Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 C 1.53003 * 109.47484 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.46926 * 179.97438 * 9 8 7 11 11 O 1.45201 * 109.47156 * 179.97438 * 10 9 8 12 12 C 1.34229 * 117.00568 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00486 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47145 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47145 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99999 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00296 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99729 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00234 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47262 * 89.99857 * 20 18 16 22 22 H 1.48500 * 109.47464 * 210.00174 * 20 18 16 23 23 H 1.48504 * 109.47187 * 329.99984 * 20 18 16 24 24 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 25 25 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 26 26 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 27 27 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 28 28 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 29 29 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 30 30 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 31 31 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 32 32 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 33 33 H 1.09002 * 109.46848 * 300.00025 * 8 7 6 34 34 H 1.08995 * 109.47108 * 59.99851 * 8 7 6 35 35 H 1.09002 * 109.46935 * 299.99662 * 9 8 7 36 36 H 1.08996 * 109.46968 * 60.00021 * 9 8 7 37 37 H 1.09002 * 109.47138 * 299.99660 * 10 9 8 38 38 H 1.09006 * 109.47172 * 60.00232 * 10 9 8 39 39 H 1.09001 * 109.46689 * 300.00265 * 14 12 11 40 40 H 1.08998 * 109.46927 * 60.00023 * 14 12 11 41 41 H 1.08994 * 109.47600 * 300.00554 * 15 14 12 42 42 H 1.09008 * 109.46939 * 60.00308 * 15 14 12 43 43 H 0.96993 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.07995 * 126.12756 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 6 6.9149 -2.0413 -1.1806 9 6 7.8124 -1.6655 -2.3615 10 6 9.0559 -2.5568 -2.3608 11 8 9.9073 -2.2007 -3.4817 12 6 11.0475 -2.8942 -3.6256 13 8 11.3251 -3.7697 -2.8405 14 6 11.9813 -2.5810 -4.7662 15 6 13.1963 -3.5084 -4.6998 16 6 14.1304 -3.1947 -5.8401 17 1 13.8825 -2.4120 -6.5416 18 6 15.3017 -3.9071 -5.9877 19 7 15.6034 -4.8607 -5.1337 20 14 16.4599 -3.5179 -7.4007 21 1 17.4347 -2.4833 -6.9711 22 1 17.1881 -4.7497 -7.7976 23 1 15.6775 -3.0112 -8.5568 24 6 2.3031 -1.0942 -0.0009 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 1.9950 2.1577 0.0033 29 1 5.3226 -1.3844 0.9319 30 1 4.4727 -2.5684 -0.0899 31 1 5.1235 -1.2900 -2.1125 32 1 5.9734 -0.1060 -1.0907 33 1 7.4629 -1.9003 -0.2490 34 1 6.6135 -3.0849 -1.2706 35 1 7.2646 -1.8062 -3.2933 36 1 8.1137 -0.6220 -2.2710 37 1 9.6035 -2.4158 -1.4289 38 1 8.7548 -3.6006 -2.4510 39 1 11.4614 -2.7297 -5.7126 40 1 12.3111 -1.5448 -4.6917 41 1 13.7160 -3.3593 -3.7534 42 1 12.8669 -4.5448 -4.7741 43 1 16.4272 -5.3621 -5.2378 44 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = -46.347112 kcal Electronic energy + Delta-G solvation = -21591.914215 eV Core-core repulsion = 18124.011103 eV Total energy + Delta-G solvation = -3467.903112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53511 -39.93186 -36.98274 -35.93216 -33.73806 -33.57445 -31.99849 -31.19993 -30.39518 -27.43731 -26.14381 -25.26452 -23.12491 -21.92491 -21.48187 -21.03540 -20.43219 -19.73665 -17.36554 -17.12348 -16.68646 -16.29399 -16.00772 -15.46902 -15.21915 -14.77532 -14.47098 -14.29981 -13.85899 -13.64032 -13.48823 -13.14983 -13.05117 -12.87950 -12.38427 -12.30099 -12.24596 -12.07632 -11.75271 -11.57520 -11.37674 -11.13241 -11.03161 -10.95747 -10.81174 -10.64303 -10.29228 -10.04350 -9.92138 -9.76705 -9.54294 -9.18042 -8.67200 -8.38068 -6.01960 -4.06837 1.54535 2.14163 2.44950 2.83444 3.08657 3.31433 3.37705 3.40783 4.02073 4.35273 4.43137 4.44821 4.55750 4.60285 4.72895 4.84021 4.90622 5.01529 5.09872 5.13132 5.25038 5.31735 5.33497 5.33785 5.41984 5.44345 5.55985 5.61989 5.66995 5.77602 5.80134 5.92491 6.00652 6.12456 6.20696 6.32465 6.66120 6.66842 6.95144 7.36431 7.66072 7.72987 7.97633 8.25813 8.41923 9.00304 9.57256 11.09089 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.059754 B = 0.001584 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.475349 B =17671.709090 C =17907.515183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.246 4.246 3 C 0.045 3.955 4 N -0.292 5.292 5 N -0.370 5.370 6 C 0.133 3.867 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.117 4.117 10 C 0.063 3.937 11 O -0.368 6.368 12 C 0.456 3.544 13 O -0.507 6.507 14 C -0.104 4.104 15 C 0.032 3.968 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.051 3.949 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.181 0.819 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.730 8.320 11.128 32.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.257 4.257 3 C -0.141 4.141 4 N -0.113 5.113 5 N -0.152 5.152 6 C 0.012 3.988 7 C -0.167 4.167 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.011 4.011 11 O -0.286 6.286 12 C 0.300 3.700 13 O -0.394 6.394 14 C -0.141 4.141 15 C -0.005 4.005 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.095 4.095 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.198 0.802 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -28.168 8.166 11.443 31.481 hybrid contribution -0.170 -0.283 -0.564 0.654 sum -28.338 7.883 10.878 31.361 Atomic orbital electron populations 1.20044 0.89364 1.02069 1.01524 1.20164 0.97143 0.91925 1.16504 1.23821 0.89998 0.99849 1.00401 1.77349 1.21222 0.88903 1.23823 1.48673 1.05422 1.04766 1.56347 1.21814 0.83872 0.92419 1.00726 1.21840 0.95658 1.01670 0.97543 1.21424 0.95219 0.99747 0.98910 1.21509 0.94418 1.00434 0.99113 1.22911 0.90449 0.99184 0.88540 1.86548 1.32824 1.60501 1.48719 1.24765 0.79717 0.78678 0.86842 1.90629 1.73848 1.30891 1.44007 1.21761 0.95427 1.03941 0.92997 1.19020 0.89397 0.94095 0.97957 1.21164 1.04759 1.19044 1.11729 0.92295 1.25022 0.97948 0.94965 0.96376 1.69995 1.24646 1.21993 1.36175 0.86538 0.80910 0.77774 0.82426 1.20595 1.21180 1.19789 1.22374 0.84304 1.00074 1.02746 0.92165 0.92253 0.91916 0.80205 0.89583 0.88538 0.91158 0.90097 0.91071 0.91228 0.90757 0.90632 0.91562 0.91613 0.88974 0.88967 0.95600 0.95595 0.92855 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.37 36.01 0.37 0.02 16 2 C -0.25 -1.83 6.10 -105.05 -0.64 -2.48 16 3 C 0.05 0.39 11.96 -17.36 -0.21 0.18 16 4 N -0.29 -3.07 12.42 30.62 0.38 -2.69 16 5 N -0.37 -3.15 3.68 -61.37 -0.23 -3.38 16 6 C 0.13 0.81 6.51 -4.05 -0.03 0.78 16 7 C -0.13 -0.89 5.40 -26.73 -0.14 -1.04 16 8 C -0.11 -0.79 5.21 -26.73 -0.14 -0.93 16 9 C -0.12 -1.11 5.59 -26.73 -0.15 -1.26 16 10 C 0.06 0.83 5.47 37.15 0.20 1.03 16 11 O -0.37 -6.13 10.22 -39.26 -0.40 -6.53 16 12 C 0.46 9.13 7.96 36.01 0.29 9.42 16 13 O -0.51 -11.69 15.73 -18.75 -0.29 -11.98 16 14 C -0.10 -2.15 5.75 -27.89 -0.16 -2.31 16 15 C 0.03 0.86 4.26 -27.89 -0.12 0.75 16 16 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 20 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.05 0.37 11.36 -17.22 -0.20 0.17 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 38 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.03 0.74 8.10 -51.92 -0.42 0.32 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -34.72 377.11 -8.04 -42.76 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -7.57 Total: -4.73 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.33 Total: -9.25 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.89 Total: -32.43 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.70 Total: -18.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.72 -8.04 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.584 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds