Wall clock time and date at job start Tue Mar 31 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34257 * 126.52238 * 60.02690 * 4 2 1 6 6 C 1.34049 * 108.22518 * 180.02562 * 5 4 2 7 7 N 1.29939 * 109.24565 * 359.97438 * 6 5 4 8 8 C 1.36077 * 108.47339 * 359.73874 * 7 6 5 9 9 C 1.47413 * 126.44657 * 180.30089 * 8 7 6 10 10 O 1.21613 * 119.99646 * 180.14337 * 9 8 7 11 11 N 1.34779 * 120.00488 * 0.14149 * 9 8 7 12 12 C 1.46492 * 120.00059 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47107 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.46858 * 300.00015 * 13 12 11 15 15 C 1.52998 * 109.47451 * 59.99865 * 13 12 11 16 16 C 1.52996 * 109.47326 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47313 * 179.97438 * 16 13 12 18 18 H 1.08005 * 119.99938 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00229 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00102 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47274 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99731 * 21 19 17 24 24 H 1.48499 * 109.47016 * 239.99870 * 21 19 17 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 30 30 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 32 32 H 1.08001 * 125.38296 * 180.02562 * 6 5 4 33 33 H 0.97004 * 119.99669 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47682 * 299.99812 * 12 11 9 35 35 H 1.09003 * 109.47386 * 60.00437 * 12 11 9 36 36 H 1.09004 * 109.46940 * 59.99853 * 14 13 12 37 37 H 1.08996 * 109.47304 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47286 * 300.00174 * 14 13 12 39 39 H 1.08995 * 109.46985 * 60.00226 * 15 13 12 40 40 H 1.08996 * 109.47079 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.47051 * 300.00578 * 15 13 12 42 42 H 1.09003 * 109.47162 * 299.99088 * 16 13 12 43 43 H 1.09003 * 109.47687 * 59.99579 * 16 13 12 44 44 H 0.97003 * 120.00403 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3674 -2.5058 6 6 2.4124 -1.2483 -3.3021 7 7 3.0317 -2.1249 -2.5696 8 6 2.8225 -1.8180 -1.2605 9 6 3.3497 -2.5496 -0.0944 10 8 3.0855 -2.1715 1.0309 11 7 4.1245 -3.6375 -0.2752 12 6 4.6488 -4.3642 0.8837 13 6 5.4913 -5.5482 0.4048 14 6 4.6217 -6.4863 -0.4348 15 6 6.6555 -5.0352 -0.4450 16 6 6.0384 -6.3075 1.6151 17 6 6.8676 -7.4741 1.1434 18 1 6.9917 -7.6560 0.0860 19 6 7.4680 -8.3092 2.0616 20 7 7.3174 -8.0875 3.3491 21 14 8.4953 -9.7556 1.4769 22 1 8.5087 -9.7852 -0.0078 23 1 9.8847 -9.6119 1.9810 24 1 7.9098 -11.0191 1.9925 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 2.4014 -1.2317 -4.3819 33 1 4.3355 -3.9389 -1.1728 34 1 5.2686 -3.6960 1.4816 35 1 3.8193 -4.7294 1.4893 36 1 4.2315 -5.9456 -1.2971 37 1 5.2217 -7.3301 -0.7756 38 1 3.7922 -6.8518 0.1705 39 1 7.2750 -4.3669 0.1531 40 1 7.2554 -5.8787 -0.7865 41 1 6.2654 -4.4944 -1.3073 42 1 6.6578 -5.6395 2.2135 43 1 5.2087 -6.6731 2.2202 44 1 7.7401 -8.6748 3.9952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805281384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:12 Heat of formation + Delta-G solvation = -66.329971 kcal Electronic energy + Delta-G solvation = -23880.319058 eV Core-core repulsion = 20411.549425 eV Total energy + Delta-G solvation = -3468.769633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.47965 -40.82094 -38.70951 -36.70594 -35.82318 -35.20406 -33.89493 -30.80527 -29.13287 -28.13311 -27.99706 -27.92063 -25.53609 -24.35879 -24.14203 -21.79091 -21.39045 -20.05763 -18.91778 -18.36589 -17.81860 -17.37622 -16.86323 -16.44657 -16.36015 -16.10511 -15.73041 -15.13492 -15.09193 -14.71782 -14.62454 -14.32646 -14.13062 -13.95744 -13.81999 -13.11457 -12.90799 -12.72899 -12.71051 -12.64368 -12.41992 -12.36158 -12.25536 -12.25378 -12.17572 -11.97187 -11.75754 -11.56684 -11.20341 -10.94254 -10.84201 -10.51615 -10.25483 -9.90124 -8.13753 -6.21246 0.03198 1.05819 1.41852 1.42991 1.53912 1.54984 2.12308 2.20450 2.45111 3.10562 3.20806 3.44886 3.72872 3.91725 3.99522 4.05013 4.06284 4.18494 4.22640 4.52361 4.61694 4.66954 4.69049 4.71505 4.73748 4.85529 4.88124 4.93278 5.04225 5.08382 5.09682 5.19713 5.25186 5.26224 5.38766 5.44575 5.47572 5.49935 5.56172 5.78088 5.89744 6.26979 6.33310 6.59953 6.93475 7.07015 7.46322 8.98986 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.003017 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.980477 B = 9279.676496 C = 9790.371243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 C -0.140 4.140 4 C 0.057 3.943 5 O -0.193 6.193 6 C 0.197 3.803 7 N -0.494 5.494 8 C -0.103 4.103 9 C 0.591 3.409 10 O -0.568 6.568 11 N -0.695 5.695 12 C 0.140 3.860 13 C -0.065 4.065 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.042 3.958 17 C -0.513 4.513 18 H 0.071 0.929 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.958 3.042 22 H -0.258 1.258 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.307 0.693 33 H 0.414 0.586 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.061 0.939 42 H -0.011 1.011 43 H -0.011 1.011 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.994 18.148 -15.224 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.001 4.001 5 O -0.079 6.079 6 C -0.032 4.032 7 N -0.223 5.223 8 C -0.221 4.221 9 C 0.378 3.622 10 O -0.448 6.448 11 N -0.345 5.345 12 C 0.016 3.984 13 C -0.065 4.065 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.004 3.996 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.201 4.201 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.182 1.182 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.322 0.678 33 H 0.252 0.748 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.759 17.814 -14.511 26.281 hybrid contribution 0.558 -0.778 0.212 0.981 sum -12.201 17.035 -14.299 25.368 Atomic orbital electron populations 1.21825 0.91533 1.02321 1.04053 1.20374 0.98048 0.97096 0.89909 1.21825 1.00911 0.92945 1.04049 1.23973 0.96131 0.94821 0.85141 1.84386 1.59155 1.48914 1.15455 1.29216 0.90442 0.83242 1.00274 1.70718 1.23109 1.27597 1.00846 1.21298 1.08074 1.00594 0.92144 1.17109 0.78180 0.80166 0.86708 1.90711 1.60972 1.68432 1.24721 1.45834 1.49837 1.27733 1.11135 1.21351 0.96761 0.92951 0.87301 1.20722 0.95150 0.93390 0.97278 1.21687 0.98533 0.99115 0.98511 1.21683 0.97223 1.00479 0.98453 1.18955 0.94332 0.94096 0.92192 1.21612 1.29426 1.10789 0.93301 0.91063 1.25926 0.98244 1.00943 0.94993 1.70122 1.46049 1.39875 1.01836 0.85496 0.78140 0.78960 0.79059 1.18171 1.20998 1.20989 0.89549 0.90983 0.93311 0.87253 0.89549 0.93331 0.90982 0.67847 0.74771 0.92804 0.92798 0.92013 0.92330 0.94169 0.94160 0.92331 0.92014 0.99273 0.99276 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 71.98 0.66 -1.49 16 2 C -0.04 -0.72 3.24 -11.54 -0.04 -0.75 16 3 C -0.14 -2.16 9.18 71.98 0.66 -1.50 16 4 C 0.06 1.29 5.95 25.19 0.15 1.44 16 5 O -0.19 -3.31 10.73 0.39 0.00 -3.30 16 6 C 0.20 2.75 13.19 130.52 1.72 4.47 16 7 N -0.49 -11.31 11.06 -305.15 -3.37 -14.68 16 8 C -0.10 -2.82 6.99 40.40 0.28 -2.54 16 9 C 0.59 19.70 7.81 86.66 0.68 20.38 16 10 O -0.57 -21.57 14.47 -4.07 -0.06 -21.62 16 11 N -0.69 -22.52 4.95 -466.38 -2.31 -24.83 16 12 C 0.14 5.27 4.56 86.38 0.39 5.66 16 13 C -0.06 -2.57 0.54 -52.18 -0.03 -2.60 16 14 C -0.12 -4.36 8.05 71.98 0.58 -3.79 16 15 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 16 C 0.04 2.16 4.04 29.85 0.12 2.28 16 17 C -0.51 -27.84 7.65 25.60 0.20 -27.65 16 18 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 20 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 21 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 2.84 5.52 -2.39 -0.01 2.83 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.31 0.33 8.06 -2.91 -0.02 0.31 16 33 H 0.41 12.13 5.89 -92.71 -0.55 11.58 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 1.83 6.86 -2.38 -0.02 1.82 16 37 H 0.06 2.22 6.61 -2.39 -0.02 2.20 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 2.22 6.62 -2.39 -0.02 2.20 16 41 H 0.06 1.83 6.86 -2.38 -0.02 1.82 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -71.21 357.35 3.44 -67.76 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.45 Total: 17.24 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 6.42 Total: -9.64 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -5.40 Total: -96.45 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.21 3.44 -67.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805281384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.434 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds