Wall clock time and date at job start Tue Mar 31 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46857 * 2 1 4 4 C 1.52994 * 109.47155 * 239.99784 * 2 1 3 5 5 C 1.52995 * 109.46800 * 119.99890 * 2 1 3 6 6 N 1.46905 * 109.47514 * 82.43229 * 5 2 1 7 7 C 1.46899 * 110.99634 * 80.26745 * 6 5 2 8 8 C 1.50693 * 109.47342 * 63.02733 * 7 6 5 9 9 H 1.08002 * 119.99846 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99555 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00120 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47367 * 89.99789 * 12 10 8 14 14 H 1.48503 * 109.46973 * 210.00062 * 12 10 8 15 15 H 1.48504 * 109.47232 * 329.99597 * 12 10 8 16 16 C 1.46902 * 110.99716 * 316.31625 * 6 5 2 17 17 C 1.50701 * 109.47073 * 280.09658 * 16 6 5 18 18 C 1.35491 * 125.50051 * 269.60393 * 17 16 6 19 19 C 1.39802 * 107.83871 * 180.02562 * 18 17 16 20 20 C 1.37989 * 106.96828 * 359.74027 * 19 18 17 21 21 C 1.46495 * 126.26292 * 180.25640 * 20 19 18 22 22 O 1.21612 * 120.00083 * 0.18897 * 21 20 19 23 23 O 1.34891 * 119.99852 * 180.18937 * 21 20 19 24 24 N 1.34956 * 125.51239 * 89.62948 * 17 16 6 25 25 H 0.97002 * 125.63187 * 359.97438 * 24 17 16 26 26 H 1.08996 * 109.47354 * 306.46594 * 1 2 3 27 27 H 1.09004 * 109.46944 * 66.46640 * 1 2 3 28 28 H 1.09002 * 109.46616 * 186.46389 * 1 2 3 29 29 H 1.08998 * 109.46940 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47109 * 299.99755 * 3 2 1 31 31 H 1.09002 * 109.47548 * 59.99896 * 3 2 1 32 32 H 1.09001 * 109.47225 * 287.33062 * 4 2 1 33 33 H 1.09002 * 109.47038 * 47.33013 * 4 2 1 34 34 H 1.09001 * 109.47298 * 167.32760 * 4 2 1 35 35 H 1.09000 * 109.47366 * 322.42465 * 5 2 1 36 36 H 1.09005 * 109.46815 * 202.43238 * 5 2 1 37 37 H 1.08998 * 109.46605 * 183.02281 * 7 6 5 38 38 H 1.08998 * 109.47411 * 303.01809 * 7 6 5 39 39 H 0.97005 * 119.99911 * 180.02562 * 11 10 8 40 40 H 1.08993 * 109.47272 * 160.09086 * 16 6 5 41 41 H 1.09003 * 109.47123 * 40.08899 * 16 6 5 42 42 H 1.07996 * 126.08115 * 0.05593 * 18 17 16 43 43 H 1.08000 * 126.51015 * 180.02562 * 19 18 17 44 44 H 0.96707 * 117.00032 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 2.0313 -2.1715 1.0154 7 6 3.2090 -2.5870 0.2420 8 6 4.4580 -2.2951 1.0329 9 1 4.3843 -1.8453 2.0121 10 6 5.6949 -2.6020 0.5066 11 7 5.7846 -3.1501 -0.6855 12 14 7.2431 -2.2394 1.4868 13 1 7.5844 -3.4157 2.3264 14 1 8.3637 -1.9546 0.5548 15 1 7.0122 -1.0594 2.3584 16 6 0.7901 -2.5899 0.3501 17 6 -0.3153 -2.6944 1.3690 18 6 -0.6353 -3.8079 2.0715 19 6 -1.7118 -3.4931 2.9061 20 6 -2.0176 -2.1658 2.6857 21 6 -3.0773 -1.3995 3.3460 22 8 -3.7843 -1.9328 4.1794 23 8 -3.2688 -0.1023 3.0294 24 7 -1.1468 -1.6941 1.7289 25 1 -1.1309 -0.7911 1.3751 26 1 -0.3634 0.6108 0.8264 27 1 -0.3633 0.4103 -0.9422 28 1 -0.3633 -1.0212 0.1157 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.8726 -1.7931 -1.1437 33 1 1.5045 -0.3543 -2.1247 34 1 3.1065 -0.5302 -1.3691 35 1 1.3932 -0.4855 2.0943 36 1 3.0567 -0.3945 1.4678 37 1 3.1504 -3.6560 0.0370 38 1 3.2381 -2.0378 -0.6991 39 1 6.6547 -3.3664 -1.0556 40 1 0.9408 -3.5601 -0.1232 41 1 0.5180 -1.8546 -0.4070 42 1 -0.1456 -4.7678 1.9997 43 1 -2.2065 -4.1607 3.5960 44 1 -3.9805 0.3619 3.4913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833430066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:30 Heat of formation + Delta-G solvation = 7.384532 kcal Electronic energy + Delta-G solvation = -25068.903566 eV Core-core repulsion = 21603.330433 eV Total energy + Delta-G solvation = -3465.573133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.89661 -41.06366 -40.24188 -37.10103 -35.67513 -34.38323 -32.60904 -31.76815 -29.30828 -28.97865 -28.13056 -27.34811 -25.74481 -24.02576 -22.30437 -21.62554 -21.03572 -20.07548 -19.28900 -18.58492 -18.31561 -17.14268 -16.88807 -16.73157 -16.22466 -15.80434 -15.68519 -14.96769 -14.84952 -14.63737 -14.55034 -14.16806 -13.95140 -13.75038 -13.58124 -13.22426 -12.98671 -12.78307 -12.67039 -12.62609 -12.51976 -12.49744 -12.38480 -12.09439 -11.95170 -11.89907 -11.66458 -11.45426 -11.18910 -11.06802 -10.49677 -9.97435 -9.20472 -8.64893 -8.12170 -6.17921 0.18612 1.41474 1.43247 1.52111 1.63204 1.91987 2.15826 2.34205 2.44309 3.20385 3.48296 3.81408 3.83369 3.90035 3.96908 4.16005 4.28129 4.34898 4.46758 4.50866 4.60479 4.67074 4.72584 4.78656 4.84136 4.93929 4.95358 5.01912 5.08050 5.21692 5.25203 5.28906 5.38003 5.44151 5.50061 5.50696 5.55473 5.72194 5.80476 5.95485 6.16200 6.43398 6.43869 6.72338 6.94804 6.96709 7.48487 8.96767 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.004400 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.502757 B = 6362.694817 C = 6952.685631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.161 4.161 5 C 0.068 3.932 6 N -0.534 5.534 7 C 0.171 3.829 8 C -0.513 4.513 9 H 0.052 0.948 10 C 0.009 3.991 11 N -0.929 5.929 12 Si 0.952 3.048 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.070 3.930 17 C 0.092 3.908 18 C -0.211 4.211 19 C -0.097 4.097 20 C -0.079 4.079 21 C 0.565 3.435 22 O -0.542 6.542 23 O -0.512 6.512 24 N -0.521 5.521 25 H 0.432 0.568 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.061 0.939 37 H -0.003 1.003 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 8.106 0.908 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.094 4.094 3 C -0.190 4.190 4 C -0.218 4.218 5 C -0.060 4.060 6 N -0.257 5.257 7 C 0.046 3.954 8 C -0.552 4.552 9 H 0.070 0.930 10 C -0.189 4.189 11 N -0.570 5.570 12 Si 0.779 3.221 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.057 4.057 17 C -0.029 4.029 18 C -0.235 4.235 19 C -0.124 4.124 20 C -0.190 4.190 21 C 0.411 3.589 22 O -0.434 6.434 23 O -0.327 6.327 24 N -0.127 5.127 25 H 0.282 0.718 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.015 0.985 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -15.534 7.692 1.225 17.377 hybrid contribution 0.859 0.766 -0.046 1.152 sum -14.675 8.458 1.179 16.979 Atomic orbital electron populations 1.23082 0.94674 1.02858 1.03946 1.21062 0.95816 0.96785 0.95722 1.21786 1.00391 0.94396 1.02434 1.22662 1.00313 1.01431 0.97366 1.22210 1.01024 0.86925 0.95843 1.62082 1.01274 1.13583 1.48796 1.20311 0.86491 0.94591 0.94024 1.21435 0.91523 1.39518 1.02703 0.92979 1.25639 1.01835 0.95476 0.95917 1.70040 1.25097 1.44257 1.17592 0.85637 0.79411 0.78557 0.78523 1.20538 1.20951 1.19365 1.21732 0.87567 1.03335 0.93072 1.20540 0.93665 0.88375 1.00293 1.20885 1.01198 0.99740 1.01644 1.21518 0.97665 0.92888 1.00300 1.19392 1.00662 0.95290 1.03626 1.19365 0.80836 0.80102 0.78549 1.90923 1.47166 1.71564 1.33728 1.84542 1.58006 1.23632 1.66473 1.43096 1.25179 1.13455 1.30967 0.71823 0.90864 0.89754 0.90018 0.94121 0.91357 0.91662 0.90923 0.91575 0.94221 0.92214 0.92045 0.98462 0.94594 0.92975 0.89729 0.87757 0.83374 0.82579 0.70119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 6.09 71.99 0.44 -3.44 16 2 C -0.09 -2.53 0.77 -52.18 -0.04 -2.57 16 3 C -0.13 -3.28 8.33 71.98 0.60 -2.68 16 4 C -0.16 -5.09 6.21 71.98 0.45 -4.64 16 5 C 0.07 2.38 4.78 86.30 0.41 2.79 16 6 N -0.53 -20.85 4.62 -905.37 -4.18 -25.04 16 7 C 0.17 8.23 4.08 85.55 0.35 8.58 16 8 C -0.51 -27.70 8.20 25.60 0.21 -27.49 16 9 H 0.05 2.84 7.11 -2.91 -0.02 2.82 16 10 C 0.01 0.51 5.46 84.66 0.46 0.98 16 11 N -0.93 -53.46 13.29 21.45 0.28 -53.17 16 12 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 16 C 0.07 2.22 3.88 85.56 0.33 2.55 16 17 C 0.09 2.68 5.97 41.44 0.25 2.93 16 18 C -0.21 -6.18 10.71 22.01 0.24 -5.94 16 19 C -0.10 -2.69 10.66 22.59 0.24 -2.45 16 20 C -0.08 -2.13 7.10 40.32 0.29 -1.84 16 21 C 0.56 13.81 8.30 69.97 0.58 14.39 16 22 O -0.54 -15.97 17.67 19.47 0.34 -15.63 16 23 O -0.51 -8.37 13.44 -58.05 -0.78 -9.15 16 24 N -0.52 -13.16 5.44 -172.33 -0.94 -14.10 16 25 H 0.43 9.28 4.41 -92.71 -0.41 8.87 16 26 H 0.07 1.29 7.16 -2.39 -0.02 1.27 16 27 H 0.08 1.41 8.06 -2.39 -0.02 1.39 16 28 H 0.08 1.80 2.02 -2.39 0.00 1.80 16 29 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.50 3.04 -2.39 -0.01 2.49 16 33 H 0.07 1.70 8.02 -2.39 -0.02 1.69 16 34 H 0.04 1.51 7.17 -2.39 -0.02 1.50 16 35 H 0.06 1.95 7.95 -2.39 -0.02 1.93 16 36 H 0.06 2.52 6.13 -2.38 -0.01 2.50 16 37 H 0.00 -0.15 7.88 -2.39 -0.02 -0.16 16 38 H 0.04 1.76 3.55 -2.39 -0.01 1.75 16 39 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 40 H 0.08 2.76 7.71 -2.39 -0.02 2.74 16 41 H 0.11 2.88 2.41 -2.39 -0.01 2.88 16 42 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 44 H 0.44 2.79 9.11 -74.05 -0.67 2.12 16 Total: -1.00 -65.94 336.40 1.53 -64.41 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.03 Total: 25.86 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.80 Total: -18.85 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -4.83 Total: -92.31 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.44 Total: -24.78 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -65.94 1.53 -64.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833430066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.797 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds