Wall clock time and date at job start Tue Mar 31 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 C 1.53003 * 109.47484 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.46926 * 179.97438 * 9 8 7 11 11 O 1.45201 * 109.47156 * 179.97438 * 10 9 8 12 12 C 1.34229 * 117.00568 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00486 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47145 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47145 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99999 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00296 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99729 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00234 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47262 * 89.99857 * 20 18 16 22 22 H 1.48500 * 109.47464 * 210.00174 * 20 18 16 23 23 H 1.48504 * 109.47187 * 329.99984 * 20 18 16 24 24 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 25 25 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 26 26 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 27 27 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 28 28 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 29 29 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 30 30 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 31 31 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 32 32 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 33 33 H 1.09002 * 109.46848 * 300.00025 * 8 7 6 34 34 H 1.08995 * 109.47108 * 59.99851 * 8 7 6 35 35 H 1.09002 * 109.46935 * 299.99662 * 9 8 7 36 36 H 1.08996 * 109.46968 * 60.00021 * 9 8 7 37 37 H 1.09002 * 109.47138 * 299.99660 * 10 9 8 38 38 H 1.09006 * 109.47172 * 60.00232 * 10 9 8 39 39 H 1.09001 * 109.46689 * 300.00265 * 14 12 11 40 40 H 1.08998 * 109.46927 * 60.00023 * 14 12 11 41 41 H 1.08994 * 109.47600 * 300.00554 * 15 14 12 42 42 H 1.09008 * 109.46939 * 60.00308 * 15 14 12 43 43 H 0.96993 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.07995 * 126.12756 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 6 6.9149 -2.0413 -1.1806 9 6 7.8124 -1.6655 -2.3615 10 6 9.0559 -2.5568 -2.3608 11 8 9.9073 -2.2007 -3.4817 12 6 11.0475 -2.8942 -3.6256 13 8 11.3251 -3.7697 -2.8405 14 6 11.9813 -2.5810 -4.7662 15 6 13.1963 -3.5084 -4.6998 16 6 14.1304 -3.1947 -5.8401 17 1 13.8825 -2.4120 -6.5416 18 6 15.3017 -3.9071 -5.9877 19 7 15.6034 -4.8607 -5.1337 20 14 16.4599 -3.5179 -7.4007 21 1 17.4347 -2.4833 -6.9711 22 1 17.1881 -4.7497 -7.7976 23 1 15.6775 -3.0112 -8.5568 24 6 2.3031 -1.0942 -0.0009 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 1.9950 2.1577 0.0033 29 1 5.3226 -1.3844 0.9319 30 1 4.4727 -2.5684 -0.0899 31 1 5.1235 -1.2900 -2.1125 32 1 5.9734 -0.1060 -1.0907 33 1 7.4629 -1.9003 -0.2490 34 1 6.6135 -3.0849 -1.2706 35 1 7.2646 -1.8062 -3.2933 36 1 8.1137 -0.6220 -2.2710 37 1 9.6035 -2.4158 -1.4289 38 1 8.7548 -3.6006 -2.4510 39 1 11.4614 -2.7297 -5.7126 40 1 12.3111 -1.5448 -4.6917 41 1 13.7160 -3.3593 -3.7534 42 1 12.8669 -4.5448 -4.7741 43 1 16.4272 -5.3621 -5.2378 44 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:11 Heat of formation + Delta-G solvation = -65.703564 kcal Electronic energy + Delta-G solvation = -21592.753573 eV Core-core repulsion = 18124.011103 eV Total energy + Delta-G solvation = -3468.742470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08087 -41.46842 -38.07682 -36.94665 -35.65382 -34.41924 -33.15533 -32.50969 -31.18701 -28.43556 -27.58930 -26.08496 -24.36129 -23.33054 -22.22323 -21.59347 -21.37972 -20.95887 -19.07035 -18.13879 -17.86847 -17.67366 -17.00037 -16.78039 -16.47650 -16.07901 -15.46328 -15.21102 -14.71206 -14.52177 -14.27000 -14.20464 -14.01126 -13.92878 -13.59710 -13.33346 -13.27063 -12.96972 -12.83503 -12.70311 -12.54359 -12.43868 -12.34863 -12.10851 -12.01288 -11.75743 -11.72477 -11.44405 -11.41892 -11.36426 -11.24360 -10.58203 -10.36165 -9.20249 -8.20575 -6.34466 0.99424 1.22946 1.43143 1.45533 1.56351 1.61977 1.76904 1.89193 2.43004 3.13287 3.46837 3.74246 3.85379 3.88583 4.00604 4.03705 4.11454 4.30204 4.32507 4.37121 4.42097 4.44566 4.50503 4.53779 4.61336 4.68757 4.80896 4.82623 4.90300 4.97048 5.01715 5.07258 5.23215 5.28086 5.31764 5.34704 5.42732 5.48262 5.54269 5.79865 5.79905 6.12627 6.19618 6.78738 6.78834 6.86060 7.35908 8.92095 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.059754 B = 0.001584 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.475349 B =17671.709090 C =17907.515183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.260 4.260 3 C 0.033 3.967 4 N -0.337 5.337 5 N -0.378 5.378 6 C 0.128 3.872 7 C -0.118 4.118 8 C -0.106 4.106 9 C -0.109 4.109 10 C 0.056 3.944 11 O -0.360 6.360 12 C 0.465 3.535 13 O -0.545 6.545 14 C -0.096 4.096 15 C 0.037 3.963 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.256 1.256 24 C 0.048 3.952 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.196 0.804 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.115 0.885 41 H -0.010 1.010 42 H -0.010 1.010 43 H 0.264 0.736 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.179 8.911 10.238 34.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.271 4.271 3 C -0.152 4.152 4 N -0.159 5.159 5 N -0.160 5.160 6 C 0.008 3.992 7 C -0.156 4.156 8 C -0.145 4.145 9 C -0.146 4.146 10 C -0.018 4.018 11 O -0.277 6.277 12 C 0.310 3.690 13 O -0.435 6.435 14 C -0.133 4.133 15 C 0.000 4.000 16 C -0.583 4.583 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.180 1.180 24 C -0.098 4.098 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.213 0.787 29 H 0.106 0.894 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.073 0.927 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -29.654 8.794 10.547 32.680 hybrid contribution 0.188 -0.464 -0.222 0.547 sum -29.467 8.330 10.325 32.315 Atomic orbital electron populations 1.20070 0.87716 1.02908 1.01966 1.20553 0.98434 0.91682 1.16449 1.24248 0.89903 1.01164 0.99886 1.77277 1.22458 0.90462 1.25688 1.48870 1.06462 1.04308 1.56402 1.21986 0.83415 0.93551 1.00230 1.21681 0.95675 1.00419 0.97865 1.21364 0.94644 1.00562 0.97881 1.21508 0.93072 0.99483 1.00579 1.23297 0.90973 1.00356 0.87165 1.86512 1.31754 1.59452 1.50011 1.24483 0.80397 0.78091 0.86014 1.90621 1.74923 1.32661 1.45337 1.21518 0.93732 1.03470 0.94570 1.18806 0.91555 0.93586 0.96042 1.21652 1.05138 1.19332 1.12200 0.90469 1.26094 1.00059 0.94598 0.99354 1.70160 1.25445 1.23400 1.38524 0.85308 0.78368 0.77595 0.78902 1.19730 1.21096 1.18003 1.22966 0.83752 1.01520 1.01517 0.91845 0.91138 0.91395 0.78695 0.89401 0.85620 0.91617 0.92109 0.90528 0.89666 0.90355 0.90836 0.91685 0.91353 0.86628 0.86708 0.99191 0.99107 0.92746 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.37 71.24 0.74 0.18 16 2 C -0.26 -3.56 6.10 -20.14 -0.12 -3.69 16 3 C 0.03 0.56 11.96 85.23 1.02 1.58 16 4 N -0.34 -7.08 12.42 -57.02 -0.71 -7.78 16 5 N -0.38 -6.03 3.68 -348.07 -1.28 -7.31 16 6 C 0.13 1.35 6.51 86.38 0.56 1.91 16 7 C -0.12 -1.49 5.40 30.59 0.17 -1.33 16 8 C -0.11 -1.27 5.21 30.60 0.16 -1.11 16 9 C -0.11 -1.90 5.59 30.59 0.17 -1.73 16 10 C 0.06 1.40 5.47 71.98 0.39 1.79 16 11 O -0.36 -11.60 10.22 -51.41 -0.53 -12.12 16 12 C 0.46 18.53 7.96 71.24 0.57 19.10 16 13 O -0.55 -25.72 15.73 21.96 0.35 -25.37 16 14 C -0.10 -3.90 5.75 29.85 0.17 -3.73 16 15 C 0.04 2.04 4.26 29.85 0.13 2.17 16 16 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 17 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 20 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 24 C 0.05 0.61 11.36 83.54 0.95 1.56 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.13 0.56 8.07 -2.38 -0.02 0.54 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 38 H 0.07 1.70 8.13 -2.38 -0.02 1.68 16 39 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 40 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 41 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 42 H -0.01 -0.58 8.10 -2.38 -0.02 -0.60 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -77.01 377.11 6.69 -70.32 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.95 Total: 7.88 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.60 Total: -13.42 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.70 Total: -73.08 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.18 Total: -37.49 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.01 6.69 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.611 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds