Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46837 * 2 1 4 4 C 1.50702 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.35311 * 126.66616 * 90.26001 * 4 3 2 6 6 C 1.42266 * 103.92095 * 180.11222 * 5 4 3 7 7 C 1.48334 * 126.93670 * 179.90518 * 6 5 4 8 8 O 1.21494 * 120.00451 * 354.44476 * 7 6 5 9 9 N 1.34778 * 119.99931 * 174.43563 * 7 6 5 10 10 C 1.46504 * 119.99998 * 4.61792 * 9 7 6 11 11 C 1.50699 * 109.46893 * 84.60592 * 10 9 7 12 12 H 1.08001 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99828 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00414 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47246 * 90.00101 * 15 13 11 17 17 H 1.48496 * 109.47604 * 210.00627 * 15 13 11 18 18 H 1.48501 * 109.46687 * 330.00507 * 15 13 11 19 19 C 1.46501 * 120.00115 * 184.61832 * 9 7 6 20 20 C 1.52997 * 109.47116 * 84.75112 * 19 9 7 21 21 C 1.52997 * 109.47473 * 64.99931 * 20 19 9 22 22 C 1.53005 * 109.47158 * 185.00100 * 20 19 9 23 23 N 1.30987 * 106.12357 * 359.65178 * 6 5 4 24 24 O 1.20901 * 111.43943 * 0.22097 * 23 6 5 25 25 H 1.09001 * 109.47216 * 299.99928 * 1 2 3 26 26 H 1.09004 * 109.47470 * 59.99930 * 1 2 3 27 27 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47237 * 240.00595 * 2 1 3 29 29 H 1.08988 * 109.47140 * 120.00020 * 2 1 3 30 30 H 1.09001 * 109.47159 * 60.00036 * 3 2 1 31 31 H 1.09004 * 109.47148 * 300.00268 * 3 2 1 32 32 H 1.08006 * 128.03969 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.47069 * 204.60878 * 10 9 7 34 34 H 1.09000 * 109.46904 * 324.60934 * 10 9 7 35 35 H 0.97009 * 119.99973 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47209 * 204.74826 * 19 9 7 37 37 H 1.08997 * 109.46816 * 324.74916 * 19 9 7 38 38 H 1.09003 * 109.47266 * 304.99592 * 20 19 9 39 39 H 1.08994 * 109.47029 * 60.00150 * 21 20 19 40 40 H 1.09002 * 109.47407 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47121 * 300.00223 * 21 20 19 42 42 H 1.09001 * 109.46853 * 59.99588 * 22 20 19 43 43 H 1.08999 * 109.46939 * 179.97438 * 22 20 19 44 44 H 1.08998 * 109.46989 * 300.00180 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3545 1.4478 -1.0863 6 6 5.6668 1.4426 -0.5369 7 6 6.9470 1.4431 -1.2862 8 8 6.9421 1.3465 -2.4973 9 7 8.1156 1.5509 -0.6236 10 6 8.1284 1.5657 0.8414 11 6 8.1223 0.1501 1.3580 12 1 8.1097 -0.6778 0.6646 13 6 8.1317 -0.0882 2.7160 14 7 8.1259 -1.3236 3.1669 15 14 8.1529 1.3437 3.9154 16 1 6.7585 1.7340 4.2450 17 1 8.8602 0.9392 5.1569 18 1 8.8567 2.4963 3.2978 19 6 9.3731 1.6533 -1.3681 20 6 9.6197 3.1131 -1.7543 21 6 9.8296 3.9470 -0.4889 22 6 10.8661 3.2035 -2.6372 23 7 5.5163 1.4428 0.7643 24 8 4.3477 1.4429 1.0740 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 4.0692 1.4530 -2.1280 33 1 9.0253 2.0765 1.1917 34 1 7.2454 2.0898 1.2071 35 1 8.1329 -1.4912 4.1224 36 1 10.1942 1.2987 -0.7451 37 1 9.3120 1.0442 -2.2699 38 1 8.7580 3.4946 -2.3021 39 1 10.6913 3.5656 0.0588 40 1 10.0057 4.9869 -0.7640 41 1 8.9417 3.8826 0.1401 42 1 10.7166 2.6094 -3.5387 43 1 11.0415 4.2434 -2.9127 44 1 11.7278 2.8220 -2.0895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = 13.775279 kcal Electronic energy + Delta-G solvation = -24603.829167 eV Core-core repulsion = 21138.533157 eV Total energy + Delta-G solvation = -3465.296009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.53189 -39.28001 -36.24100 -35.64706 -34.27182 -33.15848 -32.24104 -31.32265 -28.23163 -26.95684 -26.87707 -26.34390 -23.57992 -22.58779 -22.11656 -21.39387 -20.09319 -18.36089 -17.31142 -16.94656 -16.79986 -16.20548 -15.62636 -15.21216 -14.68209 -14.55841 -14.19134 -13.85107 -13.52256 -13.35167 -13.24341 -13.03807 -12.60009 -12.51752 -12.30191 -12.16085 -11.93925 -11.63317 -11.48440 -11.43449 -11.15690 -11.00355 -10.90444 -10.74056 -10.57295 -10.42182 -10.18549 -10.13828 -9.89163 -9.59681 -9.45151 -9.02109 -8.57233 -7.79563 -6.10353 -4.09045 1.76145 2.10701 3.27464 3.32508 3.34808 3.36513 3.62427 3.82529 4.38640 4.58239 4.69233 4.89515 4.92614 5.12060 5.19303 5.21236 5.23026 5.32036 5.36489 5.49548 5.54642 5.63772 5.68086 5.76312 5.80009 5.88452 5.90699 5.96082 6.05716 6.08677 6.16273 6.18054 6.23092 6.27903 6.32278 6.42593 6.59730 6.60554 6.90220 7.33144 7.55713 8.03454 8.43162 8.59487 8.81664 8.93214 9.50188 11.02870 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.005980 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.539497 B = 4681.025807 C = 6352.066237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.034 4.034 4 C -0.054 4.054 5 C -0.184 4.184 6 C -0.026 4.026 7 C 0.598 3.402 8 O -0.557 6.557 9 N -0.572 5.572 10 C 0.197 3.803 11 C -0.524 4.524 12 H 0.072 0.928 13 C 0.082 3.918 14 N -0.896 5.896 15 Si 0.869 3.131 16 H -0.269 1.269 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.125 3.875 20 C -0.112 4.112 21 C -0.147 4.147 22 C -0.141 4.141 23 N -0.276 5.276 24 O 0.117 5.883 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.172 0.828 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 8.589 -6.701 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.072 4.072 4 C -0.117 4.117 5 C -0.206 4.206 6 C -0.185 4.185 7 C 0.384 3.616 8 O -0.436 6.436 9 N -0.301 5.301 10 C 0.076 3.924 11 C -0.562 4.562 12 H 0.090 0.910 13 C -0.121 4.121 14 N -0.534 5.534 15 Si 0.696 3.304 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.002 3.998 20 C -0.132 4.132 21 C -0.205 4.205 22 C -0.199 4.199 23 N 0.025 4.975 24 O 0.039 5.961 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.189 0.811 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.643 8.425 -6.145 12.929 hybrid contribution -0.234 0.452 0.148 0.530 sum -7.877 8.877 -5.997 13.297 Atomic orbital electron populations 1.21761 0.95198 1.01982 1.01851 1.21577 0.95924 0.95399 1.03452 1.20138 0.84040 0.98670 1.04329 1.24359 0.95933 1.05141 0.86241 1.22272 0.90139 1.07411 1.00818 1.23360 0.96284 1.08677 0.90134 1.16892 0.82028 0.76928 0.85725 1.90680 1.87045 1.52719 1.13148 1.47824 1.04704 1.68521 1.09082 1.20283 0.98370 0.99144 0.74628 1.21200 1.51573 0.90777 0.92680 0.90973 1.24744 0.94138 0.95331 0.97897 1.69897 1.50349 1.19038 1.14110 0.86950 0.79071 0.83275 0.81095 1.19468 1.21210 1.19140 1.21474 0.85992 0.95384 0.96976 1.21507 0.98553 0.96426 0.96676 1.21892 1.02216 0.98801 0.97549 1.21741 0.97356 1.01348 0.99429 1.74760 0.94859 1.12686 1.15212 1.84914 1.11895 1.65640 1.33605 0.92514 0.92632 0.92435 0.91295 0.91053 0.89521 0.88856 0.81069 0.94678 0.92924 0.92586 0.89844 0.90631 0.91154 0.92549 0.93311 0.92301 0.92606 0.92854 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.24 5.92 -26.73 -0.16 -1.40 16 3 C -0.03 -0.34 5.78 -27.88 -0.16 -0.50 16 4 C -0.05 -0.81 6.73 -35.35 -0.24 -1.05 16 5 C -0.18 -3.08 10.93 -39.08 -0.43 -3.51 16 6 C -0.03 -0.54 6.88 -82.53 -0.57 -1.11 16 7 C 0.60 13.37 7.62 -12.11 -0.09 13.28 16 8 O -0.56 -12.83 16.59 5.37 0.09 -12.74 16 9 N -0.57 -12.51 2.21 -175.99 -0.39 -12.90 16 10 C 0.20 4.68 2.76 -5.19 -0.01 4.67 16 11 C -0.52 -14.66 9.22 -34.44 -0.32 -14.98 16 12 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 13 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 14 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 15 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 C 0.12 2.32 4.80 -4.04 -0.02 2.30 16 20 C -0.11 -1.74 3.09 -90.62 -0.28 -2.02 16 21 C -0.15 -2.23 8.34 37.16 0.31 -1.92 16 22 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 23 N -0.28 -6.07 8.13 33.29 0.27 -5.80 16 24 O 0.12 2.20 11.18 17.25 0.19 2.39 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.80 8.14 -51.94 -0.42 0.37 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.17 2.46 8.06 -52.48 -0.42 2.03 16 33 H 0.04 0.82 5.88 -51.93 -0.31 0.51 16 34 H 0.05 1.28 4.66 -51.93 -0.24 1.04 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 37 H 0.08 1.42 7.52 -51.93 -0.39 1.03 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.01 6.40 -51.93 -0.33 0.67 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -32.57 359.69 -6.86 -39.43 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.20 Total: 0.26 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.35 Total: -6.22 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.66 Total: -45.14 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.28 Total: -10.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.57 -6.86 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.205 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds