Wall clock time and date at job start Tue Mar 31 2020 07:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08994 * 109.46979 * 106.58417 * 3 2 1 5 5 N 1.46496 * 109.46835 * 226.58833 * 3 2 1 6 6 C 1.34777 * 119.99901 * 274.99481 * 5 3 2 7 7 O 1.21589 * 120.00170 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00362 * 180.02562 * 6 5 3 9 9 C 1.46500 * 120.00341 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47033 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47189 * 60.00068 * 10 9 8 12 12 C 1.52996 * 109.47729 * 299.99804 * 10 9 8 13 13 C 1.50709 * 109.47054 * 179.97438 * 10 9 8 14 14 H 1.07993 * 119.99859 * 4.92660 * 13 10 9 15 15 C 1.37875 * 119.99722 * 184.92114 * 13 10 9 16 16 N 1.31510 * 120.00482 * 351.63580 * 15 13 10 17 17 Si 1.86803 * 119.99441 * 171.63530 * 15 13 10 18 18 H 1.48494 * 109.47339 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46806 * 239.99749 * 17 15 13 20 20 H 1.48501 * 109.47140 * 120.00017 * 17 15 13 21 21 C 1.53000 * 109.47059 * 346.58775 * 3 2 1 22 22 H 1.08999 * 110.33128 * 185.70230 * 21 3 2 23 23 C 1.54473 * 110.37282 * 63.45009 * 21 3 2 24 24 C 1.54510 * 104.06211 * 217.18968 * 23 21 3 25 25 C 1.54476 * 104.06404 * 359.97438 * 24 23 21 26 26 O 1.44424 * 110.37179 * 307.94813 * 21 3 2 27 27 H 4.18737 * 15.03852 * 0.02562 * 4 2 1 28 28 H 0.97000 * 120.00268 * 95.00176 * 5 3 2 29 29 H 0.97000 * 119.99806 * 0.02562 * 8 6 5 30 30 H 1.09002 * 109.47336 * 60.00027 * 9 8 6 31 31 H 1.08996 * 109.47180 * 299.99959 * 9 8 6 32 32 H 1.08995 * 109.46960 * 172.91802 * 11 10 9 33 33 H 1.08995 * 109.46471 * 292.91569 * 11 10 9 34 34 H 1.08997 * 109.46636 * 52.91652 * 11 10 9 35 35 H 1.09003 * 109.47060 * 307.36067 * 12 10 9 36 36 H 1.09002 * 109.46833 * 67.35360 * 12 10 9 37 37 H 1.08992 * 109.47930 * 187.36057 * 12 10 9 38 38 H 0.96995 * 120.00079 * 5.71657 * 16 15 13 39 39 H 1.08997 * 110.51601 * 335.83049 * 23 21 3 40 40 H 1.09001 * 110.51287 * 98.40734 * 23 21 3 41 41 H 1.08999 * 110.51171 * 118.64852 * 24 23 21 42 42 H 1.09006 * 110.51346 * 241.21509 * 24 23 21 43 43 H 1.09000 * 110.37144 * 142.80970 * 25 24 23 44 44 H 1.08998 * 110.37689 * 265.14775 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0092 0.2941 -0.9849 5 7 3.1339 0.9501 1.0034 6 6 3.2621 2.2547 0.6904 7 8 2.9724 2.6438 -0.4246 8 7 3.7114 3.1282 1.6132 9 6 3.8502 4.5464 1.2732 10 6 4.3742 5.3134 2.4889 11 6 5.7372 4.7512 2.8979 12 6 3.3905 5.1615 3.6508 13 6 4.5176 6.7722 2.1389 14 1 4.1864 7.1315 1.1759 15 6 5.0716 7.6480 3.0483 16 7 5.3231 7.2495 4.2760 17 14 5.4650 9.4009 2.5363 18 1 5.0894 9.5971 1.1131 19 1 6.9192 9.6510 2.7040 20 1 4.6987 10.3484 3.3851 21 6 3.1567 -1.4023 0.3346 22 1 4.2418 -1.3958 0.4376 23 6 2.7261 -2.4060 -0.7578 24 6 2.4062 -3.6989 0.0254 25 6 2.6819 -3.3235 1.4982 26 8 2.5395 -1.8859 1.5474 27 1 -1.0499 0.0004 0.0004 28 1 3.3648 0.6398 1.8929 29 1 3.9428 2.8178 2.5026 30 1 2.8791 4.9470 0.9822 31 1 4.5507 4.6546 0.4452 32 1 6.1674 5.3752 3.6812 33 1 5.6138 3.7343 3.2702 34 1 6.4013 4.7436 2.0336 35 1 2.3903 5.4400 3.3187 36 1 3.3855 4.1255 3.9895 37 1 3.6946 5.8107 4.4717 38 1 5.1969 6.3190 4.5193 39 1 1.8392 -2.0460 -1.2792 40 1 3.5399 -2.5756 -1.4629 41 1 1.3611 -3.9780 -0.1089 42 1 3.0610 -4.5102 -0.2929 43 1 1.9530 -3.7998 2.1540 44 1 3.6940 -3.6133 1.7807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838557572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:19 Heat of formation + Delta-G solvation = -40.872656 kcal Electronic energy + Delta-G solvation = -23879.476555 eV Core-core repulsion = 20411.810834 eV Total energy + Delta-G solvation = -3467.665721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41067 -40.38080 -38.72779 -36.52627 -35.27777 -33.67495 -32.93834 -32.30880 -30.82453 -27.89601 -27.85962 -26.97602 -25.70677 -23.29398 -22.56963 -21.85322 -20.76698 -19.90711 -19.45136 -18.47046 -17.75564 -17.20970 -16.66607 -16.62258 -16.24256 -15.87660 -15.62684 -15.42506 -14.99992 -14.63710 -14.49896 -14.41341 -14.28640 -13.72977 -13.35925 -13.20961 -12.76681 -12.68826 -12.55441 -12.50370 -12.41946 -12.17497 -11.92515 -11.75006 -11.71400 -11.59578 -11.40494 -11.26111 -11.15521 -10.76573 -10.58770 -10.52383 -10.23796 -9.87910 -8.38396 -6.23626 1.31473 1.57236 1.63505 1.81126 1.87610 2.05893 2.18096 2.60742 2.84118 3.24986 3.28053 3.36594 3.63104 3.80184 3.99770 4.14796 4.18062 4.29843 4.35253 4.41350 4.45392 4.48061 4.73295 4.81942 4.83268 4.86186 4.88547 4.97529 4.98925 5.03646 5.09104 5.15962 5.16739 5.20975 5.33405 5.45442 5.64734 5.83199 5.83520 5.93658 6.18186 6.33261 6.66485 6.75463 7.03715 7.49972 7.53303 8.89719 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033703 B = 0.002934 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.586582 B = 9541.257488 C = 9809.799749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.217 4.217 3 C 0.278 3.722 4 H 0.109 0.891 5 N -0.725 5.725 6 C 0.700 3.300 7 O -0.635 6.635 8 N -0.725 5.725 9 C 0.177 3.823 10 C 0.036 3.964 11 C -0.135 4.135 12 C -0.134 4.134 13 C -0.604 4.604 14 H 0.037 0.963 15 C -0.014 4.014 16 N -0.938 5.938 17 Si 1.108 2.892 18 H -0.281 1.281 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.077 3.923 22 H 0.101 0.899 23 C -0.148 4.148 24 C -0.147 4.147 25 C 0.038 3.962 26 O -0.388 6.388 27 H 0.243 0.757 28 H 0.412 0.588 29 H 0.405 0.595 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.280 0.720 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -24.274 -5.521 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.219 4.219 3 C 0.173 3.827 4 H 0.126 0.874 5 N -0.380 5.380 6 C 0.400 3.600 7 O -0.516 6.516 8 N -0.380 5.380 9 C 0.052 3.948 10 C 0.035 3.965 11 C -0.193 4.193 12 C -0.192 4.192 13 C -0.642 4.642 14 H 0.055 0.945 15 C -0.214 4.214 16 N -0.579 5.579 17 Si 0.932 3.068 18 H -0.206 1.206 19 H -0.206 1.206 20 H -0.209 1.209 21 C 0.019 3.981 22 H 0.119 0.881 23 C -0.186 4.186 24 C -0.185 4.185 25 C -0.039 4.039 26 O -0.308 6.308 27 H 0.259 0.741 28 H 0.249 0.751 29 H 0.242 0.758 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.849 -22.338 -5.774 23.391 hybrid contribution -0.653 -1.393 0.073 1.540 sum -4.501 -23.731 -5.701 24.818 Atomic orbital electron populations 1.25648 0.96807 0.99107 0.99088 1.23611 0.95322 1.01364 1.01597 1.17864 0.83741 0.87885 0.93222 0.87353 1.44957 1.70843 1.05107 1.17129 1.16164 0.78042 0.81575 0.84226 1.90868 1.59048 1.78839 1.22886 1.45168 1.69857 1.07984 1.15004 1.20996 0.98390 0.77728 0.97653 1.18533 0.92522 0.94094 0.91311 1.21881 0.98176 0.98693 1.00533 1.21926 0.98287 0.99202 0.99774 1.22110 1.44380 0.94242 1.03502 0.94467 1.26750 0.93435 1.08304 0.92938 1.70871 1.48656 1.20358 1.18061 0.83022 0.76937 0.71550 0.75246 1.20650 1.20562 1.20925 1.23296 0.97950 0.90740 0.86142 0.88127 1.22969 1.03138 0.94527 0.97950 1.22901 1.03350 0.97745 0.94455 1.23637 1.02493 0.80238 0.97486 1.89196 1.79869 1.21516 1.40218 0.74073 0.75102 0.75830 0.94917 0.94183 0.93180 0.93123 0.94867 0.95387 0.93369 0.93325 0.90430 0.91173 0.88045 0.90682 0.88279 0.88421 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.59 19.25 74.32 1.43 -3.16 16 2 C -0.22 -5.92 11.10 31.13 0.35 -5.58 16 3 C 0.28 6.87 2.38 43.19 0.10 6.97 16 4 H 0.11 2.88 7.58 -2.39 -0.02 2.86 16 5 N -0.72 -19.75 5.04 -466.57 -2.35 -22.10 16 6 C 0.70 25.36 8.51 179.06 1.52 26.88 16 7 O -0.63 -28.34 16.01 -4.00 -0.06 -28.40 16 8 N -0.73 -25.99 5.04 -478.55 -2.41 -28.40 16 9 C 0.18 7.79 4.50 86.38 0.39 8.18 16 10 C 0.04 1.70 0.50 -52.92 -0.03 1.67 16 11 C -0.13 -5.90 7.85 71.98 0.57 -5.34 16 12 C -0.13 -5.98 7.91 71.98 0.57 -5.41 16 13 C -0.60 -33.01 8.00 25.60 0.20 -32.81 16 14 H 0.04 2.10 7.76 -2.91 -0.02 2.08 16 15 C -0.01 -0.79 5.07 84.65 0.43 -0.36 16 16 N -0.94 -53.39 12.17 21.45 0.26 -53.13 16 17 Si 1.11 50.00 29.91 68.60 2.05 52.05 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 C 0.08 1.34 3.10 31.09 0.10 1.43 16 22 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 23 C -0.15 -1.94 6.46 31.61 0.20 -1.73 16 24 C -0.15 -1.46 7.09 31.61 0.22 -1.24 16 25 C 0.04 0.46 7.63 72.48 0.55 1.01 16 26 O -0.39 -7.54 10.69 -148.98 -1.59 -9.14 16 27 H 0.24 3.96 7.80 -4.42 -0.03 3.92 16 28 H 0.41 9.32 8.54 -92.71 -0.79 8.53 16 29 H 0.41 12.44 6.30 -92.71 -0.58 11.86 16 30 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 2.44 5.16 -2.39 -0.01 2.43 16 33 H 0.05 1.82 7.04 -2.39 -0.02 1.81 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.79 7.05 -2.39 -0.02 1.77 16 37 H 0.05 2.40 5.30 -2.39 -0.01 2.39 16 38 H 0.28 15.42 3.59 -92.71 -0.33 15.09 16 39 H 0.07 1.11 6.98 -2.39 -0.02 1.09 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -70.69 354.06 2.57 -68.12 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.07 Total: 30.48 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 6.61 Total: -9.48 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.51 Total: -103.64 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.66 Total: -37.54 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -70.69 2.57 -68.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.252 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds