 1.09004 * 109.46940 * 59.99853 * 14 13 12 37 37 H 1.08996 * 109.47304 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47286 * 300.00174 * 14 13 12 39 39 H 1.08995 * 109.46985 * 60.00226 * 15 13 12 40 40 H 1.08996 * 109.47079 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.47051 * 300.00578 * 15 13 12 42 42 H 1.09003 * 109.47162 * 299.99088 * 16 13 12 43 43 H 1.09003 * 109.47687 * 59.99579 * 16 13 12 44 44 H 0.97003 * 120.00403 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3674 -2.5058 6 6 2.4124 -1.2483 -3.3021 7 7 3.0317 -2.1249 -2.5696 8 6 2.8225 -1.8180 -1.2605 9 6 3.3497 -2.5496 -0.0944 10 8 3.0855 -2.1715 1.0309 11 7 4.1245 -3.6375 -0.2752 12 6 4.6488 -4.3642 0.8837 13 6 5.4913 -5.5482 0.4048 14 6 4.6217 -6.4863 -0.4348 15 6 6.6555 -5.0352 -0.4450 16 6 6.0384 -6.3075 1.6151 17 6 6.8676 -7.4741 1.1434 18 1 6.9917 -7.6560 0.0860 19 6 7.4680 -8.3092 2.0616 20 7 7.3174 -8.0875 3.3491 21 14 8.4953 -9.7556 1.4769 22 1 8.5087 -9.7852 -0.0078 23 1 9.8847 -9.6119 1.9810 24 1 7.9098 -11.0191 1.9925 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 2.4014 -1.2317 -4.3819 33 1 4.3355 -3.9389 -1.1728 34 1 5.2686 -3.6960 1.4816 35 1 3.8193 -4.7294 1.4893 36 1 4.2315 -5.9456 -1.2971 37 1 5.2217 -7.3301 -0.7756 38 1 3.7922 -6.8518 0.1705 39 1 7.2750 -4.3669 0.1531 40 1 7.2554 -5.8787 -0.7865 41 1 6.2654 -4.4944 -1.3073 42 1 6.6578 -5.6395 2.2135 43 1 5.2087 -6.6731 2.2202 44 1 7.7401 -8.6748 3.9952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805281384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:12 Heat of formation + Delta-G solvation = -44.344840 kcal Electronic energy + Delta-G solvation = -23879.365712 eV Core-core repulsion = 20411.549425 eV Total energy + Delta-G solvation = -3467.816287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.63540 -39.47338 -37.14264 -35.90049 -34.91761 -33.52712 -32.03914 -29.89657 -27.47767 -27.17558 -26.47405 -26.46461 -24.05757 -23.57887 -22.56387 -20.75404 -20.35136 -18.69253 -17.59930 -16.96517 -16.37761 -16.31622 -15.61922 -15.18785 -14.97509 -14.92608 -14.47277 -13.92552 -13.61694 -13.58057 -13.43829 -13.04606 -12.72344 -12.51673 -12.16874 -12.05055 -11.99602 -11.57555 -11.48386 -11.34702 -11.12283 -10.99623 -10.89948 -10.81255 -10.61444 -10.38383 -10.21778 -9.92135 -9.85291 -9.16693 -9.15917 -8.89860 -8.69011 -8.34596 -5.98544 -3.99460 0.97202 1.92662 2.36206 3.31436 3.33214 3.37258 3.39629 3.42584 3.89992 4.29196 4.46791 4.59233 4.78105 4.87501 5.01041 5.28156 5.31322 5.37209 5.48220 5.49459 5.52191 5.59199 5.64651 5.75710 5.79751 5.90874 5.91073 6.05972 6.22660 6.26677 6.29796 6.42855 6.58562 6.67399 6.78591 7.09386 7.10530 7.14648 7.25307 7.65844 7.77320 7.78144 8.00516 8.34061 8.43228 9.05503 9.63636 11.13007 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.003017 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.980477 B = 9279.676496 C = 9790.371243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.049 3.951 5 O -0.199 6.199 6 C 0.169 3.831 7 N -0.461 5.461 8 C -0.072 4.072 9 C 0.595 3.405 10 O -0.541 6.541 11 N -0.700 5.700 12 C 0.127 3.873 13 C -0.073 4.073 14 C -0.128 4.128 15 C -0.128 4.128 16 C 0.036 3.964 17 C -0.509 4.509 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.254 0.746 33 H 0.408 0.592 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 17.165 -12.046 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.049 4.049 3 C -0.203 4.203 4 C -0.007 4.007 5 O -0.085 6.085 6 C -0.059 4.059 7 N -0.190 5.190 8 C -0.192 4.192 9 C 0.380 3.620 10 O -0.420 6.420 11 N -0.350 5.350 12 C 0.004 3.996 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.001 4.001 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.211 1.211 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.269 0.731 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.049 16.834 -11.303 23.587 hybrid contribution 0.397 -0.557 -0.734 1.003 sum -11.652 16.277 -12.038 23.359 Atomic orbital electron populations 1.21849 0.93198 1.02647 1.02604 1.20351 0.96704 0.96407 0.91439 1.21849 1.01715 0.94131 1.02598 1.23798 0.97251 0.95637 0.84035 1.84343 1.59129 1.48762 1.16246 1.27996 0.93588 0.85522 0.98832 1.70763 1.21082 1.25746 1.01453 1.21626 1.06041 0.99394 0.92105 1.16741 0.78784 0.80454 0.86067 1.90723 1.60147 1.67799 1.23301 1.46032 1.49611 1.27656 1.11741 1.21725 0.97626 0.93511 0.86734 1.20914 0.94202 0.93160 0.99019 1.21771 0.99289 0.99554 0.97920 1.21767 0.98098 1.00791 0.97870 1.19095 0.95895 0.94397 0.90735 1.21229 1.30038 1.10709 0.92803 0.92175 1.25011 0.96743 0.97850 0.94924 1.69975 1.44560 1.38440 1.00463 0.86594 0.80151 0.82753 0.78843 1.19789 1.21152 1.21146 0.91081 0.92351 0.92118 0.84568 0.91080 0.92115 0.92353 0.73054 0.75570 0.91493 0.91483 0.95083 0.91379 0.93384 0.93379 0.91382 0.95087 0.96301 0.96304 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.18 37.16 0.34 -0.89 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.62 16 3 C -0.15 -1.23 9.18 37.16 0.34 -0.89 16 4 C 0.05 0.59 5.95 -35.08 -0.21 0.38 16 5 O -0.20 -2.01 10.73 6.51 0.07 -1.94 16 6 C 0.17 1.50 13.19 51.96 0.69 2.18 16 7 N -0.46 -5.81 11.06 -11.48 -0.13 -5.93 16 8 C -0.07 -1.01 6.99 -83.02 -0.58 -1.59 16 9 C 0.59 9.79 7.81 -12.52 -0.10 9.69 16 10 O -0.54 -9.89 14.47 5.27 0.08 -9.81 16 11 N -0.70 -11.38 4.95 -61.39 -0.30 -11.69 16 12 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 13 C -0.07 -1.42 0.54 -154.51 -0.08 -1.50 16 14 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 15 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 16 C 0.04 0.90 4.04 -27.89 -0.11 0.78 16 17 C -0.51 -13.63 7.65 -34.44 -0.26 -13.90 16 18 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 21 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.14 1.72 5.52 -51.93 -0.29 1.43 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.25 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.41 6.23 5.89 -40.82 -0.24 5.99 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 37 H 0.07 1.33 6.61 -51.93 -0.34 0.98 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 41 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -31.67 357.35 -5.83 -37.51 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.86 Total: 2.64 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 0.21 Total: -6.71 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.31 Total: -43.39 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.15 Total: -11.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.67 -5.83 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805281384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.837 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds