Wall clock time and date at job start Tue Mar 31 2020 07:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 C 1.53000 * 109.46947 * 119.99906 * 2 1 3 5 5 C 1.52994 * 109.47270 * 65.00100 * 4 2 1 6 6 N 1.46903 * 109.46868 * 178.04559 * 5 4 2 7 7 C 1.46907 * 110.99935 * 287.91573 * 6 5 4 8 8 C 1.50694 * 109.47314 * 299.18122 * 7 6 5 9 9 H 1.08001 * 120.00163 * 4.63333 * 8 7 6 10 10 C 1.37881 * 120.00173 * 184.63571 * 8 7 6 11 11 N 1.31513 * 119.99921 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99752 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47037 * 89.99951 * 12 10 8 14 14 H 1.48495 * 109.47332 * 210.00171 * 12 10 8 15 15 H 1.48499 * 109.47309 * 330.00395 * 12 10 8 16 16 C 1.46905 * 110.99829 * 163.96649 * 6 5 4 17 17 C 1.50703 * 109.46988 * 189.99787 * 16 6 5 18 18 C 1.35484 * 125.50653 * 264.97235 * 17 16 6 19 19 C 1.39803 * 107.83883 * 180.02562 * 18 17 16 20 20 C 1.37989 * 106.97002 * 359.73924 * 19 18 17 21 21 C 1.46494 * 126.26735 * 180.25726 * 20 19 18 22 22 O 1.21623 * 119.99239 * 0.18720 * 21 20 19 23 23 O 1.34890 * 120.00557 * 180.19215 * 21 20 19 24 24 N 1.34956 * 125.50379 * 85.00332 * 17 16 6 25 25 H 0.97005 * 125.64047 * 359.96943 * 24 17 16 26 26 H 1.08997 * 109.47149 * 299.99633 * 1 2 3 27 27 H 1.08994 * 109.47193 * 60.00770 * 1 2 3 28 28 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46920 * 239.99617 * 2 1 3 30 30 H 1.09000 * 109.46778 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46651 * 300.00048 * 3 2 1 32 32 H 1.08993 * 109.47235 * 59.99853 * 3 2 1 33 33 H 1.08993 * 109.47099 * 304.99837 * 4 2 1 34 34 H 1.09005 * 109.46939 * 185.00229 * 4 2 1 35 35 H 1.09007 * 109.47014 * 58.05039 * 5 4 2 36 36 H 1.08995 * 109.47528 * 298.04427 * 5 4 2 37 37 H 1.08991 * 109.46532 * 59.18459 * 7 6 5 38 38 H 1.09007 * 109.46586 * 179.18381 * 7 6 5 39 39 H 0.96998 * 119.99526 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47006 * 69.99825 * 16 6 5 41 41 H 1.08996 * 109.47013 * 309.99614 * 16 6 5 42 42 H 1.07998 * 126.08439 * 0.05843 * 18 17 16 43 43 H 1.08004 * 126.51405 * 180.02562 * 19 18 17 44 44 H 0.96698 * 117.00436 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 7 2.1650 -2.8978 2.3645 7 6 3.6215 -3.0630 2.2675 8 6 3.9541 -3.8811 1.0465 9 1 3.1701 -4.1790 0.3660 10 6 5.2593 -4.2496 0.7981 11 7 5.5496 -4.9632 -0.2678 12 14 6.6154 -3.7340 1.9747 13 1 6.7830 -4.7727 3.0226 14 1 7.8878 -3.5769 1.2254 15 1 6.2535 -2.4423 2.6117 16 6 1.4992 -4.1945 2.5474 17 6 1.8843 -4.7727 3.8847 18 6 2.8873 -5.6577 4.0999 19 6 2.9189 -5.9450 5.4678 20 6 1.9149 -5.2048 6.0580 21 6 1.5779 -5.1830 7.4835 22 8 2.2130 -5.8606 8.2688 23 8 0.5634 -4.4115 7.9251 24 7 1.2854 -4.4931 5.0613 25 1 0.5378 -3.8875 5.1851 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2952 35 1 2.0412 -2.6463 0.2824 36 1 0.5482 -2.2736 1.1771 37 1 4.0936 -2.0838 2.1884 38 1 3.9893 -3.5730 3.1579 39 1 6.4679 -5.2221 -0.4427 40 1 1.8073 -4.8761 1.7545 41 1 0.4187 -4.0568 2.5087 42 1 3.5458 -6.0680 3.3486 43 1 3.6024 -6.6150 5.9681 44 1 0.3782 -4.4304 8.8740 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833484327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:33 Heat of formation + Delta-G solvation = -82.492224 kcal Electronic energy + Delta-G solvation = -24039.440556 eV Core-core repulsion = 20569.970074 eV Total energy + Delta-G solvation = -3469.470481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45129 -40.66786 -39.03450 -37.09412 -36.72993 -34.47296 -32.14270 -31.84564 -30.26012 -29.00905 -27.92708 -26.41367 -24.82037 -23.84811 -21.78468 -21.36825 -20.99136 -20.67722 -19.52234 -18.95138 -18.43159 -16.96798 -16.79561 -16.58223 -16.11476 -15.79452 -15.62376 -14.87808 -14.83707 -14.67925 -14.49023 -14.18880 -14.13039 -14.07012 -13.66210 -13.37846 -13.20512 -12.96032 -12.81145 -12.63625 -12.54393 -12.42450 -12.14306 -12.05352 -11.90933 -11.85044 -11.67142 -11.40721 -11.33686 -11.16653 -10.71469 -9.97819 -9.28032 -8.91904 -8.25917 -6.26799 0.17774 1.34826 1.38295 1.46317 1.61220 1.88880 2.13719 2.33748 2.36276 3.11290 3.35270 3.97602 4.06307 4.09734 4.17332 4.21563 4.33954 4.40634 4.51872 4.64297 4.70760 4.85146 4.87068 4.90029 4.96301 5.00512 5.04516 5.11064 5.13068 5.21287 5.27748 5.29183 5.30729 5.43045 5.50095 5.53268 5.59748 5.66169 5.76923 5.94638 6.13972 6.36658 6.39958 6.54603 6.78639 6.95375 7.38986 8.89623 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.005289 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.227882 B = 5292.605396 C = 7144.831966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.097 4.097 5 C 0.060 3.940 6 N -0.525 5.525 7 C 0.161 3.839 8 C -0.529 4.529 9 H 0.046 0.954 10 C 0.024 3.976 11 N -0.943 5.943 12 Si 0.925 3.075 13 H -0.269 1.269 14 H -0.289 1.289 15 H -0.254 1.254 16 C 0.117 3.883 17 C 0.102 3.898 18 C -0.218 4.218 19 C -0.106 4.106 20 C -0.066 4.066 21 C 0.569 3.431 22 O -0.544 6.544 23 O -0.507 6.507 24 N -0.498 5.498 25 H 0.434 0.566 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.021 0.979 36 H 0.083 0.917 37 H 0.021 0.979 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.151 0.849 44 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.261 7.581 9.373 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.135 4.135 5 C -0.068 4.068 6 N -0.248 5.248 7 C 0.034 3.966 8 C -0.568 4.568 9 H 0.064 0.936 10 C -0.175 4.175 11 N -0.584 5.584 12 Si 0.751 3.249 13 H -0.194 1.194 14 H -0.215 1.215 15 H -0.178 1.178 16 C -0.012 4.012 17 C -0.020 4.020 18 C -0.242 4.242 19 C -0.132 4.132 20 C -0.177 4.177 21 C 0.415 3.585 22 O -0.436 6.436 23 O -0.322 6.322 24 N -0.094 5.094 25 H 0.275 0.725 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.169 0.831 44 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -13.146 7.746 9.595 18.025 hybrid contribution 1.183 -0.612 -0.093 1.335 sum -11.963 7.133 9.502 16.861 Atomic orbital electron populations 1.21819 0.93848 1.01864 1.02172 1.21079 0.96995 0.96306 0.97236 1.21790 1.00399 0.95423 1.02295 1.21470 0.99777 0.94086 0.98131 1.22098 0.99038 0.94274 0.91347 1.62525 1.05035 1.17956 1.39259 1.20008 0.86425 0.95387 0.94795 1.21754 0.93550 1.32739 1.08741 0.93600 1.25605 1.00971 0.94630 0.96274 1.70042 1.19932 1.39602 1.28796 0.86032 0.79069 0.80177 0.79661 1.19435 1.21498 1.17798 1.20608 0.99176 0.91358 0.90050 1.20351 0.95693 0.98180 0.87756 1.20818 1.02295 1.04871 0.96258 1.21451 0.97875 1.00327 0.93568 1.19169 1.03993 1.08225 0.86292 1.19258 0.76922 0.75686 0.86619 1.90930 1.52713 1.43408 1.56519 1.84536 1.49211 1.63047 1.35406 1.41599 1.27969 1.34988 1.04861 0.72535 0.91848 0.92150 0.92763 0.93110 0.93890 0.91789 0.91878 0.91059 0.94394 0.96096 0.89829 0.96055 0.95405 0.92818 0.93074 0.87938 0.85395 0.83130 0.70114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.95 71.98 0.64 -2.18 16 2 C -0.10 -2.47 2.92 -10.79 -0.03 -2.50 16 3 C -0.14 -3.14 9.19 71.98 0.66 -2.47 16 4 C -0.10 -2.91 4.76 30.59 0.15 -2.77 16 5 C 0.06 1.99 4.51 86.30 0.39 2.38 16 6 N -0.52 -18.93 4.66 -905.35 -4.22 -23.15 16 7 C 0.16 7.22 3.82 85.55 0.33 7.55 16 8 C -0.53 -27.95 7.89 25.60 0.20 -27.75 16 9 H 0.05 2.66 6.20 -2.91 -0.02 2.64 16 10 C 0.02 1.32 5.47 84.66 0.46 1.78 16 11 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 12 Si 0.93 43.97 27.38 68.60 1.88 45.85 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 15 H -0.25 -11.49 6.68 99.48 0.66 -10.83 16 16 C 0.12 3.83 5.31 85.56 0.45 4.29 16 17 C 0.10 3.31 5.86 41.44 0.24 3.55 16 18 C -0.22 -7.96 9.57 22.01 0.21 -7.75 16 19 C -0.11 -3.49 10.66 22.59 0.24 -3.25 16 20 C -0.07 -1.93 7.10 40.32 0.29 -1.64 16 21 C 0.57 14.81 8.30 69.97 0.58 15.39 16 22 O -0.54 -17.20 17.67 19.43 0.34 -16.86 16 23 O -0.51 -8.65 13.44 -58.04 -0.78 -9.43 16 24 N -0.50 -13.25 6.07 -172.32 -1.05 -14.30 16 25 H 0.43 8.82 8.96 -92.70 -0.83 7.99 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.11 6.61 -2.39 -0.02 1.10 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.35 6.68 -2.38 -0.02 1.33 16 35 H 0.02 0.85 6.14 -2.38 -0.01 0.84 16 36 H 0.08 2.28 6.32 -2.39 -0.02 2.26 16 37 H 0.02 1.00 6.02 -2.39 -0.01 0.98 16 38 H 0.03 1.29 5.53 -2.38 -0.01 1.28 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.05 2.01 6.60 -2.39 -0.02 2.00 16 41 H 0.10 2.60 7.86 -2.39 -0.02 2.58 16 42 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 43 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 44 H 0.44 3.10 9.11 -74.06 -0.67 2.42 16 Total: -1.00 -67.65 355.85 0.77 -66.88 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.52 Total: 23.04 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 4.82 Total: -15.38 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -4.96 Total: -94.11 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.44 Total: -26.29 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -67.65 0.77 -66.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833484327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.610 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds