Wall clock time and date at job start Tue Mar 31 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.53001 * 109.47308 * 239.99722 * 2 1 3 5 5 C 1.50706 * 109.47349 * 119.99611 * 2 1 3 6 6 N 1.30437 * 125.99038 * 357.93323 * 5 2 1 7 7 N 1.39922 * 108.91648 * 179.97438 * 6 5 2 8 8 H 0.97002 * 125.74418 * 179.97438 * 7 6 5 9 9 C 1.34217 * 108.51635 * 0.23986 * 7 6 5 10 10 C 1.38125 * 107.41046 * 359.61838 * 9 7 6 11 11 C 1.47285 * 126.43083 * 180.11125 * 10 9 7 12 12 O 1.21521 * 119.99857 * 185.80047 * 11 10 9 13 13 O 1.34747 * 119.99891 * 5.80185 * 11 10 9 14 14 C 1.45198 * 116.99905 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47292 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47483 * 300.00373 * 15 14 13 17 17 C 1.53008 * 109.46674 * 60.00329 * 15 14 13 18 18 C 1.50702 * 109.47477 * 179.97438 * 15 14 13 19 19 H 1.08003 * 119.99393 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00267 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00007 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00250 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47176 * 89.99800 * 22 20 18 24 24 H 1.48496 * 109.47309 * 209.99914 * 22 20 18 25 25 H 1.48499 * 109.47106 * 330.00303 * 22 20 18 26 26 H 1.09004 * 109.47016 * 300.00442 * 1 2 3 27 27 H 1.09002 * 109.47193 * 60.00036 * 1 2 3 28 28 H 1.08995 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47421 * 184.99821 * 3 2 1 30 30 H 1.09001 * 109.46909 * 304.99361 * 3 2 1 31 31 H 1.09001 * 109.47466 * 64.99773 * 3 2 1 32 32 H 1.09000 * 109.46752 * 294.84705 * 4 2 1 33 33 H 1.08999 * 109.47137 * 54.84580 * 4 2 1 34 34 H 1.08998 * 109.47013 * 174.84807 * 4 2 1 35 35 H 1.08003 * 126.29766 * 179.72707 * 9 7 6 36 36 H 1.08999 * 109.47357 * 300.00034 * 14 13 11 37 37 H 1.09004 * 109.47000 * 60.00319 * 14 13 11 38 38 H 1.09001 * 109.46822 * 59.99526 * 16 15 14 39 39 H 1.09000 * 109.47216 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.46753 * 300.00122 * 16 15 14 41 41 H 1.08999 * 109.47222 * 60.00124 * 17 15 14 42 42 H 1.08999 * 109.46724 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.46672 * 299.99933 * 17 15 14 44 44 H 0.97001 * 120.00507 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 7 1.2935 -1.2144 2.1799 7 7 2.1265 -1.7898 3.1458 8 1 1.8318 -2.2332 3.9567 9 6 3.4021 -1.6198 2.7645 10 6 3.3867 -0.9477 1.5580 11 6 4.5613 -0.5477 0.7646 12 8 4.4184 0.1336 -0.2315 13 8 5.7945 -0.9371 1.1432 14 6 6.9055 -0.5065 0.3135 15 6 8.2151 -1.0406 0.8974 16 6 8.3988 -0.4997 2.3168 17 6 8.1701 -2.5695 0.9360 18 6 9.3682 -0.5941 0.0359 19 1 9.1853 0.0104 -0.8401 20 6 10.6566 -0.9575 0.3661 21 7 10.8792 -1.6941 1.4326 22 14 12.0859 -0.4036 -0.7012 23 1 12.5933 0.9028 -0.2101 24 1 13.1730 -1.4131 -0.6357 25 1 11.6278 -0.2599 -2.1065 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1263 1.4438 -0.0895 30 1 1.6054 1.9815 -0.8419 31 1 1.7516 1.9299 0.9313 32 1 1.7540 -1.7721 -1.2041 33 1 1.6033 -0.2636 -2.1368 34 1 3.1261 -0.6421 -1.2965 35 1 4.2792 -1.9497 3.3014 36 1 6.7745 -0.8915 -0.6977 37 1 6.9379 0.5827 0.2863 38 1 7.5647 -0.8230 2.9396 39 1 9.3316 -0.8806 2.7328 40 1 8.4308 0.5895 2.2892 41 1 8.0392 -2.9548 -0.0751 42 1 9.1028 -2.9500 1.3524 43 1 7.3360 -2.8927 1.5589 44 1 11.7855 -1.9501 1.6648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816021550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:03 Heat of formation + Delta-G solvation = -42.417845 kcal Electronic energy + Delta-G solvation = -24631.954686 eV Core-core repulsion = 21164.221960 eV Total energy + Delta-G solvation = -3467.732726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62364 -40.84224 -38.38108 -37.52101 -36.33278 -33.24864 -32.08444 -31.65110 -28.08902 -28.05709 -27.52285 -27.50976 -27.04519 -24.39885 -23.73427 -21.63687 -20.62250 -19.39029 -19.20509 -18.19463 -17.62485 -17.24736 -16.98035 -16.46989 -15.93581 -15.89565 -15.14856 -15.02544 -14.89896 -14.66846 -14.30504 -14.05584 -13.45354 -13.39017 -13.06121 -13.04138 -12.92908 -12.82823 -12.59847 -12.47805 -12.37569 -12.15556 -12.10614 -12.08273 -11.90430 -11.63754 -11.53767 -11.20450 -11.09992 -10.88096 -10.68111 -10.57463 -10.36266 -9.92435 -8.01290 -6.18465 0.39532 0.98310 1.44945 1.47155 1.55286 1.65760 2.07358 2.21063 2.49289 3.22416 3.33376 3.63525 4.07289 4.11472 4.12990 4.33572 4.36615 4.37763 4.45290 4.51332 4.71894 4.81100 4.83414 4.93850 4.95411 5.02504 5.05847 5.11692 5.14651 5.20021 5.25959 5.28838 5.36656 5.45583 5.51465 5.54688 5.67575 5.69805 5.95645 6.14339 6.21595 6.23556 6.42268 6.48149 6.85433 7.05485 7.49347 8.98049 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026987 B = 0.003737 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.297302 B = 7491.719157 C = 8153.288304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.013 3.987 3 C -0.150 4.150 4 C -0.151 4.151 5 C 0.142 3.858 6 N -0.309 5.309 7 N -0.444 5.444 8 H 0.463 0.537 9 C 0.157 3.843 10 C -0.307 4.307 11 C 0.526 3.474 12 O -0.524 6.524 13 O -0.349 6.349 14 C 0.102 3.898 15 C 0.061 3.939 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.532 4.532 19 H 0.048 0.952 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.949 3.051 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.061 0.939 43 H 0.035 0.965 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 -0.352 3.535 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 C -0.208 4.208 4 C -0.209 4.209 5 C -0.026 4.026 6 N -0.131 5.131 7 N -0.150 5.150 8 H 0.312 0.688 9 C 0.002 3.998 10 C -0.320 4.320 11 C 0.374 3.626 12 O -0.417 6.417 13 O -0.266 6.266 14 C 0.028 3.972 15 C 0.061 3.939 16 C -0.175 4.175 17 C -0.175 4.175 18 C -0.570 4.570 19 H 0.066 0.934 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.775 3.225 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.241 0.759 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.207 -0.457 3.794 19.584 hybrid contribution 1.840 0.216 -0.503 1.920 sum -17.367 -0.240 3.291 17.678 Atomic orbital electron populations 1.21753 0.92096 1.02209 1.02472 1.19078 0.96440 0.94686 0.88758 1.22093 1.03757 0.93430 1.01500 1.22092 1.03520 0.99097 0.96143 1.22593 0.89506 0.94920 0.95595 1.77104 1.17241 1.18101 1.00627 1.46160 1.03593 1.44370 1.20845 0.68757 1.23761 0.90261 0.92068 0.93717 1.19485 0.91555 1.19608 1.01305 1.20418 0.83008 0.76511 0.82684 1.90575 1.86200 1.37606 1.27288 1.86521 1.15274 1.70366 1.54392 1.23175 0.83531 0.98009 0.92454 1.18262 0.88256 0.93499 0.93906 1.21605 1.00888 0.97637 0.97362 1.21605 1.00589 0.97168 0.98119 1.21226 0.91859 1.33299 1.10652 0.93354 1.25460 1.00514 0.94897 0.96199 1.69932 1.21034 1.36909 1.25847 0.85706 0.79385 0.78002 0.79415 1.20372 1.20800 1.19855 0.92489 0.90751 0.92604 0.90882 0.90894 0.93514 0.93527 0.90791 0.91213 0.75912 0.93411 0.93341 0.94471 0.92010 0.96351 0.96404 0.91988 0.94580 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 7.96 71.98 0.57 -2.02 16 2 C 0.01 0.31 0.75 -52.93 -0.04 0.28 16 3 C -0.15 -3.89 8.27 71.98 0.60 -3.29 16 4 C -0.15 -3.95 8.21 71.98 0.59 -3.36 16 5 C 0.14 3.83 5.64 43.53 0.25 4.07 16 6 N -0.31 -7.37 11.93 -46.64 -0.56 -7.93 16 7 N -0.44 -7.53 7.28 -56.29 -0.41 -7.94 16 8 H 0.46 3.87 8.96 -213.43 -1.91 1.96 16 9 C 0.16 3.14 11.86 84.30 1.00 4.14 16 10 C -0.31 -8.69 5.96 -20.16 -0.12 -8.81 16 11 C 0.53 18.37 7.69 70.20 0.54 18.91 16 12 O -0.52 -19.81 9.79 19.77 0.19 -19.62 16 13 O -0.35 -13.17 8.71 -56.58 -0.49 -13.67 16 14 C 0.10 4.40 4.27 71.98 0.31 4.71 16 15 C 0.06 2.91 0.58 -52.92 -0.03 2.88 16 16 C -0.12 -5.42 8.11 71.98 0.58 -4.84 16 17 C -0.12 -5.44 8.11 71.98 0.58 -4.86 16 18 C -0.53 -28.20 8.01 25.60 0.21 -27.99 16 19 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 20 C 0.03 1.54 5.15 84.65 0.44 1.98 16 21 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 22 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 2.32 4.69 -2.38 -0.01 2.31 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.23 4.59 -2.39 -0.01 2.22 16 35 H 0.22 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 39 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 43 H 0.04 1.48 7.68 -2.39 -0.02 1.46 16 44 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -62.29 347.89 5.52 -56.77 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.91 Total: 14.26 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 5.47 Total: -18.20 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.77 Total: -63.83 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.30 Total: -33.28 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -62.29 5.52 -56.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816021550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.352 kcal (2) G-P(sol) polarization free energy of solvation -62.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds