Wall clock time and date at job start Tue Mar 31 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46837 * 2 1 4 4 C 1.50702 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.35311 * 126.66616 * 90.26001 * 4 3 2 6 6 C 1.42266 * 103.92095 * 180.11222 * 5 4 3 7 7 C 1.48334 * 126.93670 * 179.90518 * 6 5 4 8 8 O 1.21494 * 120.00451 * 354.44476 * 7 6 5 9 9 N 1.34778 * 119.99931 * 174.43563 * 7 6 5 10 10 C 1.46504 * 119.99998 * 4.61792 * 9 7 6 11 11 C 1.50699 * 109.46893 * 84.60592 * 10 9 7 12 12 H 1.08001 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99828 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00414 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47246 * 90.00101 * 15 13 11 17 17 H 1.48496 * 109.47604 * 210.00627 * 15 13 11 18 18 H 1.48501 * 109.46687 * 330.00507 * 15 13 11 19 19 C 1.46501 * 120.00115 * 184.61832 * 9 7 6 20 20 C 1.52997 * 109.47116 * 84.75112 * 19 9 7 21 21 C 1.52997 * 109.47473 * 64.99931 * 20 19 9 22 22 C 1.53005 * 109.47158 * 185.00100 * 20 19 9 23 23 N 1.30987 * 106.12357 * 359.65178 * 6 5 4 24 24 O 1.20901 * 111.43943 * 0.22097 * 23 6 5 25 25 H 1.09001 * 109.47216 * 299.99928 * 1 2 3 26 26 H 1.09004 * 109.47470 * 59.99930 * 1 2 3 27 27 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47237 * 240.00595 * 2 1 3 29 29 H 1.08988 * 109.47140 * 120.00020 * 2 1 3 30 30 H 1.09001 * 109.47159 * 60.00036 * 3 2 1 31 31 H 1.09004 * 109.47148 * 300.00268 * 3 2 1 32 32 H 1.08006 * 128.03969 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.47069 * 204.60878 * 10 9 7 34 34 H 1.09000 * 109.46904 * 324.60934 * 10 9 7 35 35 H 0.97009 * 119.99973 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47209 * 204.74826 * 19 9 7 37 37 H 1.08997 * 109.46816 * 324.74916 * 19 9 7 38 38 H 1.09003 * 109.47266 * 304.99592 * 20 19 9 39 39 H 1.08994 * 109.47029 * 60.00150 * 21 20 19 40 40 H 1.09002 * 109.47407 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47121 * 300.00223 * 21 20 19 42 42 H 1.09001 * 109.46853 * 59.99588 * 22 20 19 43 43 H 1.08999 * 109.46939 * 179.97438 * 22 20 19 44 44 H 1.08998 * 109.46989 * 300.00180 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3545 1.4478 -1.0863 6 6 5.6668 1.4426 -0.5369 7 6 6.9470 1.4431 -1.2862 8 8 6.9421 1.3465 -2.4973 9 7 8.1156 1.5509 -0.6236 10 6 8.1284 1.5657 0.8414 11 6 8.1223 0.1501 1.3580 12 1 8.1097 -0.6778 0.6646 13 6 8.1317 -0.0882 2.7160 14 7 8.1259 -1.3236 3.1669 15 14 8.1529 1.3437 3.9154 16 1 6.7585 1.7340 4.2450 17 1 8.8602 0.9392 5.1569 18 1 8.8567 2.4963 3.2978 19 6 9.3731 1.6533 -1.3681 20 6 9.6197 3.1131 -1.7543 21 6 9.8296 3.9470 -0.4889 22 6 10.8661 3.2035 -2.6372 23 7 5.5163 1.4428 0.7643 24 8 4.3477 1.4429 1.0740 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 4.0692 1.4530 -2.1280 33 1 9.0253 2.0765 1.1917 34 1 7.2454 2.0898 1.2071 35 1 8.1329 -1.4912 4.1224 36 1 10.1942 1.2987 -0.7451 37 1 9.3120 1.0442 -2.2699 38 1 8.7580 3.4946 -2.3021 39 1 10.6913 3.5656 0.0588 40 1 10.0057 4.9869 -0.7640 41 1 8.9417 3.8826 0.1401 42 1 10.7166 2.6094 -3.5387 43 1 11.0415 4.2434 -2.9127 44 1 11.7278 2.8220 -2.0895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822809288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:19 Heat of formation + Delta-G solvation = -5.097860 kcal Electronic energy + Delta-G solvation = -24604.647567 eV Core-core repulsion = 21138.533157 eV Total energy + Delta-G solvation = -3466.114410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.03294 -40.97550 -37.79011 -36.56148 -35.91747 -34.71694 -34.20720 -32.51460 -30.17008 -28.06498 -27.92683 -27.84481 -25.23770 -24.31652 -23.45033 -22.46656 -21.38792 -19.88031 -19.21386 -18.67112 -18.37872 -17.82358 -17.19448 -16.44026 -16.00712 -15.98378 -15.89874 -15.19508 -14.86924 -14.75239 -14.53523 -14.30652 -14.11640 -14.01468 -13.78114 -13.23922 -13.13668 -13.02862 -12.72696 -12.59080 -12.48685 -12.33564 -12.15223 -12.11991 -11.93790 -11.83338 -11.70957 -11.61710 -11.51452 -11.39790 -11.24104 -10.77513 -10.31867 -9.57078 -8.32059 -6.36068 0.25050 0.73426 1.32303 1.36982 1.42812 1.91157 2.11916 2.25108 2.31966 3.03294 3.04598 3.48131 3.84125 3.93584 3.99244 4.09172 4.12951 4.13562 4.17031 4.33257 4.49973 4.58266 4.62247 4.68648 4.77774 4.79947 4.83258 4.85297 4.91832 4.99270 4.99935 5.01762 5.02770 5.17257 5.30436 5.33469 5.34701 5.37042 5.44511 5.49532 5.61986 6.08596 6.39237 6.62273 6.94821 7.26939 7.28692 8.85160 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.005980 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.539497 B = 4681.025807 C = 6352.066237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.030 4.030 4 C -0.030 4.030 5 C -0.191 4.191 6 C -0.056 4.056 7 C 0.589 3.411 8 O -0.571 6.571 9 N -0.578 5.578 10 C 0.212 3.788 11 C -0.521 4.521 12 H 0.019 0.981 13 C 0.028 3.972 14 N -0.944 5.944 15 Si 0.932 3.068 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.242 1.242 19 C 0.118 3.882 20 C -0.103 4.103 21 C -0.145 4.145 22 C -0.135 4.135 23 N -0.317 5.317 24 O 0.112 5.888 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.195 0.805 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 11.100 -6.812 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.068 4.068 4 C -0.092 4.092 5 C -0.213 4.213 6 C -0.213 4.213 7 C 0.376 3.624 8 O -0.452 6.452 9 N -0.306 5.306 10 C 0.090 3.910 11 C -0.560 4.560 12 H 0.037 0.963 13 C -0.170 4.170 14 N -0.585 5.585 15 Si 0.755 3.245 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.165 1.165 19 C -0.004 4.004 20 C -0.123 4.123 21 C -0.202 4.202 22 C -0.192 4.192 23 N -0.017 5.017 24 O 0.035 5.965 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.212 0.788 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.715 10.949 -6.280 15.338 hybrid contribution 0.006 -0.443 0.096 0.453 sum -8.708 10.506 -6.184 14.981 Atomic orbital electron populations 1.21725 0.93021 1.02450 1.03064 1.21572 0.97752 0.94925 1.02179 1.20478 0.80086 0.99301 1.06955 1.25236 0.97685 1.01859 0.84458 1.22571 0.88486 1.07847 1.02400 1.23545 0.97219 1.09999 0.90552 1.17213 0.82728 0.76595 0.85844 1.90644 1.87428 1.53528 1.13590 1.47898 1.05811 1.68400 1.08522 1.19997 0.98831 0.96368 0.75801 1.21259 1.51159 0.91444 0.92095 0.96273 1.25588 0.93565 0.98092 0.99772 1.70047 1.52074 1.21624 1.14721 0.85942 0.79616 0.80339 0.78613 1.18902 1.20549 1.16542 1.21712 0.84703 0.97807 0.96219 1.21427 0.99585 0.93852 0.97438 1.21872 1.01265 1.00286 0.96804 1.21706 0.95867 1.02854 0.98817 1.74695 0.96502 1.14606 1.15855 1.84839 1.11536 1.65246 1.34910 0.91624 0.91078 0.92435 0.92048 0.93035 0.87473 0.85594 0.78808 0.93521 0.92585 0.92376 0.89931 0.91462 0.92513 0.92079 0.90749 0.94561 0.92539 0.90745 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.13 -2.25 5.92 30.60 0.18 -2.07 16 3 C -0.03 -0.52 5.78 29.85 0.17 -0.35 16 4 C -0.03 -0.85 6.73 25.01 0.17 -0.68 16 5 C -0.19 -6.25 10.93 22.60 0.25 -6.00 16 6 C -0.06 -2.38 6.88 42.96 0.30 -2.09 16 7 C 0.59 27.09 7.62 86.93 0.66 27.75 16 8 O -0.57 -26.93 16.59 -3.70 -0.06 -26.99 16 9 N -0.58 -25.90 2.21 -829.02 -1.83 -27.73 16 10 C 0.21 10.22 2.76 85.63 0.24 10.45 16 11 C -0.52 -30.24 9.22 25.60 0.24 -30.01 16 12 H 0.02 1.28 8.06 -2.91 -0.02 1.25 16 13 C 0.03 1.65 5.47 84.65 0.46 2.11 16 14 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 15 Si 0.93 43.73 27.47 68.60 1.88 45.61 16 16 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 19 C 0.12 4.43 4.80 86.38 0.42 4.85 16 20 C -0.10 -3.13 3.09 -10.79 -0.03 -3.16 16 21 C -0.15 -4.14 8.34 71.98 0.60 -3.54 16 22 C -0.13 -3.10 9.19 71.98 0.66 -2.44 16 23 N -0.32 -14.15 8.13 -49.52 -0.40 -14.55 16 24 O 0.11 4.21 11.18 71.89 0.80 5.01 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.19 5.28 8.06 -2.91 -0.02 5.25 16 33 H 0.05 2.14 5.88 -2.39 -0.01 2.13 16 34 H 0.06 2.74 4.66 -2.39 -0.01 2.73 16 35 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 36 H 0.08 3.07 8.03 -2.39 -0.02 3.05 16 37 H 0.07 2.61 7.52 -2.39 -0.02 2.59 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.18 6.40 -2.39 -0.02 1.17 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -74.16 359.69 6.63 -67.53 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.92 Total: 16.32 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.02 Total: -6.25 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -1.93 Total: -101.23 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.74 Total: -21.98 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -74.16 6.63 -67.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.430 kcal (2) G-P(sol) polarization free energy of solvation -74.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds