Wall clock time and date at job start Tue Mar 31 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 O 1.45198 * 109.46884 * 180.02562 * 9 8 7 11 11 C 1.34231 * 116.99983 * 180.02562 * 10 9 8 12 12 O 1.20822 * 120.00142 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99870 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47065 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47458 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47458 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47065 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99841 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99893 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47106 * 90.00052 * 21 19 17 23 23 H 1.48503 * 109.47172 * 209.99537 * 21 19 17 24 24 H 1.48501 * 109.47251 * 329.99643 * 21 19 17 25 25 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 26 26 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 27 27 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 28 28 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 29 29 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 31 31 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 32 32 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 34 34 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 36 36 H 1.09005 * 109.47107 * 299.99311 * 13 11 10 37 37 H 1.08998 * 109.47871 * 59.99674 * 13 11 10 38 38 H 1.09001 * 109.47487 * 299.99879 * 14 13 11 39 39 H 1.08998 * 109.47295 * 59.99586 * 14 13 11 40 40 H 1.09001 * 109.47474 * 300.00328 * 15 14 13 41 41 H 1.09008 * 109.46853 * 59.99733 * 15 14 13 42 42 H 1.09005 * 109.46784 * 300.00147 * 16 15 14 43 43 H 1.08998 * 109.47295 * 59.99994 * 16 15 14 44 44 H 0.96999 * 119.99519 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 6 1.0863 -4.3952 -1.4219 10 8 0.8173 -4.8213 -2.7836 11 6 0.3907 -6.0825 -2.9544 12 8 0.2473 -6.8066 -1.9978 13 6 0.0917 -6.5958 -4.3394 14 6 -0.3730 -8.0510 -4.2547 15 6 -0.6771 -8.5720 -5.6607 16 6 -1.1412 -10.0275 -5.5761 17 6 -1.4402 -10.5407 -6.9611 18 1 -1.3124 -9.8935 -7.8161 19 6 -1.8778 -11.8364 -7.1366 20 7 -2.0339 -12.6245 -6.0953 21 14 -2.2491 -12.4724 -8.8533 22 1 -1.0214 -13.0716 -9.4354 23 1 -3.3158 -13.5029 -8.7794 24 1 -2.7054 -11.3482 -9.7097 25 1 -0.3633 0.0031 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5112 28 1 4.4097 1.3412 -0.0122 29 1 4.4776 -1.2831 -0.0089 30 1 0.9328 -2.5761 0.6021 31 1 2.6188 -3.1229 0.4394 32 1 2.4683 -2.8547 -2.0212 33 1 0.7822 -2.3078 -1.8583 34 1 1.8623 -5.0274 -0.9903 35 1 0.1765 -4.4799 -0.8278 36 1 -0.6937 -5.9889 -4.7901 37 1 0.9921 -6.5373 -4.9509 38 1 0.4126 -8.6577 -3.8042 39 1 -1.2733 -8.1100 -3.6431 40 1 -1.4629 -7.9653 -6.1110 41 1 0.2230 -8.5130 -6.2727 42 1 -0.3551 -10.6338 -5.1261 43 1 -2.0412 -10.0869 -4.9641 44 1 -2.3421 -13.5359 -6.2188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:54 Heat of formation + Delta-G solvation = -78.637758 kcal Electronic energy + Delta-G solvation = -21942.519909 eV Core-core repulsion = 18473.216570 eV Total energy + Delta-G solvation = -3469.303339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.05035 -41.55329 -38.11355 -36.65205 -36.22305 -34.65688 -32.73456 -32.56544 -31.56395 -28.19487 -27.73653 -26.76363 -24.51419 -23.05630 -22.33124 -22.05487 -21.46989 -20.62978 -18.72449 -18.37946 -17.98508 -17.92730 -17.11731 -16.55246 -16.48659 -16.41285 -15.83497 -15.14272 -14.86283 -14.57580 -14.37662 -14.17871 -14.01996 -13.88677 -13.57831 -13.55230 -13.43666 -13.22566 -13.17696 -12.83378 -12.58413 -12.37978 -12.35769 -12.18913 -12.17744 -11.63780 -11.57286 -11.37453 -11.29322 -11.05653 -10.95721 -10.63121 -10.54014 -9.29739 -8.18446 -6.30011 1.03881 1.17460 1.41368 1.42943 1.51336 1.54171 1.94773 2.16415 2.42437 3.14667 3.54333 3.60958 3.63505 3.75691 3.90673 3.99238 4.05358 4.09855 4.10467 4.29031 4.37979 4.46384 4.54021 4.57500 4.64441 4.70112 4.78533 4.79855 4.83248 4.86585 4.94334 5.08806 5.15380 5.28369 5.32962 5.34780 5.43273 5.57421 5.78603 5.83529 5.88952 6.25115 6.26130 6.72917 6.88534 7.14724 7.39598 8.93505 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.049403 B = 0.001700 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.635026 B =16465.112353 C =16540.556294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.192 3.808 3 N -0.538 5.538 4 C -0.058 4.058 5 C -0.053 4.053 6 N -0.455 5.455 7 C 0.107 3.893 8 C -0.123 4.123 9 C 0.063 3.937 10 O -0.359 6.359 11 C 0.468 3.532 12 O -0.541 6.541 13 C -0.104 4.104 14 C -0.100 4.100 15 C -0.097 4.097 16 C 0.018 3.982 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.260 1.260 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.180 0.820 29 H 0.203 0.797 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.062 0.938 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 25.199 12.526 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 N -0.258 5.258 4 C -0.205 4.205 5 C -0.185 4.185 6 N -0.138 5.138 7 C -0.015 4.015 8 C -0.161 4.161 9 C -0.011 4.011 10 O -0.275 6.275 11 C 0.313 3.687 12 O -0.431 6.431 13 C -0.142 4.142 14 C -0.138 4.138 15 C -0.135 4.135 16 C -0.020 4.020 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.792 3.208 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.197 0.803 29 H 0.220 0.780 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.005 0.995 43 H 0.006 0.994 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.999 25.515 12.904 29.976 hybrid contribution 0.225 -1.607 -0.351 1.660 sum 9.223 23.909 12.553 28.536 Atomic orbital electron populations 1.20339 0.83173 1.04883 1.04520 1.23873 0.96935 0.81442 1.04758 1.70216 1.03578 1.30066 1.21969 1.22674 0.94734 0.94151 1.08917 1.23198 0.87933 0.96775 1.10636 1.45529 1.06459 1.07689 1.54120 1.21883 1.04069 0.78502 0.97075 1.21767 1.03494 0.93677 0.97158 1.23020 1.02163 0.95537 0.80352 1.86489 1.77149 1.30453 1.33455 1.24226 0.72091 0.79285 0.93125 1.90675 1.50053 1.58116 1.44223 1.21497 1.06190 0.96481 0.89986 1.21350 1.00878 0.93934 0.97644 1.21446 1.00806 0.96020 0.95185 1.19066 0.94404 0.93006 0.95477 1.21767 1.44239 0.97697 0.94350 0.91630 1.26054 0.95424 0.97461 1.01329 1.70124 1.47919 1.07665 1.31947 0.85413 0.77971 0.78205 0.79235 1.19798 1.20993 1.18436 0.89006 0.89378 0.89060 0.80287 0.78045 0.86758 0.86489 0.90254 0.90007 0.90476 0.90203 0.85330 0.85407 0.93082 0.93034 0.91885 0.91915 0.99452 0.99411 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.04 71.24 0.72 0.02 16 2 C 0.19 3.20 7.90 138.13 1.09 4.29 16 3 N -0.54 -11.91 11.25 -188.13 -2.12 -14.02 16 4 C -0.06 -1.03 11.87 83.52 0.99 -0.04 16 5 C -0.05 -0.69 11.58 83.09 0.96 0.27 16 6 N -0.45 -5.75 2.75 -514.30 -1.41 -7.17 16 7 C 0.11 0.69 5.67 86.38 0.49 1.18 16 8 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 9 C 0.06 0.85 5.47 71.98 0.39 1.24 16 10 O -0.36 -6.96 10.22 -51.42 -0.53 -7.48 16 11 C 0.47 11.46 7.96 71.24 0.57 12.02 16 12 O -0.54 -17.03 15.73 21.98 0.35 -16.68 16 13 C -0.10 -2.36 5.81 29.85 0.17 -2.19 16 14 C -0.10 -3.28 4.50 30.59 0.14 -3.14 16 15 C -0.10 -3.74 5.15 30.59 0.16 -3.58 16 16 C 0.02 0.93 4.97 29.85 0.15 1.08 16 17 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 18 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 20 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 21 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.55 7.34 -2.39 -0.02 0.54 16 28 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 30 H 0.11 0.41 7.94 -2.39 -0.02 0.39 16 31 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.81 7.64 -2.39 -0.02 0.79 16 34 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 35 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 36 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 42 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.83 374.47 6.26 -71.58 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.95 Total: 5.27 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 6.70 Total: -20.16 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -3.25 Total: -78.66 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.18 Total: -24.17 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -77.83 6.26 -71.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.061 kcal (2) G-P(sol) polarization free energy of solvation -77.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds