Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47048 * 2 1 4 4 N 1.30620 * 125.42380 * 90.02669 * 3 2 1 5 5 C 1.33692 * 108.99989 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.27493 * 180.02562 * 5 4 3 7 7 C 1.36342 * 107.44745 * 359.97438 * 5 4 3 8 8 C 1.46724 * 126.64081 * 179.97438 * 7 5 4 9 9 O 1.21688 * 120.00024 * 5.93575 * 8 7 5 10 10 N 1.34777 * 120.00016 * 185.93172 * 8 7 5 11 11 C 1.46502 * 120.00034 * 4.59138 * 10 8 7 12 12 C 1.50699 * 109.47267 * 274.98124 * 11 10 8 13 13 H 1.08007 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00078 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99915 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47089 * 90.00513 * 16 14 12 18 18 H 1.48504 * 109.47024 * 210.00154 * 16 14 12 19 19 H 1.48490 * 109.47218 * 330.00067 * 16 14 12 20 20 C 1.46503 * 120.00031 * 184.86705 * 10 8 7 21 21 C 1.52996 * 109.47191 * 275.60635 * 20 10 8 22 22 C 1.52995 * 109.47355 * 174.99879 * 21 20 10 23 23 C 1.53001 * 109.47312 * 295.00294 * 21 20 10 24 24 O 1.33660 * 125.42485 * 270.31395 * 3 2 1 25 25 H 1.08996 * 109.47028 * 60.00140 * 1 2 3 26 26 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47303 * 299.99907 * 1 2 3 28 28 H 1.08998 * 109.47303 * 240.00093 * 2 1 3 29 29 H 1.09007 * 109.47106 * 120.00371 * 2 1 3 30 30 H 1.08997 * 109.46868 * 269.97252 * 6 5 4 31 31 H 1.08999 * 109.47266 * 29.97547 * 6 5 4 32 32 H 1.09005 * 109.47035 * 149.97369 * 6 5 4 33 33 H 1.09001 * 109.47067 * 34.98250 * 11 10 8 34 34 H 1.08998 * 109.47257 * 154.98222 * 11 10 8 35 35 H 0.96998 * 119.99577 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.47111 * 35.60877 * 20 10 8 37 37 H 1.09000 * 109.47191 * 155.60777 * 20 10 8 38 38 H 1.09004 * 109.47195 * 54.99594 * 21 20 10 39 39 H 1.09004 * 109.47201 * 59.99719 * 22 21 20 40 40 H 1.09000 * 109.47410 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47176 * 300.00139 * 22 21 20 42 42 H 1.09000 * 109.47595 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.46686 * 300.00233 * 23 21 20 44 44 H 1.09000 * 109.47259 * 59.99534 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7118 3.3437 0.6864 6 6 3.1121 4.4736 1.5996 7 6 2.7196 3.3668 -0.6768 8 6 3.1159 4.4918 -1.5313 9 8 3.5861 5.4977 -1.0335 10 7 2.9591 4.4110 -2.8675 11 6 2.3013 3.2431 -3.4586 12 6 3.3126 2.1435 -3.6564 13 1 4.3424 2.2990 -3.3700 14 6 2.9232 0.9387 -4.2019 15 7 1.6692 0.7492 -4.5502 16 14 4.1767 -0.4246 -4.4464 17 1 4.2269 -1.2749 -3.2300 18 1 3.7847 -1.2539 -5.6143 19 1 5.5150 0.1712 -4.6894 20 6 3.4519 5.4884 -3.7293 21 6 2.4027 6.5993 -3.8074 22 6 2.9660 7.7776 -4.6043 23 6 1.1475 6.0674 -4.5020 24 8 2.2849 2.1532 -1.0891 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2398 5.0886 1.8206 31 1 3.5139 4.0661 2.5273 32 1 3.8724 5.0835 1.1114 33 1 1.5117 2.8950 -2.7926 34 1 1.8700 3.5174 -4.4212 35 1 1.3954 -0.0983 -4.9343 36 1 4.3767 5.8905 -3.3155 37 1 3.6412 5.0965 -4.7286 38 1 2.1481 6.9301 -2.8005 39 1 3.2206 7.4468 -5.6112 40 1 2.2187 8.5692 -4.6596 41 1 3.8602 8.1566 -4.1094 42 1 0.4002 6.8589 -4.5581 43 1 1.4021 5.7365 -5.5089 44 1 0.7462 5.2278 -3.9343 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814640818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = -51.467021 kcal Electronic energy + Delta-G solvation = -25342.147962 eV Core-core repulsion = 21874.022835 eV Total energy + Delta-G solvation = -3468.125128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.34094 -40.79331 -37.78877 -36.31537 -35.53458 -35.07518 -34.16752 -31.70169 -29.53386 -29.10459 -28.01373 -26.98385 -25.62259 -24.74909 -22.69928 -22.20801 -21.44778 -20.52971 -18.80158 -18.19906 -17.75668 -17.31541 -16.92033 -16.38065 -16.01840 -15.85896 -15.60941 -14.96931 -14.70083 -14.59853 -14.30528 -14.15394 -14.08182 -13.75719 -13.59626 -13.36811 -13.17278 -13.09299 -12.97744 -12.74773 -12.62794 -12.58676 -12.19823 -12.15017 -12.10830 -11.93371 -11.90759 -11.73270 -11.59515 -11.58461 -11.02427 -10.55797 -9.88569 -9.42326 -8.17285 -6.28943 -0.09775 1.35948 1.38679 1.40593 1.47865 1.61291 2.09531 2.23947 2.42721 2.92716 3.13184 3.60487 3.76601 3.93382 4.00365 4.15875 4.16552 4.21899 4.25558 4.56032 4.60426 4.64694 4.66738 4.72951 4.76640 4.83691 4.86689 4.89249 4.93032 4.98549 5.01490 5.05210 5.06003 5.19439 5.25617 5.26596 5.38873 5.42321 5.42789 5.64662 5.78583 6.06531 6.35252 6.62854 6.78713 7.07953 7.39269 8.88963 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.007902 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.194603 B = 3542.389742 C = 5231.152584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C 0.201 3.799 4 N -0.505 5.505 5 C 0.057 3.943 6 C -0.068 4.068 7 C -0.133 4.133 8 C 0.597 3.403 9 O -0.556 6.556 10 N -0.585 5.585 11 C 0.258 3.742 12 C -0.533 4.533 13 H 0.039 0.961 14 C 0.035 3.965 15 N -0.910 5.910 16 Si 0.940 3.060 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.123 3.877 21 C -0.105 4.105 22 C -0.133 4.133 23 C -0.140 4.140 24 O -0.150 6.150 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 3.895 4.903 6.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.004 4.004 4 N -0.236 5.236 5 C -0.069 4.069 6 C -0.125 4.125 7 C -0.189 4.189 8 C 0.385 3.615 9 O -0.440 6.440 10 N -0.313 5.313 11 C 0.138 3.862 12 C -0.571 4.571 13 H 0.058 0.942 14 C -0.166 4.166 15 N -0.549 5.549 16 Si 0.766 3.234 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.203 1.203 20 C 0.001 3.999 21 C -0.124 4.124 22 C -0.191 4.191 23 C -0.197 4.197 24 O -0.034 6.034 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.498 4.020 5.532 7.001 hybrid contribution 0.645 -0.813 -1.091 1.506 sum -0.853 3.207 4.441 5.544 Atomic orbital electron populations 1.21696 0.91682 1.04334 1.01899 1.20341 0.98032 0.82466 1.05882 1.27409 0.95987 0.97921 0.79059 1.70278 1.19499 1.03590 1.30210 1.22474 0.98211 0.94975 0.91217 1.20335 1.02726 0.92266 0.97139 1.23022 1.13188 0.87401 0.95252 1.16576 0.78707 0.84061 0.82151 1.90697 1.48600 1.30277 1.74383 1.48173 1.56182 1.21966 1.04962 1.19203 0.92234 0.81412 0.93389 1.21404 0.94772 0.99104 1.41853 0.94248 1.25394 0.96662 0.99695 0.94833 1.69996 1.16650 1.25737 1.42508 0.85836 0.79579 0.79791 0.78215 1.19686 1.20183 1.20308 1.21650 0.97026 0.86922 0.94294 1.21422 0.95557 0.95638 0.99826 1.21693 1.01208 0.96389 0.99828 1.21812 0.97339 1.00450 1.00144 1.85087 1.61123 1.21479 1.35710 0.94080 0.88152 0.91660 0.89343 0.85316 0.89358 0.89036 0.89718 0.96113 0.94899 0.92354 0.91093 0.90021 0.92511 0.91740 0.91133 0.92261 0.91248 0.92422 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.89 71.98 0.71 -2.87 16 2 C -0.03 -0.87 6.56 29.85 0.20 -0.68 16 3 C 0.20 7.89 7.57 88.29 0.67 8.56 16 4 N -0.50 -19.52 11.26 -291.07 -3.28 -22.80 16 5 C 0.06 2.24 7.16 41.83 0.30 2.54 16 6 C -0.07 -2.13 9.94 71.24 0.71 -1.42 16 7 C -0.13 -5.96 6.68 24.05 0.16 -5.80 16 8 C 0.60 26.86 7.55 86.46 0.65 27.52 16 9 O -0.56 -24.67 14.38 -4.31 -0.06 -24.73 16 10 N -0.58 -25.70 2.20 -830.81 -1.83 -27.53 16 11 C 0.26 12.70 3.70 85.63 0.32 13.02 16 12 C -0.53 -28.20 7.89 25.60 0.20 -28.00 16 13 H 0.04 2.18 7.81 -2.91 -0.02 2.16 16 14 C 0.04 1.83 5.46 84.65 0.46 2.29 16 15 N -0.91 -48.88 13.29 21.45 0.28 -48.59 16 16 Si 0.94 41.60 29.54 68.60 2.03 43.63 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.12 4.51 4.73 86.38 0.41 4.92 16 21 C -0.10 -3.25 3.09 -10.80 -0.03 -3.28 16 22 C -0.13 -3.12 9.19 71.98 0.66 -2.46 16 23 C -0.14 -4.34 8.36 71.98 0.60 -3.73 16 24 O -0.15 -6.95 6.62 -7.05 -0.05 -6.99 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.08 2.83 6.37 -2.38 -0.02 2.81 16 33 H 0.02 1.13 5.89 -2.39 -0.01 1.11 16 34 H 0.03 1.67 6.86 -2.39 -0.02 1.66 16 35 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 36 H 0.07 2.57 7.67 -2.38 -0.02 2.55 16 37 H 0.08 2.95 8.03 -2.39 -0.02 2.93 16 38 H 0.06 1.94 8.02 -2.38 -0.02 1.92 16 39 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.03 1.15 6.43 -2.39 -0.02 1.13 16 Total: -1.00 -62.11 359.46 4.10 -58.01 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.98 Total: 18.38 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.02 Total: 10.63 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -4.82 Total: -98.92 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.11 Total: -31.72 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -62.11 4.10 -58.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814640818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.547 kcal (2) G-P(sol) polarization free energy of solvation -62.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds