Wall clock time and date at job start Tue Mar 31 2020 07:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46857 * 2 1 4 4 C 1.52994 * 109.47155 * 239.99784 * 2 1 3 5 5 C 1.52995 * 109.46800 * 119.99890 * 2 1 3 6 6 N 1.46905 * 109.47514 * 82.43229 * 5 2 1 7 7 C 1.46899 * 110.99634 * 80.26745 * 6 5 2 8 8 C 1.50693 * 109.47342 * 63.02733 * 7 6 5 9 9 H 1.08002 * 119.99846 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99555 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00120 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47367 * 89.99789 * 12 10 8 14 14 H 1.48503 * 109.46973 * 210.00062 * 12 10 8 15 15 H 1.48504 * 109.47232 * 329.99597 * 12 10 8 16 16 C 1.46902 * 110.99716 * 316.31625 * 6 5 2 17 17 C 1.50701 * 109.47073 * 280.09658 * 16 6 5 18 18 C 1.35491 * 125.50051 * 269.60393 * 17 16 6 19 19 C 1.39802 * 107.83871 * 180.02562 * 18 17 16 20 20 C 1.37989 * 106.96828 * 359.74027 * 19 18 17 21 21 C 1.46495 * 126.26292 * 180.25640 * 20 19 18 22 22 O 1.21612 * 120.00083 * 0.18897 * 21 20 19 23 23 O 1.34891 * 119.99852 * 180.18937 * 21 20 19 24 24 N 1.34956 * 125.51239 * 89.62948 * 17 16 6 25 25 H 0.97002 * 125.63187 * 359.97438 * 24 17 16 26 26 H 1.08996 * 109.47354 * 306.46594 * 1 2 3 27 27 H 1.09004 * 109.46944 * 66.46640 * 1 2 3 28 28 H 1.09002 * 109.46616 * 186.46389 * 1 2 3 29 29 H 1.08998 * 109.46940 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47109 * 299.99755 * 3 2 1 31 31 H 1.09002 * 109.47548 * 59.99896 * 3 2 1 32 32 H 1.09001 * 109.47225 * 287.33062 * 4 2 1 33 33 H 1.09002 * 109.47038 * 47.33013 * 4 2 1 34 34 H 1.09001 * 109.47298 * 167.32760 * 4 2 1 35 35 H 1.09000 * 109.47366 * 322.42465 * 5 2 1 36 36 H 1.09005 * 109.46815 * 202.43238 * 5 2 1 37 37 H 1.08998 * 109.46605 * 183.02281 * 7 6 5 38 38 H 1.08998 * 109.47411 * 303.01809 * 7 6 5 39 39 H 0.97005 * 119.99911 * 180.02562 * 11 10 8 40 40 H 1.08993 * 109.47272 * 160.09086 * 16 6 5 41 41 H 1.09003 * 109.47123 * 40.08899 * 16 6 5 42 42 H 1.07996 * 126.08115 * 0.05593 * 18 17 16 43 43 H 1.08000 * 126.51015 * 180.02562 * 19 18 17 44 44 H 0.96707 * 117.00032 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 2.0313 -2.1715 1.0154 7 6 3.2090 -2.5870 0.2420 8 6 4.4580 -2.2951 1.0329 9 1 4.3843 -1.8453 2.0121 10 6 5.6949 -2.6020 0.5066 11 7 5.7846 -3.1501 -0.6855 12 14 7.2431 -2.2394 1.4868 13 1 7.5844 -3.4157 2.3264 14 1 8.3637 -1.9546 0.5548 15 1 7.0122 -1.0594 2.3584 16 6 0.7901 -2.5899 0.3501 17 6 -0.3153 -2.6944 1.3690 18 6 -0.6353 -3.8079 2.0715 19 6 -1.7118 -3.4931 2.9061 20 6 -2.0176 -2.1658 2.6857 21 6 -3.0773 -1.3995 3.3460 22 8 -3.7843 -1.9328 4.1794 23 8 -3.2688 -0.1023 3.0294 24 7 -1.1468 -1.6941 1.7289 25 1 -1.1309 -0.7911 1.3751 26 1 -0.3634 0.6108 0.8264 27 1 -0.3633 0.4103 -0.9422 28 1 -0.3633 -1.0212 0.1157 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.8726 -1.7931 -1.1437 33 1 1.5045 -0.3543 -2.1247 34 1 3.1065 -0.5302 -1.3691 35 1 1.3932 -0.4855 2.0943 36 1 3.0567 -0.3945 1.4678 37 1 3.1504 -3.6560 0.0370 38 1 3.2381 -2.0378 -0.6991 39 1 6.6547 -3.3664 -1.0556 40 1 0.9408 -3.5601 -0.1232 41 1 0.5180 -1.8546 -0.4070 42 1 -0.1456 -4.7678 1.9997 43 1 -2.2065 -4.1607 3.5960 44 1 -3.9805 0.3619 3.4913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833430066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:31 Heat of formation + Delta-G solvation = 27.516250 kcal Electronic energy + Delta-G solvation = -25068.030589 eV Core-core repulsion = 21603.330433 eV Total energy + Delta-G solvation = -3464.700156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73849 -39.94054 -39.04682 -36.14918 -34.17095 -32.57101 -31.43086 -30.45679 -27.83962 -27.69357 -26.75633 -26.12199 -24.22000 -22.75215 -20.78055 -20.45600 -19.86426 -18.94464 -18.20065 -17.44562 -16.50731 -15.92713 -15.72698 -15.13390 -14.77342 -14.53746 -14.18409 -13.81344 -13.64565 -13.42933 -13.29945 -12.80275 -12.71938 -12.48188 -12.17061 -12.04727 -11.70133 -11.46604 -11.33656 -11.27388 -11.18033 -10.94240 -10.84076 -10.76776 -10.68459 -10.37594 -10.12121 -9.92230 -9.82213 -9.19653 -8.85848 -8.46048 -8.02185 -7.11720 -6.06073 -4.05447 1.27922 2.78449 2.90700 3.25830 3.29743 3.36475 3.37070 3.39444 4.40267 4.83885 4.96599 4.99129 5.07325 5.17518 5.20511 5.30490 5.44524 5.48007 5.55212 5.67034 5.73664 5.83613 5.83719 5.90451 6.04930 6.08324 6.13353 6.22297 6.29778 6.34320 6.40098 6.46582 6.54391 6.73988 6.79261 6.93510 7.08941 7.22849 7.33970 7.50893 7.75005 7.82732 8.01458 8.13627 8.48973 9.00272 9.57359 11.04264 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.004400 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.502757 B = 6362.694817 C = 6952.685631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.165 4.165 5 C 0.066 3.934 6 N -0.522 5.522 7 C 0.157 3.843 8 C -0.504 4.504 9 H 0.061 0.939 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.065 3.935 17 C 0.102 3.898 18 C -0.201 4.201 19 C -0.087 4.087 20 C -0.076 4.076 21 C 0.556 3.444 22 O -0.517 6.517 23 O -0.524 6.524 24 N -0.533 5.533 25 H 0.425 0.575 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 6.329 0.596 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.221 4.221 5 C -0.063 4.063 6 N -0.244 5.244 7 C 0.033 3.967 8 C -0.543 4.543 9 H 0.079 0.921 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.200 1.200 16 C -0.063 4.063 17 C -0.019 4.019 18 C -0.225 4.225 19 C -0.114 4.114 20 C -0.185 4.185 21 C 0.403 3.597 22 O -0.406 6.406 23 O -0.337 6.337 24 N -0.138 5.138 25 H 0.273 0.727 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.900 5.869 0.908 15.115 hybrid contribution 0.432 1.279 0.033 1.350 sum -13.468 7.148 0.941 15.276 Atomic orbital electron populations 1.23183 0.97350 1.02666 1.01860 1.21154 0.93757 0.96673 0.98319 1.21818 1.01716 0.95068 1.00691 1.22784 1.02093 1.01947 0.95291 1.22286 1.02469 0.87686 0.93882 1.62253 1.01202 1.12177 1.48813 1.20614 0.85568 0.96568 0.93911 1.21125 0.90020 1.40210 1.02912 0.92104 1.24915 0.98980 0.95451 0.95019 1.69938 1.24507 1.43079 1.16240 0.86567 0.82775 0.78705 0.79777 1.20674 1.21408 1.19976 1.21760 0.88819 1.03189 0.92494 1.20784 0.93372 0.87788 0.99936 1.20716 1.00860 0.99443 1.01477 1.21333 0.97680 0.92304 1.00078 1.19153 1.00488 0.95031 1.03857 1.19582 0.81593 0.79284 0.79274 1.90924 1.46343 1.70715 1.32645 1.84602 1.57059 1.25386 1.66608 1.43186 1.25782 1.13454 1.31382 0.72683 0.92650 0.92046 0.89408 0.91939 0.93345 0.93203 0.89507 0.94238 0.90777 0.93172 0.88875 0.95372 0.94562 0.92973 0.89018 0.89701 0.83537 0.83595 0.72838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 6.09 37.16 0.23 -2.10 16 2 C -0.10 -1.42 0.77 -154.51 -0.12 -1.53 16 3 C -0.14 -1.81 8.33 37.16 0.31 -1.50 16 4 C -0.16 -2.64 6.21 37.15 0.23 -2.41 16 5 C 0.07 1.15 4.78 -3.82 -0.02 1.13 16 6 N -0.52 -10.03 4.62 -237.52 -1.10 -11.13 16 7 C 0.16 3.65 4.08 -4.98 -0.02 3.63 16 8 C -0.50 -13.20 8.20 -34.44 -0.28 -13.48 16 9 H 0.06 1.61 7.11 -52.49 -0.37 1.24 16 10 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -25.19 13.29 55.43 0.74 -24.46 16 12 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.07 1.04 3.88 -4.97 -0.02 1.02 16 17 C 0.10 1.54 5.97 -82.20 -0.49 1.05 16 18 C -0.20 -3.01 10.71 -39.98 -0.43 -3.44 16 19 C -0.09 -1.26 10.66 -39.09 -0.42 -1.68 16 20 C -0.08 -1.09 7.10 -82.00 -0.58 -1.67 16 21 C 0.56 7.51 8.30 34.06 0.28 7.79 16 22 O -0.52 -8.11 17.67 -19.35 -0.34 -8.45 16 23 O -0.52 -5.23 13.44 -41.02 -0.55 -5.78 16 24 N -0.53 -7.33 5.44 -5.82 -0.03 -7.36 16 25 H 0.42 5.25 4.41 -40.82 -0.18 5.07 16 26 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 28 H 0.09 1.10 2.02 -51.93 -0.10 0.99 16 29 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.48 3.04 -51.93 -0.16 1.33 16 33 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 34 H 0.07 1.39 7.17 -51.93 -0.37 1.01 16 35 H 0.05 0.85 7.95 -51.93 -0.41 0.44 16 36 H 0.09 1.87 6.13 -51.93 -0.32 1.55 16 37 H 0.03 0.72 7.88 -51.93 -0.41 0.31 16 38 H 0.04 0.85 3.55 -51.93 -0.18 0.67 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.09 1.46 7.71 -51.93 -0.40 1.06 16 41 H 0.09 1.23 2.41 -51.93 -0.13 1.11 16 42 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.41 2.10 9.11 45.56 0.42 2.52 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -30.19 336.40 -7.74 -37.92 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.08 Total: 10.01 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.42 Total: -11.76 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.39 Total: -42.95 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.89 Total: -14.23 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.19 -7.74 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833430066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.441 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds