Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47048 * 2 1 4 4 N 1.30620 * 125.42380 * 90.02669 * 3 2 1 5 5 C 1.33692 * 108.99989 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.27493 * 180.02562 * 5 4 3 7 7 C 1.36342 * 107.44745 * 359.97438 * 5 4 3 8 8 C 1.46724 * 126.64081 * 179.97438 * 7 5 4 9 9 O 1.21688 * 120.00024 * 5.93575 * 8 7 5 10 10 N 1.34777 * 120.00016 * 185.93172 * 8 7 5 11 11 C 1.46502 * 120.00034 * 4.59138 * 10 8 7 12 12 C 1.50699 * 109.47267 * 274.98124 * 11 10 8 13 13 H 1.08007 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00078 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99915 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47089 * 90.00513 * 16 14 12 18 18 H 1.48504 * 109.47024 * 210.00154 * 16 14 12 19 19 H 1.48490 * 109.47218 * 330.00067 * 16 14 12 20 20 C 1.46503 * 120.00031 * 184.86705 * 10 8 7 21 21 C 1.52996 * 109.47191 * 275.60635 * 20 10 8 22 22 C 1.52995 * 109.47355 * 174.99879 * 21 20 10 23 23 C 1.53001 * 109.47312 * 295.00294 * 21 20 10 24 24 O 1.33660 * 125.42485 * 270.31395 * 3 2 1 25 25 H 1.08996 * 109.47028 * 60.00140 * 1 2 3 26 26 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47303 * 299.99907 * 1 2 3 28 28 H 1.08998 * 109.47303 * 240.00093 * 2 1 3 29 29 H 1.09007 * 109.47106 * 120.00371 * 2 1 3 30 30 H 1.08997 * 109.46868 * 269.97252 * 6 5 4 31 31 H 1.08999 * 109.47266 * 29.97547 * 6 5 4 32 32 H 1.09005 * 109.47035 * 149.97369 * 6 5 4 33 33 H 1.09001 * 109.47067 * 34.98250 * 11 10 8 34 34 H 1.08998 * 109.47257 * 154.98222 * 11 10 8 35 35 H 0.96998 * 119.99577 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.47111 * 35.60877 * 20 10 8 37 37 H 1.09000 * 109.47191 * 155.60777 * 20 10 8 38 38 H 1.09004 * 109.47195 * 54.99594 * 21 20 10 39 39 H 1.09004 * 109.47201 * 59.99719 * 22 21 20 40 40 H 1.09000 * 109.47410 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47176 * 300.00139 * 22 21 20 42 42 H 1.09000 * 109.47595 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.46686 * 300.00233 * 23 21 20 44 44 H 1.09000 * 109.47259 * 59.99534 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7118 3.3437 0.6864 6 6 3.1121 4.4736 1.5996 7 6 2.7196 3.3668 -0.6768 8 6 3.1159 4.4918 -1.5313 9 8 3.5861 5.4977 -1.0335 10 7 2.9591 4.4110 -2.8675 11 6 2.3013 3.2431 -3.4586 12 6 3.3126 2.1435 -3.6564 13 1 4.3424 2.2990 -3.3700 14 6 2.9232 0.9387 -4.2019 15 7 1.6692 0.7492 -4.5502 16 14 4.1767 -0.4246 -4.4464 17 1 4.2269 -1.2749 -3.2300 18 1 3.7847 -1.2539 -5.6143 19 1 5.5150 0.1712 -4.6894 20 6 3.4519 5.4884 -3.7293 21 6 2.4027 6.5993 -3.8074 22 6 2.9660 7.7776 -4.6043 23 6 1.1475 6.0674 -4.5020 24 8 2.2849 2.1532 -1.0891 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2398 5.0886 1.8206 31 1 3.5139 4.0661 2.5273 32 1 3.8724 5.0835 1.1114 33 1 1.5117 2.8950 -2.7926 34 1 1.8700 3.5174 -4.4212 35 1 1.3954 -0.0983 -4.9343 36 1 4.3767 5.8905 -3.3155 37 1 3.6412 5.0965 -4.7286 38 1 2.1481 6.9301 -2.8005 39 1 3.2206 7.4468 -5.6112 40 1 2.2187 8.5692 -4.6596 41 1 3.8602 8.1566 -4.1094 42 1 0.4002 6.8589 -4.5581 43 1 1.4021 5.7365 -5.5089 44 1 0.7462 5.2278 -3.9343 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814640818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = -34.648076 kcal Electronic energy + Delta-G solvation = -25341.418638 eV Core-core repulsion = 21874.022835 eV Total energy + Delta-G solvation = -3467.395803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.75747 -39.14205 -36.24551 -34.78763 -33.86064 -33.76015 -32.32055 -30.29632 -27.81352 -27.50561 -26.80669 -25.52325 -24.16294 -22.93756 -21.17360 -20.75136 -20.04335 -18.95635 -16.89146 -16.49001 -16.07135 -15.70450 -15.38974 -14.60992 -14.52300 -14.35524 -14.27974 -13.65069 -13.24283 -13.09155 -12.86650 -12.67551 -12.46458 -12.31681 -12.23193 -11.98308 -11.83910 -11.57002 -11.44489 -11.41449 -11.07946 -10.99111 -10.89947 -10.71920 -10.60411 -10.39049 -10.30942 -10.20238 -10.05634 -9.76440 -9.36404 -8.55387 -8.26730 -7.73830 -6.17685 -4.22377 1.51517 2.94527 3.13573 3.19033 3.26768 3.31090 3.77005 3.85873 4.31116 4.38989 5.12486 5.16317 5.20910 5.26014 5.27255 5.39795 5.40777 5.43157 5.57977 5.83376 5.89965 5.95746 5.96421 5.98173 5.99134 6.11010 6.14295 6.18576 6.21134 6.28964 6.34169 6.37177 6.42198 6.46616 6.56890 6.70195 6.75104 6.82160 7.22063 7.45196 7.74805 8.04804 8.09128 8.26075 8.71548 8.85171 9.42494 10.89460 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.007902 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.194603 B = 3542.389742 C = 5231.152584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C 0.203 3.797 4 N -0.501 5.501 5 C 0.049 3.951 6 C -0.072 4.072 7 C -0.093 4.093 8 C 0.602 3.398 9 O -0.550 6.550 10 N -0.581 5.581 11 C 0.235 3.765 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.070 3.930 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.128 3.872 21 C -0.112 4.112 22 C -0.141 4.141 23 C -0.145 4.145 24 O -0.123 6.123 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 4.092 4.369 6.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.003 4.003 4 N -0.232 5.232 5 C -0.076 4.076 6 C -0.129 4.129 7 C -0.149 4.149 8 C 0.389 3.611 9 O -0.433 6.433 10 N -0.310 5.310 11 C 0.116 3.884 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.133 4.133 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.005 3.995 21 C -0.132 4.132 22 C -0.199 4.199 23 C -0.203 4.203 24 O -0.006 6.006 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.612 4.198 4.998 6.723 hybrid contribution 0.705 -0.851 -0.979 1.476 sum -0.907 3.346 4.019 5.308 Atomic orbital electron populations 1.21730 0.93223 1.02564 1.02895 1.20035 0.96831 0.84790 1.04923 1.26398 0.97442 0.96769 0.79672 1.70214 1.18914 1.03633 1.30438 1.21878 1.00109 0.94245 0.91377 1.20244 1.02252 0.93291 0.97108 1.22868 1.10650 0.87100 0.94308 1.16461 0.78757 0.83854 0.81986 1.90726 1.48145 1.30078 1.74335 1.48179 1.56259 1.21853 1.04671 1.19663 0.93149 0.81044 0.94573 1.21359 0.95335 0.98028 1.41591 0.92545 1.24818 0.95201 0.98058 0.95204 1.69921 1.15464 1.25103 1.42235 0.86649 0.81846 0.82056 0.77883 1.20509 1.21017 1.19893 1.21436 0.96155 0.86979 0.94938 1.21495 0.96221 0.95438 1.00025 1.21742 1.00654 0.97482 0.99977 1.21867 0.96864 1.00813 1.00706 1.85124 1.60329 1.20849 1.34250 0.91529 0.91314 0.92303 0.88427 0.88342 0.91023 0.91316 0.88913 0.93965 0.93825 0.92676 0.91133 0.90021 0.90939 0.92703 0.92914 0.92756 0.93519 0.92642 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.03 -0.43 6.56 -27.89 -0.18 -0.61 16 3 C 0.20 3.98 7.57 -12.80 -0.10 3.88 16 4 N -0.50 -9.87 11.26 -7.07 -0.08 -9.95 16 5 C 0.05 0.98 7.16 -82.47 -0.59 0.39 16 6 C -0.07 -1.17 9.94 36.00 0.36 -0.82 16 7 C -0.09 -2.03 6.68 -36.84 -0.25 -2.27 16 8 C 0.60 13.18 7.55 -12.83 -0.10 13.09 16 9 O -0.55 -12.04 14.38 5.20 0.07 -11.96 16 10 N -0.58 -12.37 2.20 -176.58 -0.39 -12.76 16 11 C 0.23 5.57 3.70 -5.19 -0.02 5.55 16 12 C -0.52 -13.55 7.89 -34.44 -0.27 -13.82 16 13 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -23.64 13.29 55.43 0.74 -22.90 16 16 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.13 2.31 4.73 -4.04 -0.02 2.29 16 21 C -0.11 -1.76 3.09 -90.62 -0.28 -2.04 16 22 C -0.14 -1.78 9.19 37.15 0.34 -1.43 16 23 C -0.15 -2.26 8.36 37.16 0.31 -1.95 16 24 O -0.12 -2.77 6.62 4.43 0.03 -2.74 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.58 6.37 -51.93 -0.33 1.25 16 33 H 0.04 1.08 5.89 -51.93 -0.31 0.78 16 34 H 0.04 1.06 6.86 -51.93 -0.36 0.71 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.07 1.27 7.67 -51.93 -0.40 0.87 16 37 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 38 H 0.07 1.24 8.02 -51.93 -0.42 0.83 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -28.70 359.46 -6.93 -35.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.18 Total: 1.57 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.52 Total: 2.36 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.27 Total: -45.61 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.70 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.70 -6.93 -35.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814640818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.984 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds