Wall clock time and date at job start Tue Mar 31 2020 07:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 C 1.53003 * 109.46859 * 240.00193 * 2 1 3 5 5 C 1.52994 * 109.47010 * 120.00326 * 2 1 3 6 6 N 1.46895 * 109.47581 * 82.60565 * 5 2 1 7 7 C 1.46895 * 111.00163 * 81.26608 * 6 5 2 8 8 C 1.50705 * 109.47098 * 69.86614 * 7 6 5 9 9 H 1.07996 * 119.99794 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99927 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99653 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00232 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47029 * 90.00101 * 12 10 8 14 14 H 1.48495 * 109.47357 * 209.99875 * 12 10 8 15 15 H 1.48495 * 109.47607 * 330.00325 * 12 10 8 16 16 C 1.46905 * 110.99676 * 317.31683 * 6 5 2 17 17 C 1.50702 * 109.46921 * 276.41282 * 16 6 5 18 18 C 1.35491 * 126.07850 * 262.47444 * 17 16 6 19 19 N 1.34956 * 108.98469 * 180.02562 * 18 17 16 20 20 H 0.96997 * 125.63141 * 180.02562 * 19 18 17 21 21 C 1.37701 * 108.72802 * 359.75113 * 19 18 17 22 22 C 1.46486 * 126.26261 * 180.24704 * 21 19 18 23 23 O 1.21619 * 120.00285 * 180.17327 * 22 21 19 24 24 O 1.34896 * 120.00152 * 0.17745 * 22 21 19 25 25 C 1.37998 * 107.47504 * 0.40039 * 21 19 18 26 26 H 1.09002 * 109.47285 * 305.96133 * 1 2 3 27 27 H 1.09006 * 109.47327 * 65.96310 * 1 2 3 28 28 H 1.08998 * 109.47029 * 185.96116 * 1 2 3 29 29 H 1.08995 * 109.47323 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47360 * 300.00460 * 3 2 1 31 31 H 1.09001 * 109.46851 * 59.99874 * 3 2 1 32 32 H 1.08996 * 109.47158 * 281.56192 * 4 2 1 33 33 H 1.08995 * 109.47209 * 41.56673 * 4 2 1 34 34 H 1.09002 * 109.46624 * 161.56442 * 4 2 1 35 35 H 1.09004 * 109.47181 * 322.60017 * 5 2 1 36 36 H 1.09003 * 109.47080 * 202.60426 * 5 2 1 37 37 H 1.09004 * 109.47453 * 189.86871 * 7 6 5 38 38 H 1.09003 * 109.47461 * 309.86692 * 7 6 5 39 39 H 0.97003 * 119.99813 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.46835 * 156.41261 * 16 6 5 41 41 H 1.08997 * 109.47176 * 36.41499 * 16 6 5 42 42 H 1.08001 * 125.50390 * 0.03509 * 18 17 16 43 43 H 0.96696 * 117.00302 * 179.97438 * 24 22 21 44 44 H 1.07998 * 126.51379 * 179.87614 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 2.0352 -2.1712 1.0137 7 6 3.2269 -2.5865 0.2620 8 6 4.4456 -2.4527 1.1384 9 1 4.3447 -2.0953 2.1525 10 6 5.6892 -2.7864 0.6455 11 7 6.7526 -2.6701 1.4105 12 14 5.8635 -3.4052 -1.1083 13 1 6.0858 -2.2539 -2.0196 14 1 7.0192 -4.3337 -1.1931 15 1 4.6242 -4.1197 -1.5068 16 6 0.8065 -2.5886 0.3251 17 6 -0.2949 -2.7813 1.3354 18 6 -0.6799 -3.9602 1.8811 19 7 -1.6948 -3.7351 2.7416 20 1 -2.1525 -4.4114 3.2650 21 6 -1.9692 -2.3858 2.7585 22 6 -2.9966 -1.7204 3.5632 23 8 -3.1436 -0.5156 3.4864 24 8 -3.7797 -2.4441 4.3895 25 6 -1.1014 -1.7754 1.8759 26 1 -0.3634 0.6035 0.8318 27 1 -0.3634 0.4186 -0.9386 28 1 -0.3633 -1.0221 0.1067 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.9669 -1.7987 -1.1021 33 1 1.4362 -0.4301 -2.1088 34 1 3.0802 -0.4485 -1.4270 35 1 1.3913 -0.4881 2.0936 36 1 3.0556 -0.3924 1.4695 37 1 3.1161 -3.6250 -0.0502 38 1 3.3407 -1.9529 -0.6177 39 1 7.6275 -2.9053 1.0639 40 1 0.9854 -3.5266 -0.2007 41 1 0.5126 -1.8211 -0.3909 42 1 -0.2447 -4.9242 1.6627 43 1 -4.4433 -1.9608 4.9005 44 1 -1.0517 -0.7207 1.6494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833431011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:36 Heat of formation + Delta-G solvation = -0.511946 kcal Electronic energy + Delta-G solvation = -24957.946690 eV Core-core repulsion = 21492.031140 eV Total energy + Delta-G solvation = -3465.915550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.57393 -41.03603 -40.35589 -37.07641 -35.55246 -34.41802 -33.05632 -30.81826 -29.68213 -28.99085 -28.18564 -27.17143 -25.27830 -24.49183 -22.09103 -21.47461 -20.70159 -19.76567 -19.23690 -18.72460 -18.63603 -16.92729 -16.79133 -16.59755 -16.24197 -16.06528 -15.46574 -15.10827 -14.91669 -14.77809 -14.44239 -14.31756 -14.25151 -13.63292 -13.49786 -13.03660 -12.97737 -12.77617 -12.62360 -12.44773 -12.39762 -12.28932 -12.16796 -11.94988 -11.87587 -11.71556 -11.53957 -11.36320 -11.09728 -10.94257 -10.64436 -9.78236 -9.18041 -8.52992 -8.18808 -6.18346 0.25261 1.39384 1.40975 1.51480 1.70538 1.95834 2.15821 2.41402 2.41636 3.15892 3.61168 3.94701 3.99741 4.08144 4.19122 4.25365 4.34889 4.47728 4.58849 4.64913 4.72030 4.76445 4.83083 4.89894 4.97047 4.99355 5.06646 5.08535 5.13848 5.22240 5.25291 5.28949 5.40433 5.45277 5.51716 5.53700 5.59891 5.71653 5.79766 5.98710 6.16844 6.58168 6.60333 6.86076 6.89347 6.96225 7.43500 8.98816 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.004549 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.423993 B = 6154.350001 C = 6855.716453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.169 4.169 5 C 0.077 3.923 6 N -0.531 5.531 7 C 0.142 3.858 8 C -0.502 4.502 9 H 0.027 0.973 10 C 0.003 3.997 11 N -0.957 5.957 12 Si 0.942 3.058 13 H -0.269 1.269 14 H -0.288 1.288 15 H -0.240 1.240 16 C 0.075 3.925 17 C -0.179 4.179 18 C 0.065 3.935 19 N -0.511 5.511 20 H 0.436 0.564 21 C -0.078 4.078 22 C 0.561 3.439 23 O -0.546 6.546 24 O -0.511 6.511 25 C -0.107 4.107 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.199 0.801 43 H 0.435 0.565 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.656 -1.290 -2.501 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.096 4.096 3 C -0.191 4.191 4 C -0.226 4.226 5 C -0.051 4.051 6 N -0.253 5.253 7 C 0.016 3.984 8 C -0.540 4.540 9 H 0.045 0.955 10 C -0.192 4.192 11 N -0.599 5.599 12 Si 0.766 3.234 13 H -0.194 1.194 14 H -0.215 1.215 15 H -0.163 1.163 16 C -0.052 4.052 17 C -0.185 4.185 18 C -0.075 4.075 19 N -0.107 5.107 20 H 0.276 0.724 21 C -0.188 4.188 22 C 0.408 3.592 23 O -0.438 6.438 24 O -0.325 6.325 25 C -0.134 4.134 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.216 0.784 43 H 0.297 0.703 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.357 -1.554 -2.140 21.520 hybrid contribution 0.419 0.357 -0.212 0.590 sum -20.938 -1.197 -2.353 21.104 Atomic orbital electron populations 1.23114 0.93477 1.04526 1.02056 1.21082 0.96742 0.96088 0.95724 1.21809 1.00039 0.95225 1.02075 1.22759 1.00239 1.02105 0.97482 1.22041 0.99667 0.87240 0.96191 1.61951 1.01417 1.13349 1.48614 1.20728 0.88053 0.95786 0.93850 1.21346 0.91513 1.42000 0.99180 0.95465 1.25820 0.95285 0.95967 1.02157 1.70082 0.99377 1.51593 1.38850 0.85788 0.78789 0.78979 0.79876 1.19391 1.21458 1.16324 1.21552 0.87649 1.01988 0.93978 1.19458 1.00770 0.92882 1.05404 1.22269 0.90952 1.00998 0.93287 1.41718 1.28116 1.06857 1.33991 0.72374 1.19267 1.05379 0.84878 1.09307 1.19475 0.78823 0.84192 0.76680 1.90936 1.69917 1.16269 1.66651 1.84524 1.48560 1.45205 1.54246 1.22036 0.94722 1.00602 0.96062 0.92511 0.91613 0.87890 0.94340 0.91415 0.92462 0.90247 0.91106 0.94098 0.92357 0.93783 0.95619 0.95004 0.92862 0.90803 0.87995 0.78395 0.70272 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.43 6.15 71.98 0.44 -3.98 16 2 C -0.09 -2.88 0.77 -52.18 -0.04 -2.92 16 3 C -0.13 -3.84 8.28 71.98 0.60 -3.24 16 4 C -0.17 -5.21 6.26 71.98 0.45 -4.75 16 5 C 0.08 2.95 4.84 86.30 0.42 3.37 16 6 N -0.53 -20.93 4.54 -905.35 -4.11 -25.04 16 7 C 0.14 6.46 2.97 85.56 0.25 6.71 16 8 C -0.50 -28.83 8.83 25.60 0.23 -28.60 16 9 H 0.03 1.79 7.84 -2.91 -0.02 1.76 16 10 C 0.00 0.20 5.47 84.65 0.46 0.66 16 11 N -0.96 -60.61 13.96 21.45 0.30 -60.31 16 12 Si 0.94 43.37 27.47 68.60 1.88 45.25 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 16 C 0.07 2.26 3.80 85.56 0.32 2.58 16 17 C -0.18 -4.87 5.27 -20.12 -0.11 -4.97 16 18 C 0.06 1.41 11.78 83.58 0.98 2.39 16 19 N -0.51 -9.75 6.07 -184.05 -1.12 -10.86 16 20 H 0.44 5.44 8.96 -92.71 -0.83 4.60 16 21 C -0.08 -1.92 7.10 40.31 0.29 -1.64 16 22 C 0.56 13.22 8.30 69.97 0.58 13.81 16 23 O -0.55 -16.30 17.67 19.45 0.34 -15.96 16 24 O -0.51 -7.60 13.44 -58.11 -0.78 -8.38 16 25 C -0.11 -2.97 8.63 22.59 0.19 -2.77 16 26 H 0.06 1.43 6.91 -2.39 -0.02 1.41 16 27 H 0.06 1.42 8.02 -2.38 -0.02 1.40 16 28 H 0.10 2.62 2.15 -2.39 -0.01 2.61 16 29 H 0.04 1.23 8.11 -2.39 -0.02 1.21 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.56 2.90 -2.39 -0.01 2.55 16 33 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 34 H 0.04 1.41 7.25 -2.39 -0.02 1.39 16 35 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 36 H 0.04 2.03 6.67 -2.39 -0.02 2.01 16 37 H 0.03 1.16 6.74 -2.38 -0.02 1.14 16 38 H 0.03 1.41 3.32 -2.39 -0.01 1.40 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.07 2.10 7.53 -2.38 -0.02 2.08 16 41 H 0.10 2.82 2.31 -2.39 -0.01 2.82 16 42 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.43 2.48 9.11 -74.06 -0.67 1.80 16 44 H 0.16 4.41 4.49 -2.91 -0.01 4.40 16 Total: -1.00 -75.12 332.82 1.09 -74.03 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.49 Total: 24.63 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 5.08 Total: -23.36 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.93 Total: -96.22 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.44 Total: -24.34 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -75.12 1.09 -74.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833431011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.514 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds