Wall clock time and date at job start Tue Mar 31 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08994 * 109.46979 * 106.58417 * 3 2 1 5 5 N 1.46496 * 109.46835 * 226.58833 * 3 2 1 6 6 C 1.34777 * 119.99901 * 274.99481 * 5 3 2 7 7 O 1.21589 * 120.00170 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00362 * 180.02562 * 6 5 3 9 9 C 1.46500 * 120.00341 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47033 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47189 * 60.00068 * 10 9 8 12 12 C 1.52996 * 109.47729 * 299.99804 * 10 9 8 13 13 C 1.50709 * 109.47054 * 179.97438 * 10 9 8 14 14 H 1.07993 * 119.99859 * 4.92660 * 13 10 9 15 15 C 1.37875 * 119.99722 * 184.92114 * 13 10 9 16 16 N 1.31510 * 120.00482 * 351.63580 * 15 13 10 17 17 Si 1.86803 * 119.99441 * 171.63530 * 15 13 10 18 18 H 1.48494 * 109.47339 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46806 * 239.99749 * 17 15 13 20 20 H 1.48501 * 109.47140 * 120.00017 * 17 15 13 21 21 C 1.53000 * 109.47059 * 346.58775 * 3 2 1 22 22 H 1.08999 * 110.33128 * 185.70230 * 21 3 2 23 23 C 1.54473 * 110.37282 * 63.45009 * 21 3 2 24 24 C 1.54510 * 104.06211 * 217.18968 * 23 21 3 25 25 C 1.54476 * 104.06404 * 359.97438 * 24 23 21 26 26 O 1.44424 * 110.37179 * 307.94813 * 21 3 2 27 27 H 4.18737 * 15.03852 * 0.02562 * 4 2 1 28 28 H 0.97000 * 120.00268 * 95.00176 * 5 3 2 29 29 H 0.97000 * 119.99806 * 0.02562 * 8 6 5 30 30 H 1.09002 * 109.47336 * 60.00027 * 9 8 6 31 31 H 1.08996 * 109.47180 * 299.99959 * 9 8 6 32 32 H 1.08995 * 109.46960 * 172.91802 * 11 10 9 33 33 H 1.08995 * 109.46471 * 292.91569 * 11 10 9 34 34 H 1.08997 * 109.46636 * 52.91652 * 11 10 9 35 35 H 1.09003 * 109.47060 * 307.36067 * 12 10 9 36 36 H 1.09002 * 109.46833 * 67.35360 * 12 10 9 37 37 H 1.08992 * 109.47930 * 187.36057 * 12 10 9 38 38 H 0.96995 * 120.00079 * 5.71657 * 16 15 13 39 39 H 1.08997 * 110.51601 * 335.83049 * 23 21 3 40 40 H 1.09001 * 110.51287 * 98.40734 * 23 21 3 41 41 H 1.08999 * 110.51171 * 118.64852 * 24 23 21 42 42 H 1.09006 * 110.51346 * 241.21509 * 24 23 21 43 43 H 1.09000 * 110.37144 * 142.80970 * 25 24 23 44 44 H 1.08998 * 110.37689 * 265.14775 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.2941 -0.9849 5 7 3.1339 0.9501 1.0034 6 6 3.2621 2.2547 0.6904 7 8 2.9724 2.6438 -0.4246 8 7 3.7114 3.1282 1.6132 9 6 3.8502 4.5464 1.2732 10 6 4.3742 5.3134 2.4889 11 6 5.7372 4.7512 2.8979 12 6 3.3905 5.1615 3.6508 13 6 4.5176 6.7722 2.1389 14 1 4.1864 7.1315 1.1759 15 6 5.0716 7.6480 3.0483 16 7 5.3231 7.2495 4.2760 17 14 5.4650 9.4009 2.5363 18 1 5.0894 9.5971 1.1131 19 1 6.9192 9.6510 2.7040 20 1 4.6987 10.3484 3.3851 21 6 3.1567 -1.4023 0.3346 22 1 4.2418 -1.3958 0.4376 23 6 2.7261 -2.4060 -0.7578 24 6 2.4062 -3.6989 0.0254 25 6 2.6819 -3.3235 1.4982 26 8 2.5395 -1.8859 1.5474 27 1 -1.0499 0.0004 0.0004 28 1 3.3648 0.6398 1.8929 29 1 3.9428 2.8178 2.5026 30 1 2.8791 4.9470 0.9822 31 1 4.5507 4.6546 0.4452 32 1 6.1674 5.3752 3.6812 33 1 5.6138 3.7343 3.2702 34 1 6.4013 4.7436 2.0336 35 1 2.3903 5.4400 3.3187 36 1 3.3855 4.1255 3.9895 37 1 3.6946 5.8107 4.4717 38 1 5.1969 6.3190 4.5193 39 1 1.8392 -2.0460 -1.2792 40 1 3.5399 -2.5756 -1.4629 41 1 1.3611 -3.9780 -0.1089 42 1 3.0610 -4.5102 -0.2929 43 1 1.9530 -3.7998 2.1540 44 1 3.6940 -3.6133 1.7807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838557572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:20 Heat of formation + Delta-G solvation = -19.136961 kcal Electronic energy + Delta-G solvation = -23878.534025 eV Core-core repulsion = 20411.810834 eV Total energy + Delta-G solvation = -3466.723191 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27092 -39.32611 -36.97333 -35.33969 -33.54569 -32.61778 -32.15864 -30.64811 -29.83258 -26.37004 -26.02251 -25.54166 -24.03956 -22.59395 -21.70833 -20.60096 -18.91252 -18.55987 -18.29162 -16.96656 -16.57072 -16.26644 -15.84874 -15.49011 -14.98584 -14.33914 -14.07908 -14.03181 -13.73449 -13.67399 -12.95291 -12.86192 -12.67651 -12.53978 -12.13685 -11.84116 -11.63319 -11.51916 -11.23637 -11.07522 -10.90946 -10.61405 -10.59659 -10.56722 -10.24852 -10.11215 -10.06189 -9.86067 -9.81935 -9.48471 -9.22587 -8.53481 -8.33160 -8.17791 -6.24841 -4.08630 2.47853 2.87406 3.34627 3.45786 3.47590 3.48818 3.58031 3.62676 4.17067 4.32811 4.37988 4.51869 4.54955 4.67287 4.79991 4.90953 5.09488 5.25535 5.30889 5.33925 5.44240 5.46106 5.60555 5.68880 5.94294 6.01370 6.22411 6.28620 6.42144 6.54287 6.59863 6.64091 6.72042 6.83527 6.96002 7.09900 7.12844 7.29581 7.52902 7.66603 7.68971 8.21651 8.39007 8.43639 8.86132 8.96526 9.61825 11.01488 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033703 B = 0.002934 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.586582 B = 9541.257488 C = 9809.799749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.182 4.182 3 C 0.284 3.716 4 H 0.119 0.881 5 N -0.743 5.743 6 C 0.700 3.300 7 O -0.595 6.595 8 N -0.733 5.733 9 C 0.158 3.842 10 C 0.041 3.959 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.585 4.585 14 H 0.053 0.947 15 C 0.026 3.974 16 N -0.918 5.918 17 Si 1.070 2.930 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.288 1.288 21 C 0.071 3.929 22 H 0.087 0.913 23 C -0.149 4.149 24 C -0.153 4.153 25 C 0.044 3.956 26 O -0.363 6.363 27 H 0.215 0.785 28 H 0.401 0.599 29 H 0.393 0.607 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.015 0.985 37 H 0.070 0.930 38 H 0.281 0.719 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -22.298 -5.677 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C 0.178 3.822 4 H 0.137 0.863 5 N -0.399 5.399 6 C 0.400 3.600 7 O -0.474 6.474 8 N -0.387 5.387 9 C 0.036 3.964 10 C 0.040 3.960 11 C -0.203 4.203 12 C -0.202 4.202 13 C -0.624 4.624 14 H 0.071 0.929 15 C -0.178 4.178 16 N -0.559 5.559 17 Si 0.899 3.101 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.215 1.215 21 C 0.013 3.987 22 H 0.104 0.896 23 C -0.187 4.187 24 C -0.190 4.190 25 C -0.033 4.033 26 O -0.282 6.282 27 H 0.231 0.769 28 H 0.235 0.765 29 H 0.227 0.773 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.941 -20.294 -5.962 21.515 hybrid contribution -0.551 -1.923 0.134 2.005 sum -4.491 -22.217 -5.828 23.404 Atomic orbital electron populations 1.24812 0.95796 1.00129 1.00307 1.23161 0.94438 1.00308 1.00436 1.17635 0.83914 0.86547 0.94086 0.86332 1.45097 1.72063 1.06537 1.16180 1.16061 0.78459 0.80501 0.84998 1.90893 1.57423 1.77858 1.21204 1.45487 1.69579 1.09302 1.14338 1.21476 1.00155 0.75931 0.98881 1.18539 0.91455 0.95465 0.90513 1.22030 0.99426 0.97324 1.01492 1.22075 0.99295 0.97703 1.01078 1.21805 1.44403 0.92010 1.04165 0.92852 1.25665 0.93749 1.05193 0.93201 1.70812 1.47570 1.20062 1.17457 0.83534 0.76688 0.74820 0.75080 1.21495 1.21391 1.21476 1.23301 0.97496 0.92410 0.85505 0.89570 1.22948 1.03007 0.94561 0.98160 1.22905 1.02833 0.97888 0.95406 1.23427 1.01369 0.81857 0.96612 1.89231 1.79494 1.19575 1.39883 0.76861 0.76495 0.77256 0.92818 0.92642 0.90939 0.96515 0.94405 0.94516 0.96647 0.91117 0.90254 0.89908 0.89889 0.90591 0.90406 0.89048 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.18 -2.54 11.10 -37.12 -0.41 -2.95 16 3 C 0.28 3.62 2.38 -70.72 -0.17 3.45 16 4 H 0.12 1.57 7.58 -51.93 -0.39 1.18 16 5 N -0.74 -10.55 5.04 -61.44 -0.31 -10.86 16 6 C 0.70 12.88 8.51 -86.92 -0.74 12.14 16 7 O -0.60 -13.18 16.01 5.29 0.08 -13.09 16 8 N -0.73 -13.50 5.04 -65.23 -0.33 -13.83 16 9 C 0.16 3.48 4.50 -4.04 -0.02 3.46 16 10 C 0.04 0.97 0.50 -155.66 -0.08 0.89 16 11 C -0.14 -3.24 7.85 37.16 0.29 -2.94 16 12 C -0.14 -3.25 7.91 37.16 0.29 -2.96 16 13 C -0.59 -15.81 8.00 -34.44 -0.28 -16.08 16 14 H 0.05 1.47 7.76 -52.49 -0.41 1.07 16 15 C 0.03 0.71 5.07 -17.82 -0.09 0.61 16 16 N -0.92 -26.08 12.17 55.43 0.67 -25.41 16 17 Si 1.07 24.80 29.91 -169.99 -5.08 19.71 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.07 0.68 3.10 -25.96 -0.08 0.60 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.15 -1.12 6.46 -25.17 -0.16 -1.28 16 24 C -0.15 -0.95 7.09 -25.16 -0.18 -1.13 16 25 C 0.04 0.32 7.63 37.93 0.29 0.61 16 26 O -0.36 -3.86 10.69 -35.23 -0.38 -4.24 16 27 H 0.21 1.96 7.80 -54.09 -0.42 1.54 16 28 H 0.40 4.90 8.54 -40.82 -0.35 4.56 16 29 H 0.39 6.47 6.30 -40.82 -0.26 6.21 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.79 5.16 -51.93 -0.27 1.52 16 33 H 0.02 0.31 7.04 -51.93 -0.37 -0.06 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.01 0.29 7.05 -51.93 -0.37 -0.08 16 37 H 0.07 1.76 5.30 -51.93 -0.28 1.48 16 38 H 0.28 7.72 3.59 -40.82 -0.15 7.57 16 39 H 0.08 0.70 6.98 -51.93 -0.36 0.33 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -32.58 354.06 -7.40 -39.98 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.64 Total: 9.86 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.76 Total: -7.47 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.04 Total: -50.10 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.29 Total: -17.33 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.58 -7.40 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.846 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds