Wall clock time and date at job start Tue Mar 31 2020 07:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 C 1.53000 * 109.46947 * 119.99906 * 2 1 3 5 5 C 1.52994 * 109.47270 * 65.00100 * 4 2 1 6 6 N 1.46903 * 109.46868 * 178.04559 * 5 4 2 7 7 C 1.46907 * 110.99935 * 287.91573 * 6 5 4 8 8 C 1.50694 * 109.47314 * 299.18122 * 7 6 5 9 9 H 1.08001 * 120.00163 * 4.63333 * 8 7 6 10 10 C 1.37881 * 120.00173 * 184.63571 * 8 7 6 11 11 N 1.31513 * 119.99921 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99752 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47037 * 89.99951 * 12 10 8 14 14 H 1.48495 * 109.47332 * 210.00171 * 12 10 8 15 15 H 1.48499 * 109.47309 * 330.00395 * 12 10 8 16 16 C 1.46905 * 110.99829 * 163.96649 * 6 5 4 17 17 C 1.50703 * 109.46988 * 189.99787 * 16 6 5 18 18 C 1.35484 * 125.50653 * 264.97235 * 17 16 6 19 19 C 1.39803 * 107.83883 * 180.02562 * 18 17 16 20 20 C 1.37989 * 106.97002 * 359.73924 * 19 18 17 21 21 C 1.46494 * 126.26735 * 180.25726 * 20 19 18 22 22 O 1.21623 * 119.99239 * 0.18720 * 21 20 19 23 23 O 1.34890 * 120.00557 * 180.19215 * 21 20 19 24 24 N 1.34956 * 125.50379 * 85.00332 * 17 16 6 25 25 H 0.97005 * 125.64047 * 359.96943 * 24 17 16 26 26 H 1.08997 * 109.47149 * 299.99633 * 1 2 3 27 27 H 1.08994 * 109.47193 * 60.00770 * 1 2 3 28 28 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46920 * 239.99617 * 2 1 3 30 30 H 1.09000 * 109.46778 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46651 * 300.00048 * 3 2 1 32 32 H 1.08993 * 109.47235 * 59.99853 * 3 2 1 33 33 H 1.08993 * 109.47099 * 304.99837 * 4 2 1 34 34 H 1.09005 * 109.46939 * 185.00229 * 4 2 1 35 35 H 1.09007 * 109.47014 * 58.05039 * 5 4 2 36 36 H 1.08995 * 109.47528 * 298.04427 * 5 4 2 37 37 H 1.08991 * 109.46532 * 59.18459 * 7 6 5 38 38 H 1.09007 * 109.46586 * 179.18381 * 7 6 5 39 39 H 0.96998 * 119.99526 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47006 * 69.99825 * 16 6 5 41 41 H 1.08996 * 109.47013 * 309.99614 * 16 6 5 42 42 H 1.07998 * 126.08439 * 0.05843 * 18 17 16 43 43 H 1.08004 * 126.51405 * 180.02562 * 19 18 17 44 44 H 0.96698 * 117.00436 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 7 2.1650 -2.8978 2.3645 7 6 3.6215 -3.0630 2.2675 8 6 3.9541 -3.8811 1.0465 9 1 3.1701 -4.1790 0.3660 10 6 5.2593 -4.2496 0.7981 11 7 5.5496 -4.9632 -0.2678 12 14 6.6154 -3.7340 1.9747 13 1 6.7830 -4.7727 3.0226 14 1 7.8878 -3.5769 1.2254 15 1 6.2535 -2.4423 2.6117 16 6 1.4992 -4.1945 2.5474 17 6 1.8843 -4.7727 3.8847 18 6 2.8873 -5.6577 4.0999 19 6 2.9189 -5.9450 5.4678 20 6 1.9149 -5.2048 6.0580 21 6 1.5779 -5.1830 7.4835 22 8 2.2130 -5.8606 8.2688 23 8 0.5634 -4.4115 7.9251 24 7 1.2854 -4.4931 5.0613 25 1 0.5378 -3.8875 5.1851 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2952 35 1 2.0412 -2.6463 0.2824 36 1 0.5482 -2.2736 1.1771 37 1 4.0936 -2.0838 2.1884 38 1 3.9893 -3.5730 3.1579 39 1 6.4679 -5.2221 -0.4427 40 1 1.8073 -4.8761 1.7545 41 1 0.4187 -4.0568 2.5087 42 1 3.5458 -6.0680 3.3486 43 1 3.6024 -6.6150 5.9681 44 1 0.3782 -4.4304 8.8740 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833484327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:34 Heat of formation + Delta-G solvation = -61.589972 kcal Electronic energy + Delta-G solvation = -24038.534166 eV Core-core repulsion = 20569.970074 eV Total energy + Delta-G solvation = -3468.564092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.18750 -39.54120 -37.61292 -36.06064 -35.47909 -32.43061 -30.84221 -30.53473 -28.64421 -27.52997 -26.98679 -25.01367 -23.15493 -22.61531 -20.48007 -20.02678 -19.61474 -19.39739 -18.36613 -17.41151 -16.89608 -15.74065 -15.39132 -15.21070 -14.64536 -14.25030 -14.18723 -13.68395 -13.57053 -13.52083 -13.00059 -12.94722 -12.72281 -12.47792 -12.26797 -12.16922 -11.92466 -11.61084 -11.58011 -11.19206 -11.10585 -10.99035 -10.76420 -10.72273 -10.42549 -10.32287 -10.25929 -10.05874 -9.77026 -9.55262 -8.70592 -8.58392 -7.92230 -7.30824 -6.12987 -4.12383 1.38954 2.91317 2.99959 3.28751 3.36489 3.39423 3.40967 3.47059 4.39124 4.76853 5.16566 5.19530 5.23078 5.26010 5.27216 5.37518 5.60855 5.66401 5.74905 5.75864 5.87730 5.94714 5.96334 6.02550 6.13550 6.19842 6.27326 6.32563 6.35280 6.43708 6.48577 6.55582 6.65865 6.73909 6.86010 6.91686 7.08304 7.13914 7.28114 7.52629 7.66215 7.91157 7.92857 7.99281 8.39834 8.87561 9.50662 10.99448 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.005289 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.227882 B = 5292.605396 C = 7144.831966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.057 3.943 6 N -0.534 5.534 7 C 0.149 3.851 8 C -0.547 4.547 9 H 0.075 0.925 10 C 0.078 3.922 11 N -0.897 5.897 12 Si 0.871 3.129 13 H -0.273 1.273 14 H -0.289 1.289 15 H -0.266 1.266 16 C 0.113 3.887 17 C 0.106 3.894 18 C -0.197 4.197 19 C -0.089 4.089 20 C -0.072 4.072 21 C 0.557 3.443 22 O -0.518 6.518 23 O -0.524 6.524 24 N -0.518 5.518 25 H 0.419 0.581 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.028 0.972 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 5.685 7.307 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.141 4.141 5 C -0.071 4.071 6 N -0.257 5.257 7 C 0.022 3.978 8 C -0.586 4.586 9 H 0.093 0.907 10 C -0.125 4.125 11 N -0.535 5.535 12 Si 0.699 3.301 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.190 1.190 16 C -0.016 4.016 17 C -0.015 4.015 18 C -0.220 4.220 19 C -0.116 4.116 20 C -0.182 4.182 21 C 0.404 3.596 22 O -0.408 6.408 23 O -0.336 6.336 24 N -0.113 5.113 25 H 0.256 0.744 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.171 0.829 43 H 0.164 0.836 44 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.033 5.811 7.496 14.550 hybrid contribution 0.685 -0.022 0.530 0.867 sum -10.349 5.789 8.026 14.319 Atomic orbital electron populations 1.21865 0.95867 1.01600 1.00882 1.21100 0.95316 0.95872 0.99353 1.21814 1.01110 0.96295 1.00950 1.21520 1.01507 0.94762 0.96299 1.22052 0.97525 0.93854 0.93644 1.62516 1.07239 1.17114 1.38852 1.20270 0.83724 0.96830 0.96934 1.21556 0.94569 1.33871 1.08556 0.90693 1.24880 0.98574 0.94209 0.94883 1.69915 1.19546 1.37383 1.26666 0.86907 0.81709 0.80054 0.81474 1.19835 1.21482 1.19042 1.20624 0.97274 0.92916 0.90745 1.20573 0.95576 0.98101 0.87206 1.20945 1.01574 1.03569 0.95949 1.21360 0.96834 0.99430 0.94016 1.19020 1.04729 1.09153 0.85296 1.19580 0.76662 0.75881 0.87522 1.90926 1.51569 1.42216 1.56068 1.84601 1.51227 1.64703 1.33075 1.41751 1.28122 1.35428 1.05989 0.74373 0.93109 0.93441 0.92531 0.91091 0.92706 0.93274 0.93097 0.92511 0.91502 0.92510 0.92883 0.95390 0.94916 0.92689 0.90136 0.91698 0.82860 0.83614 0.72989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.95 37.16 0.33 -1.33 16 2 C -0.10 -1.30 2.92 -90.62 -0.26 -1.57 16 3 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 4 C -0.10 -1.61 4.76 -26.73 -0.13 -1.73 16 5 C 0.06 0.97 4.51 -3.83 -0.02 0.95 16 6 N -0.53 -9.85 4.66 -237.51 -1.11 -10.95 16 7 C 0.15 3.31 3.82 -4.97 -0.02 3.29 16 8 C -0.55 -13.94 7.89 -34.44 -0.27 -14.21 16 9 H 0.08 2.06 6.20 -52.49 -0.33 1.74 16 10 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -26.05 13.96 55.43 0.77 -25.27 16 12 Si 0.87 20.95 27.38 -169.99 -4.65 16.30 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.25 6.68 56.52 0.38 -5.87 16 16 C 0.11 1.91 5.31 -4.97 -0.03 1.88 16 17 C 0.11 1.77 5.86 -82.20 -0.48 1.29 16 18 C -0.20 -3.54 9.57 -39.98 -0.38 -3.92 16 19 C -0.09 -1.50 10.66 -39.09 -0.42 -1.91 16 20 C -0.07 -1.13 7.10 -81.99 -0.58 -1.71 16 21 C 0.56 8.03 8.30 34.06 0.28 8.31 16 22 O -0.52 -8.73 17.67 -19.36 -0.34 -9.07 16 23 O -0.52 -5.51 13.44 -41.01 -0.55 -6.06 16 24 N -0.52 -7.53 6.07 -5.82 -0.04 -7.56 16 25 H 0.42 5.04 8.96 -40.82 -0.37 4.67 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.65 6.61 -51.93 -0.34 0.31 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.19 6.68 -51.93 -0.35 0.85 16 35 H 0.06 1.13 6.14 -51.93 -0.32 0.81 16 36 H 0.05 0.78 6.32 -51.93 -0.33 0.46 16 37 H 0.03 0.66 6.02 -51.93 -0.31 0.34 16 38 H 0.03 0.76 5.53 -51.93 -0.29 0.47 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.08 1.54 6.60 -51.93 -0.34 1.20 16 41 H 0.06 0.91 7.86 -51.93 -0.41 0.51 16 42 H 0.15 2.97 8.06 -52.49 -0.42 2.55 16 43 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.41 2.34 9.11 45.56 0.42 2.76 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -30.48 355.85 -8.21 -38.69 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.93 Total: 8.62 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.73 Total: -10.04 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.37 Total: -43.79 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.89 Total: -15.13 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.65 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.48 -8.21 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833484327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.897 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds