Wall clock time and date at job start Tue Mar 31 2020 07:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 C 1.53003 * 109.46859 * 240.00193 * 2 1 3 5 5 C 1.52994 * 109.47010 * 120.00326 * 2 1 3 6 6 N 1.46895 * 109.47581 * 82.60565 * 5 2 1 7 7 C 1.46895 * 111.00163 * 81.26608 * 6 5 2 8 8 C 1.50705 * 109.47098 * 69.86614 * 7 6 5 9 9 H 1.07996 * 119.99794 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99927 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99653 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00232 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47029 * 90.00101 * 12 10 8 14 14 H 1.48495 * 109.47357 * 209.99875 * 12 10 8 15 15 H 1.48495 * 109.47607 * 330.00325 * 12 10 8 16 16 C 1.46905 * 110.99676 * 317.31683 * 6 5 2 17 17 C 1.50702 * 109.46921 * 276.41282 * 16 6 5 18 18 C 1.35491 * 126.07850 * 262.47444 * 17 16 6 19 19 N 1.34956 * 108.98469 * 180.02562 * 18 17 16 20 20 H 0.96997 * 125.63141 * 180.02562 * 19 18 17 21 21 C 1.37701 * 108.72802 * 359.75113 * 19 18 17 22 22 C 1.46486 * 126.26261 * 180.24704 * 21 19 18 23 23 O 1.21619 * 120.00285 * 180.17327 * 22 21 19 24 24 O 1.34896 * 120.00152 * 0.17745 * 22 21 19 25 25 C 1.37998 * 107.47504 * 0.40039 * 21 19 18 26 26 H 1.09002 * 109.47285 * 305.96133 * 1 2 3 27 27 H 1.09006 * 109.47327 * 65.96310 * 1 2 3 28 28 H 1.08998 * 109.47029 * 185.96116 * 1 2 3 29 29 H 1.08995 * 109.47323 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47360 * 300.00460 * 3 2 1 31 31 H 1.09001 * 109.46851 * 59.99874 * 3 2 1 32 32 H 1.08996 * 109.47158 * 281.56192 * 4 2 1 33 33 H 1.08995 * 109.47209 * 41.56673 * 4 2 1 34 34 H 1.09002 * 109.46624 * 161.56442 * 4 2 1 35 35 H 1.09004 * 109.47181 * 322.60017 * 5 2 1 36 36 H 1.09003 * 109.47080 * 202.60426 * 5 2 1 37 37 H 1.09004 * 109.47453 * 189.86871 * 7 6 5 38 38 H 1.09003 * 109.47461 * 309.86692 * 7 6 5 39 39 H 0.97003 * 119.99813 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.46835 * 156.41261 * 16 6 5 41 41 H 1.08997 * 109.47176 * 36.41499 * 16 6 5 42 42 H 1.08001 * 125.50390 * 0.03509 * 18 17 16 43 43 H 0.96696 * 117.00302 * 179.97438 * 24 22 21 44 44 H 1.07998 * 126.51379 * 179.87614 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 2.0352 -2.1712 1.0137 7 6 3.2269 -2.5865 0.2620 8 6 4.4456 -2.4527 1.1384 9 1 4.3447 -2.0953 2.1525 10 6 5.6892 -2.7864 0.6455 11 7 6.7526 -2.6701 1.4105 12 14 5.8635 -3.4052 -1.1083 13 1 6.0858 -2.2539 -2.0196 14 1 7.0192 -4.3337 -1.1931 15 1 4.6242 -4.1197 -1.5068 16 6 0.8065 -2.5886 0.3251 17 6 -0.2949 -2.7813 1.3354 18 6 -0.6799 -3.9602 1.8811 19 7 -1.6948 -3.7351 2.7416 20 1 -2.1525 -4.4114 3.2650 21 6 -1.9692 -2.3858 2.7585 22 6 -2.9966 -1.7204 3.5632 23 8 -3.1436 -0.5156 3.4864 24 8 -3.7797 -2.4441 4.3895 25 6 -1.1014 -1.7754 1.8759 26 1 -0.3634 0.6035 0.8318 27 1 -0.3634 0.4186 -0.9386 28 1 -0.3633 -1.0221 0.1067 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.9669 -1.7987 -1.1021 33 1 1.4362 -0.4301 -2.1088 34 1 3.0802 -0.4485 -1.4270 35 1 1.3913 -0.4881 2.0936 36 1 3.0556 -0.3924 1.4695 37 1 3.1161 -3.6250 -0.0502 38 1 3.3407 -1.9529 -0.6177 39 1 7.6275 -2.9053 1.0639 40 1 0.9854 -3.5266 -0.2007 41 1 0.5126 -1.8211 -0.3909 42 1 -0.2447 -4.9242 1.6627 43 1 -4.4433 -1.9608 4.9005 44 1 -1.0517 -0.7207 1.6494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833431011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:37 Heat of formation + Delta-G solvation = 24.084432 kcal Electronic energy + Delta-G solvation = -24956.880111 eV Core-core repulsion = 21492.031140 eV Total energy + Delta-G solvation = -3464.848971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54395 -39.89106 -39.23737 -36.19109 -33.99208 -32.68944 -31.62792 -29.76789 -28.02644 -27.71533 -26.82830 -25.91631 -23.98256 -23.15719 -20.53990 -20.34409 -19.69445 -18.54185 -18.06340 -17.76497 -16.71724 -15.85726 -15.70540 -15.21758 -14.75931 -14.58893 -14.19973 -13.81967 -13.64693 -13.46446 -13.36423 -13.04029 -12.54313 -12.38016 -12.21105 -11.76801 -11.73310 -11.35587 -11.29516 -11.19017 -11.03901 -10.86384 -10.84668 -10.58248 -10.48779 -10.16831 -9.84737 -9.71721 -9.67424 -9.16222 -8.75142 -8.50117 -8.14629 -7.02553 -5.98969 -3.93591 1.23027 2.72769 2.83001 3.18168 3.25512 3.29920 3.38384 3.38723 4.46052 5.02368 5.08084 5.17931 5.21305 5.26170 5.29010 5.33469 5.48606 5.53475 5.74285 5.88909 5.94540 5.95241 6.06377 6.10447 6.15043 6.21593 6.25832 6.27906 6.34544 6.44014 6.48213 6.58904 6.69167 6.77026 6.83841 6.90894 7.02009 7.04318 7.09117 7.42481 7.72142 7.77482 8.05149 8.18122 8.76182 9.12246 9.63664 11.14741 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.004549 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.423993 B = 6154.350001 C = 6855.716453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.169 4.169 5 C 0.071 3.929 6 N -0.514 5.514 7 C 0.131 3.869 8 C -0.500 4.500 9 H 0.078 0.922 10 C 0.066 3.934 11 N -0.904 5.904 12 Si 0.871 3.129 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.072 3.928 17 C -0.154 4.154 18 C 0.053 3.947 19 N -0.530 5.530 20 H 0.420 0.580 21 C -0.066 4.066 22 C 0.555 3.445 23 O -0.512 6.512 24 O -0.525 6.525 25 C -0.092 4.092 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.174 0.826 43 H 0.414 0.586 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.087 -0.189 -0.734 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.226 4.226 5 C -0.058 4.058 6 N -0.236 5.236 7 C 0.006 3.994 8 C -0.538 4.538 9 H 0.096 0.904 10 C -0.134 4.134 11 N -0.544 5.544 12 Si 0.698 3.302 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.192 1.192 16 C -0.056 4.056 17 C -0.160 4.160 18 C -0.085 4.085 19 N -0.125 5.125 20 H 0.257 0.743 21 C -0.176 4.176 22 C 0.401 3.599 23 O -0.401 6.401 24 O -0.338 6.338 25 C -0.119 4.119 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.191 0.809 43 H 0.272 0.728 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.717 -0.436 -0.409 18.726 hybrid contribution -0.307 0.010 -0.942 0.991 sum -19.024 -0.426 -1.351 19.077 Atomic orbital electron populations 1.23212 0.95647 1.04153 1.00942 1.21151 0.95153 0.96144 0.97620 1.21831 1.01307 0.95461 1.00728 1.22811 1.00907 1.02561 0.96284 1.22216 1.02117 0.87063 0.94392 1.62065 1.00796 1.12783 1.47998 1.20927 0.88678 0.95413 0.94408 1.21072 0.89036 1.43111 1.00603 0.90368 1.24876 0.95872 0.95609 0.97061 1.69900 0.98655 1.49607 1.36211 0.86936 0.77911 0.79247 0.86087 1.20372 1.21402 1.19165 1.21531 0.89195 1.01419 0.93439 1.19544 1.00404 0.91756 1.04288 1.21915 0.91549 1.00644 0.94398 1.41765 1.28779 1.07244 1.34677 0.74302 1.19193 1.05169 0.84002 1.09243 1.19583 0.78888 0.84733 0.76736 1.90947 1.68858 1.14852 1.65429 1.84579 1.48559 1.45706 1.54936 1.22018 0.93975 1.00642 0.95246 0.92631 0.93553 0.88031 0.92323 0.93576 0.93012 0.89537 0.93991 0.92052 0.92255 0.89530 0.95987 0.96236 0.92856 0.91534 0.89209 0.80930 0.72779 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 6.15 37.16 0.23 -2.27 16 2 C -0.10 -1.55 0.77 -154.51 -0.12 -1.66 16 3 C -0.14 -1.98 8.28 37.16 0.31 -1.68 16 4 C -0.17 -2.75 6.26 37.16 0.23 -2.52 16 5 C 0.07 1.32 4.84 -3.83 -0.02 1.30 16 6 N -0.51 -10.12 4.54 -237.51 -1.08 -11.20 16 7 C 0.13 2.99 2.97 -4.98 -0.01 2.97 16 8 C -0.50 -13.82 8.83 -34.44 -0.30 -14.12 16 9 H 0.08 2.40 7.84 -52.49 -0.41 1.99 16 10 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 11 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 12 Si 0.87 21.03 27.47 -169.99 -4.67 16.37 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 16 C 0.07 1.14 3.80 -4.97 -0.02 1.12 16 17 C -0.15 -2.22 5.27 -105.02 -0.55 -2.77 16 18 C 0.05 0.65 11.78 -17.16 -0.20 0.45 16 19 N -0.53 -5.76 6.07 -9.53 -0.06 -5.82 16 20 H 0.42 3.29 8.96 -40.82 -0.37 2.93 16 21 C -0.07 -0.88 7.10 -82.00 -0.58 -1.46 16 22 C 0.55 7.00 8.30 34.05 0.28 7.29 16 23 O -0.51 -7.88 17.67 -19.36 -0.34 -8.22 16 24 O -0.53 -4.60 13.44 -41.03 -0.55 -5.15 16 25 C -0.09 -1.33 8.63 -39.09 -0.34 -1.66 16 26 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 27 H 0.05 0.58 8.02 -51.93 -0.42 0.16 16 28 H 0.10 1.39 2.15 -51.93 -0.11 1.28 16 29 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.48 2.90 -51.93 -0.15 1.33 16 33 H 0.04 0.59 7.92 -51.93 -0.41 0.18 16 34 H 0.06 1.09 7.25 -51.93 -0.38 0.72 16 35 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 36 H 0.09 1.86 6.67 -51.93 -0.35 1.52 16 37 H 0.02 0.51 6.74 -51.93 -0.35 0.16 16 38 H 0.02 0.45 3.32 -51.93 -0.17 0.27 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 41 H 0.09 1.35 2.31 -51.93 -0.12 1.23 16 42 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.41 1.75 9.11 45.56 0.42 2.16 16 44 H 0.16 2.35 4.49 -52.49 -0.24 2.12 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -33.21 332.82 -7.16 -40.37 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.05 Total: 8.63 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.20 Total: -13.23 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.36 Total: -43.77 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.89 Total: -13.37 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.21 -7.16 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833431011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.450 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds