Wall clock time and date at job start Tue Mar 31 2020 06:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.53001 * 109.47308 * 239.99722 * 2 1 3 5 5 C 1.50706 * 109.47349 * 119.99611 * 2 1 3 6 6 N 1.30437 * 125.99038 * 357.93323 * 5 2 1 7 7 N 1.39922 * 108.91648 * 179.97438 * 6 5 2 8 8 H 0.97002 * 125.74418 * 179.97438 * 7 6 5 9 9 C 1.34217 * 108.51635 * 0.23986 * 7 6 5 10 10 C 1.38125 * 107.41046 * 359.61838 * 9 7 6 11 11 C 1.47285 * 126.43083 * 180.11125 * 10 9 7 12 12 O 1.21521 * 119.99857 * 185.80047 * 11 10 9 13 13 O 1.34747 * 119.99891 * 5.80185 * 11 10 9 14 14 C 1.45198 * 116.99905 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47292 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47483 * 300.00373 * 15 14 13 17 17 C 1.53008 * 109.46674 * 60.00329 * 15 14 13 18 18 C 1.50702 * 109.47477 * 179.97438 * 15 14 13 19 19 H 1.08003 * 119.99393 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00267 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00007 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00250 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47176 * 89.99800 * 22 20 18 24 24 H 1.48496 * 109.47309 * 209.99914 * 22 20 18 25 25 H 1.48499 * 109.47106 * 330.00303 * 22 20 18 26 26 H 1.09004 * 109.47016 * 300.00442 * 1 2 3 27 27 H 1.09002 * 109.47193 * 60.00036 * 1 2 3 28 28 H 1.08995 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47421 * 184.99821 * 3 2 1 30 30 H 1.09001 * 109.46909 * 304.99361 * 3 2 1 31 31 H 1.09001 * 109.47466 * 64.99773 * 3 2 1 32 32 H 1.09000 * 109.46752 * 294.84705 * 4 2 1 33 33 H 1.08999 * 109.47137 * 54.84580 * 4 2 1 34 34 H 1.08998 * 109.47013 * 174.84807 * 4 2 1 35 35 H 1.08003 * 126.29766 * 179.72707 * 9 7 6 36 36 H 1.08999 * 109.47357 * 300.00034 * 14 13 11 37 37 H 1.09004 * 109.47000 * 60.00319 * 14 13 11 38 38 H 1.09001 * 109.46822 * 59.99526 * 16 15 14 39 39 H 1.09000 * 109.47216 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.46753 * 300.00122 * 16 15 14 41 41 H 1.08999 * 109.47222 * 60.00124 * 17 15 14 42 42 H 1.08999 * 109.46724 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.46672 * 299.99933 * 17 15 14 44 44 H 0.97001 * 120.00507 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 7 1.2935 -1.2144 2.1799 7 7 2.1265 -1.7898 3.1458 8 1 1.8318 -2.2332 3.9567 9 6 3.4021 -1.6198 2.7645 10 6 3.3867 -0.9477 1.5580 11 6 4.5613 -0.5477 0.7646 12 8 4.4184 0.1336 -0.2315 13 8 5.7945 -0.9371 1.1432 14 6 6.9055 -0.5065 0.3135 15 6 8.2151 -1.0406 0.8974 16 6 8.3988 -0.4997 2.3168 17 6 8.1701 -2.5695 0.9360 18 6 9.3682 -0.5941 0.0359 19 1 9.1853 0.0104 -0.8401 20 6 10.6566 -0.9575 0.3661 21 7 10.8792 -1.6941 1.4326 22 14 12.0859 -0.4036 -0.7012 23 1 12.5933 0.9028 -0.2101 24 1 13.1730 -1.4131 -0.6357 25 1 11.6278 -0.2599 -2.1065 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1263 1.4438 -0.0895 30 1 1.6054 1.9815 -0.8419 31 1 1.7516 1.9299 0.9313 32 1 1.7540 -1.7721 -1.2041 33 1 1.6033 -0.2636 -2.1368 34 1 3.1261 -0.6421 -1.2965 35 1 4.2792 -1.9497 3.3014 36 1 6.7745 -0.8915 -0.6977 37 1 6.9379 0.5827 0.2863 38 1 7.5647 -0.8230 2.9396 39 1 9.3316 -0.8806 2.7328 40 1 8.4308 0.5895 2.2892 41 1 8.0392 -2.9548 -0.0751 42 1 9.1028 -2.9500 1.3524 43 1 7.3360 -2.8927 1.5589 44 1 11.7855 -1.9501 1.6648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816021550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:04 Heat of formation + Delta-G solvation = -27.086457 kcal Electronic energy + Delta-G solvation = -24631.289868 eV Core-core repulsion = 21164.221960 eV Total energy + Delta-G solvation = -3467.067907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60779 -39.44090 -37.07540 -36.13179 -34.70684 -31.37081 -31.08315 -30.53462 -27.11576 -27.04083 -25.81349 -25.62087 -25.12960 -23.14891 -22.72972 -20.41912 -18.81670 -18.28822 -18.22073 -16.75489 -15.82270 -15.74937 -15.56242 -14.96768 -14.91267 -14.63043 -14.09980 -13.80004 -13.38449 -13.01481 -12.96831 -12.64144 -12.10238 -12.04176 -11.80096 -11.67191 -11.44089 -11.18463 -11.15983 -11.11344 -10.91790 -10.83745 -10.72316 -10.53285 -10.37950 -10.16921 -9.80248 -9.69039 -9.61841 -9.37334 -9.28108 -8.87504 -8.75483 -8.37476 -6.02025 -4.13237 1.42416 2.06751 2.55115 3.28080 3.34282 3.35909 3.42721 3.47229 4.32014 4.40657 4.59445 4.96752 5.09589 5.15349 5.24710 5.39315 5.45195 5.65650 5.73359 5.79766 5.92724 5.99055 6.04186 6.11593 6.14992 6.18233 6.19041 6.40454 6.50397 6.55706 6.63745 6.79156 6.97554 6.98704 7.11927 7.12923 7.26369 7.43925 7.44761 7.62225 7.70385 8.05162 8.16593 8.36735 8.45127 8.86896 9.52358 10.99177 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026987 B = 0.003737 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.297302 B = 7491.719157 C = 8153.288304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 C -0.155 4.155 4 C -0.155 4.155 5 C 0.151 3.849 6 N -0.300 5.300 7 N -0.466 5.466 8 H 0.444 0.556 9 C 0.133 3.867 10 C -0.271 4.271 11 C 0.531 3.469 12 O -0.509 6.509 13 O -0.348 6.348 14 C 0.087 3.913 15 C 0.070 3.930 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.196 0.804 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.083 0.917 43 H 0.015 0.985 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.819 -0.053 2.807 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.015 3.985 3 C -0.212 4.212 4 C -0.213 4.213 5 C -0.018 4.018 6 N -0.121 5.121 7 N -0.170 5.170 8 H 0.288 0.712 9 C -0.020 4.020 10 C -0.284 4.284 11 C 0.377 3.623 12 O -0.401 6.401 13 O -0.264 6.264 14 C 0.014 3.986 15 C 0.069 3.931 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.102 0.898 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.841 -0.147 3.042 18.099 hybrid contribution 1.502 0.149 -0.333 1.546 sum -16.339 0.002 2.709 16.562 Atomic orbital electron populations 1.21822 0.93813 1.02011 1.01683 1.19008 0.95115 0.95174 0.89186 1.22178 1.05472 0.92792 1.00801 1.22171 1.05249 0.98766 0.95094 1.22438 0.89668 0.94633 0.95017 1.77141 1.16781 1.17828 1.00325 1.46130 1.04256 1.45738 1.20880 0.71151 1.23421 0.89155 0.94309 0.95111 1.19511 0.92444 1.16772 0.99676 1.19962 0.83131 0.76798 0.82449 1.90556 1.86180 1.36929 1.26465 1.86555 1.15011 1.69984 1.54807 1.23637 0.83318 0.98812 0.92804 1.18244 0.87727 0.93206 0.93888 1.21760 1.01241 0.98159 0.97438 1.21761 1.01021 0.97524 0.98301 1.20948 0.90526 1.33045 1.10373 0.92474 1.24846 0.98574 0.94759 0.95150 1.69825 1.20668 1.36556 1.25075 0.86554 0.81956 0.78371 0.80894 1.20662 1.21202 1.19871 0.92490 0.92331 0.92555 0.88295 0.92359 0.93660 0.93579 0.92266 0.88594 0.78702 0.92497 0.92512 0.96582 0.89837 0.95835 0.95830 0.89834 0.96566 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.96 37.16 0.30 -1.21 16 2 C 0.02 0.23 0.75 -155.66 -0.12 0.11 16 3 C -0.15 -2.05 8.27 37.16 0.31 -1.75 16 4 C -0.16 -2.08 8.21 37.16 0.31 -1.77 16 5 C 0.15 2.14 5.64 -82.00 -0.46 1.67 16 6 N -0.30 -3.90 11.93 33.91 0.40 -3.50 16 7 N -0.47 -4.66 7.28 30.86 0.22 -4.43 16 8 H 0.44 2.64 8.96 -182.73 -1.64 1.01 16 9 C 0.13 1.52 11.86 -16.55 -0.20 1.32 16 10 C -0.27 -4.02 5.96 -105.08 -0.63 -4.65 16 11 C 0.53 9.32 7.69 34.41 0.26 9.59 16 12 O -0.51 -9.45 9.79 -19.28 -0.19 -9.63 16 13 O -0.35 -6.67 8.71 -40.62 -0.35 -7.02 16 14 C 0.09 1.87 4.27 37.16 0.16 2.03 16 15 C 0.07 1.66 0.58 -155.65 -0.09 1.57 16 16 C -0.13 -2.99 8.11 37.16 0.30 -2.69 16 17 C -0.13 -3.00 8.11 37.16 0.30 -2.70 16 18 C -0.51 -13.40 8.01 -34.44 -0.28 -13.68 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 21 N -0.88 -23.60 9.35 55.43 0.52 -23.08 16 22 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.55 4.69 -51.93 -0.24 1.31 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.52 4.59 -51.93 -0.24 1.28 16 35 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.33 7.68 -51.93 -0.40 -0.07 16 39 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.02 0.33 7.68 -51.93 -0.40 -0.07 16 44 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -29.09 347.89 -7.26 -36.35 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.16 Total: 0.96 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 1.15 Total: -31.01 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.54 Total: -16.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.09 -7.26 -36.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816021550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.267 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds