Wall clock time and date at job start Tue Mar 31 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 O 1.45198 * 109.46884 * 180.02562 * 9 8 7 11 11 C 1.34231 * 116.99983 * 180.02562 * 10 9 8 12 12 O 1.20822 * 120.00142 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99870 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47065 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47458 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47458 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47065 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99841 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99893 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47106 * 90.00052 * 21 19 17 23 23 H 1.48503 * 109.47172 * 209.99537 * 21 19 17 24 24 H 1.48501 * 109.47251 * 329.99643 * 21 19 17 25 25 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 26 26 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 27 27 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 28 28 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 29 29 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 31 31 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 32 32 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 34 34 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 36 36 H 1.09005 * 109.47107 * 299.99311 * 13 11 10 37 37 H 1.08998 * 109.47871 * 59.99674 * 13 11 10 38 38 H 1.09001 * 109.47487 * 299.99879 * 14 13 11 39 39 H 1.08998 * 109.47295 * 59.99586 * 14 13 11 40 40 H 1.09001 * 109.47474 * 300.00328 * 15 14 13 41 41 H 1.09008 * 109.46853 * 59.99733 * 15 14 13 42 42 H 1.09005 * 109.46784 * 300.00147 * 16 15 14 43 43 H 1.08998 * 109.47295 * 59.99994 * 16 15 14 44 44 H 0.96999 * 119.99519 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 6 1.0863 -4.3952 -1.4219 10 8 0.8173 -4.8213 -2.7836 11 6 0.3907 -6.0825 -2.9544 12 8 0.2473 -6.8066 -1.9978 13 6 0.0917 -6.5958 -4.3394 14 6 -0.3730 -8.0510 -4.2547 15 6 -0.6771 -8.5720 -5.6607 16 6 -1.1412 -10.0275 -5.5761 17 6 -1.4402 -10.5407 -6.9611 18 1 -1.3124 -9.8935 -7.8161 19 6 -1.8778 -11.8364 -7.1366 20 7 -2.0339 -12.6245 -6.0953 21 14 -2.2491 -12.4724 -8.8533 22 1 -1.0214 -13.0716 -9.4354 23 1 -3.3158 -13.5029 -8.7794 24 1 -2.7054 -11.3482 -9.7097 25 1 -0.3633 0.0031 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5112 28 1 4.4097 1.3412 -0.0122 29 1 4.4776 -1.2831 -0.0089 30 1 0.9328 -2.5761 0.6021 31 1 2.6188 -3.1229 0.4394 32 1 2.4683 -2.8547 -2.0212 33 1 0.7822 -2.3078 -1.8583 34 1 1.8623 -5.0274 -0.9903 35 1 0.1765 -4.4799 -0.8278 36 1 -0.6937 -5.9889 -4.7901 37 1 0.9921 -6.5373 -4.9509 38 1 0.4126 -8.6577 -3.8042 39 1 -1.2733 -8.1100 -3.6431 40 1 -1.4629 -7.9653 -6.1110 41 1 0.2230 -8.5130 -6.2727 42 1 -0.3551 -10.6338 -5.1261 43 1 -2.0412 -10.0869 -4.9641 44 1 -2.3421 -13.5359 -6.2188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:54 Heat of formation + Delta-G solvation = -59.592826 kcal Electronic energy + Delta-G solvation = -21941.694059 eV Core-core repulsion = 18473.216570 eV Total energy + Delta-G solvation = -3468.477489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49634 -40.57937 -37.21484 -35.65089 -35.03208 -32.74468 -32.17124 -31.95910 -29.96480 -27.46648 -26.74734 -25.59703 -23.05573 -22.33562 -21.77002 -20.72629 -20.10483 -20.04678 -17.84881 -17.31229 -17.10111 -16.28893 -16.14655 -15.84696 -15.73629 -14.88529 -14.47959 -14.41003 -14.15431 -13.64530 -13.56776 -13.26325 -13.19235 -12.89898 -12.75922 -12.67708 -12.37844 -12.05882 -11.80603 -11.74529 -11.70161 -11.04379 -10.85547 -10.64221 -10.61957 -10.51080 -10.46881 -10.33176 -10.03754 -9.69285 -9.32579 -9.05502 -8.73279 -8.34410 -5.99297 -4.01974 1.59872 2.15213 2.17654 2.61402 2.78658 3.31707 3.37978 3.41098 3.97089 4.07859 4.21589 4.24758 4.45859 4.46221 4.53227 4.66505 4.78508 4.86826 4.96966 5.04350 5.08711 5.18563 5.19967 5.27469 5.31563 5.36311 5.43827 5.51122 5.67129 5.88317 5.99930 6.13117 6.26936 6.38046 6.41706 6.71568 6.76269 6.89588 7.11956 7.68533 7.69877 7.73184 7.83123 8.01164 8.42910 9.05511 9.62014 11.11962 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.049403 B = 0.001700 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.635026 B =16465.112353 C =16540.556294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.206 3.794 3 N -0.493 5.493 4 C -0.028 4.028 5 C -0.058 4.058 6 N -0.455 5.455 7 C 0.107 3.893 8 C -0.136 4.136 9 C 0.069 3.931 10 O -0.361 6.361 11 C 0.461 3.539 12 O -0.504 6.504 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 24.394 13.590 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 N -0.213 5.213 4 C -0.176 4.176 5 C -0.190 4.190 6 N -0.139 5.139 7 C -0.016 4.016 8 C -0.175 4.175 9 C -0.006 4.006 10 O -0.278 6.278 11 C 0.305 3.695 12 O -0.391 6.391 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.187 0.813 29 H 0.192 0.808 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.644 24.680 13.975 29.650 hybrid contribution 0.304 -1.378 -0.744 1.595 sum 8.947 23.302 13.231 28.251 Atomic orbital electron populations 1.20235 0.84919 1.04254 1.03616 1.23364 0.95786 0.81322 1.05103 1.70267 1.02357 1.28306 1.20334 1.22308 0.94798 0.92818 1.07641 1.22740 0.87010 0.96974 1.12310 1.45376 1.06633 1.07069 1.54800 1.21718 1.02588 0.79687 0.97610 1.21898 1.03950 0.95217 0.96402 1.22770 1.01589 0.94431 0.81829 1.86519 1.77837 1.31914 1.31569 1.24257 0.72863 0.78939 0.93491 1.90679 1.48260 1.57034 1.43098 1.21628 1.04371 0.99351 0.89566 1.21584 1.01885 0.91044 1.00104 1.21654 1.00122 1.00046 0.92961 1.19101 0.96492 0.89148 0.97007 1.21272 1.44463 0.97120 0.93144 0.92676 1.25042 0.95696 0.97068 0.96749 1.69976 1.46939 1.07226 1.29290 0.86597 0.78004 0.78651 0.84746 1.20693 1.21240 1.19901 0.90106 0.89007 0.90708 0.81298 0.80828 0.88401 0.88297 0.89767 0.89775 0.90870 0.90800 0.87786 0.87811 0.91534 0.91524 0.93164 0.93184 0.96547 0.96526 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.04 36.00 0.36 -0.04 16 2 C 0.21 1.81 7.90 -155.41 -1.23 0.58 16 3 N -0.49 -5.44 11.25 -10.82 -0.12 -5.56 16 4 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 5 C -0.06 -0.42 11.58 -16.56 -0.19 -0.62 16 6 N -0.46 -3.28 2.75 -113.91 -0.31 -3.60 16 7 C 0.11 0.49 5.67 -4.04 -0.02 0.47 16 8 C -0.14 -0.78 5.92 -26.73 -0.16 -0.94 16 9 C 0.07 0.53 5.47 37.16 0.20 0.74 16 10 O -0.36 -3.92 10.22 -39.26 -0.40 -4.33 16 11 C 0.46 6.06 7.96 36.01 0.29 6.34 16 12 O -0.50 -8.11 15.73 -18.75 -0.29 -8.41 16 13 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 14 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 15 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 16 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.30 7.34 -51.93 -0.38 -0.08 16 28 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.10 0.32 7.94 -51.93 -0.41 -0.09 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.51 7.64 -51.93 -0.40 0.12 16 34 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 39 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -35.17 374.47 -9.19 -44.37 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -7.49 Total: -5.44 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.93 Total: -12.94 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.30 Total: -35.50 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.70 Total: -12.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.17 -9.19 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.225 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds