Wall clock time and date at job start Tue Mar 31 2020 07:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 5 5 N 1.46496 * 109.47036 * 10.26080 * 3 2 1 6 6 C 1.34783 * 120.00237 * 85.00265 * 5 3 2 7 7 O 1.21588 * 119.99613 * 359.97438 * 6 5 3 8 8 N 1.34767 * 120.00233 * 179.97438 * 6 5 3 9 9 C 1.46502 * 120.00465 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47560 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46754 * 299.99653 * 10 9 8 12 12 C 1.52993 * 109.47115 * 59.99994 * 10 9 8 13 13 C 1.50702 * 109.46867 * 180.02562 * 10 9 8 14 14 H 1.08000 * 119.99988 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99654 * 180.02562 * 13 10 9 16 16 N 1.31508 * 119.99887 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99871 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47275 * 89.99599 * 17 15 13 19 19 H 1.48505 * 109.47116 * 209.99868 * 17 15 13 20 20 H 1.48504 * 109.46948 * 329.99379 * 17 15 13 21 21 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 22 22 H 1.09001 * 109.86977 * 174.30230 * 21 3 2 23 23 C 1.54103 * 109.87593 * 295.30642 * 21 3 2 24 24 C 1.54812 * 104.18584 * 121.45710 * 23 21 3 25 25 C 1.55001 * 102.09421 * 20.87914 * 24 23 21 26 26 O 1.43748 * 109.87918 * 53.29329 * 21 3 2 27 27 H 4.18741 * 15.03726 * 0.02562 * 4 2 1 28 28 H 0.97002 * 120.00398 * 264.99875 * 5 3 2 29 29 H 0.97002 * 120.00402 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46743 * 300.00238 * 9 8 6 31 31 H 1.09002 * 109.46478 * 59.99625 * 9 8 6 32 32 H 1.09004 * 109.46800 * 60.00637 * 11 10 9 33 33 H 1.09005 * 109.46738 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47427 * 300.00067 * 11 10 9 35 35 H 1.09001 * 109.47168 * 59.99838 * 12 10 9 36 36 H 1.09005 * 109.47274 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47529 * 300.00029 * 12 10 9 38 38 H 0.97006 * 120.00055 * 179.97438 * 16 15 13 39 39 H 1.09011 * 110.48713 * 240.12877 * 23 21 3 40 40 H 1.08993 * 110.49331 * 2.64461 * 23 21 3 41 41 H 1.09005 * 110.90546 * 139.07412 * 24 23 21 42 42 H 1.09002 * 110.90658 * 262.67824 * 24 23 21 43 43 H 1.09000 * 110.61672 * 81.47589 * 25 24 23 44 44 H 1.08992 * 110.61683 * 204.47924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6649 -0.7843 5 7 3.1349 -1.3582 -0.2460 6 6 3.2639 -1.8096 -1.5094 7 8 2.9740 -1.0891 -2.4450 8 7 3.7141 -3.0595 -1.7358 9 6 3.8538 -3.5505 -3.1090 10 6 4.3789 -4.9873 -3.0861 11 6 5.7417 -5.0212 -2.3914 12 6 3.3955 -5.8776 -2.3239 13 6 4.5232 -5.4920 -4.4988 14 1 4.2656 -4.8520 -5.3298 15 6 4.9829 -6.7711 -4.7303 16 7 5.2960 -7.5504 -3.7184 17 14 5.1624 -7.3963 -6.4814 18 1 6.5249 -7.0827 -6.9818 19 1 4.9521 -8.8662 -6.5061 20 1 4.1527 -6.7372 -7.3483 21 6 3.1557 0.4881 1.3577 22 1 4.2410 0.3959 1.4008 23 6 2.7457 1.9576 1.5745 24 6 1.9065 1.9294 2.8751 25 6 2.3729 0.6062 3.5339 26 8 2.5572 -0.2857 2.4110 27 1 -1.0500 -0.0001 0.0009 28 1 3.3659 -1.9332 0.5003 29 1 3.9458 -3.6343 -0.9895 30 1 2.8829 -3.5267 -3.6038 31 1 4.5541 -2.9158 -3.6522 32 1 5.6377 -4.6561 -1.3696 33 1 6.1156 -6.0450 -2.3747 34 1 6.4423 -4.3869 -2.9345 35 1 2.4247 -5.8534 -2.8189 36 1 3.7698 -6.9012 -2.3072 37 1 3.2916 -5.5125 -1.3021 38 1 5.6191 -8.4505 -3.8813 39 1 3.6279 2.5849 1.7032 40 1 2.1445 2.3134 0.7379 41 1 2.1429 2.7840 3.5092 42 1 0.8405 1.8971 2.6496 43 1 3.3140 0.7522 4.0641 44 1 1.6071 0.2222 4.2078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838557575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:23 Heat of formation + Delta-G solvation = -25.057971 kcal Electronic energy + Delta-G solvation = -23865.448199 eV Core-core repulsion = 20398.468254 eV Total energy + Delta-G solvation = -3466.979945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24342 -39.23472 -36.56804 -35.16478 -33.28511 -32.58602 -32.07053 -30.83755 -29.90305 -26.20041 -25.67534 -25.36570 -24.34795 -22.56228 -21.71821 -20.52286 -18.78153 -18.46152 -18.06190 -16.93472 -16.32131 -15.82392 -15.68492 -15.33865 -14.90281 -14.68868 -14.08104 -13.92163 -13.68979 -13.58900 -12.96113 -12.81901 -12.67671 -12.14036 -12.08011 -11.78739 -11.51996 -11.34760 -11.15849 -11.14439 -10.83481 -10.66163 -10.57147 -10.34183 -10.25277 -10.17301 -9.89979 -9.73112 -9.58457 -9.26476 -9.13564 -8.74872 -8.38481 -8.17562 -5.98658 -4.08463 2.54496 2.91899 3.30836 3.37547 3.40111 3.44313 3.53062 3.66092 4.17666 4.39506 4.40993 4.45552 4.57354 4.71692 4.84734 4.94832 5.19478 5.28101 5.32522 5.35137 5.43996 5.52649 5.62346 5.73752 5.99889 6.25431 6.41219 6.49397 6.56020 6.65439 6.84384 6.88257 6.95750 7.07999 7.14235 7.34720 7.45876 7.60622 7.70778 7.73519 8.05573 8.16762 8.42173 8.51832 8.91410 9.06963 9.57097 11.02785 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.002929 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.398108 B = 9555.742829 C = 9811.844086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.278 3.722 4 H 0.117 0.883 5 N -0.743 5.743 6 C 0.699 3.301 7 O -0.598 6.598 8 N -0.731 5.731 9 C 0.151 3.849 10 C 0.056 3.944 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.074 3.926 22 H 0.086 0.914 23 C -0.149 4.149 24 C -0.152 4.152 25 C 0.047 3.953 26 O -0.366 6.366 27 H 0.214 0.786 28 H 0.401 0.599 29 H 0.394 0.606 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.006 0.994 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.006 0.994 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 16.209 15.621 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.172 3.828 4 H 0.135 0.865 5 N -0.399 5.399 6 C 0.399 3.601 7 O -0.477 6.477 8 N -0.385 5.385 9 C 0.028 3.972 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.015 3.985 22 H 0.104 0.896 23 C -0.187 4.187 24 C -0.190 4.190 25 C -0.030 4.030 26 O -0.284 6.284 27 H 0.231 0.769 28 H 0.235 0.765 29 H 0.229 0.771 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.770 16.413 14.721 22.558 hybrid contribution 0.089 -0.737 -0.228 0.777 sum -4.681 15.676 14.493 21.856 Atomic orbital electron populations 1.24789 0.95777 0.99313 1.01572 1.23212 0.94465 1.00907 0.99458 1.17810 0.83863 0.85035 0.96044 0.86536 1.45097 1.72020 1.15600 1.07151 1.16081 0.78488 0.82775 0.82753 1.90883 1.57604 1.57162 1.42001 1.45495 1.69319 1.12622 1.11049 1.21593 1.00027 0.96799 0.78825 1.18360 0.92153 0.87895 0.96048 1.21821 0.98626 1.03258 0.95043 1.21819 0.98173 1.03799 0.94983 1.20997 1.43744 0.98562 0.91040 0.92412 1.24877 0.95060 0.96654 0.96942 1.69808 1.44776 1.08243 1.29679 0.86572 0.78464 0.77852 0.84985 1.20731 1.21300 1.19904 1.23048 0.97669 0.90843 0.86896 0.89616 1.22940 1.00937 0.95644 0.99156 1.23103 1.01059 0.98449 0.96403 1.23584 1.00516 0.89174 0.89711 1.88979 1.82476 1.33785 1.23206 0.76938 0.76472 0.77100 0.92996 0.92917 0.97517 0.89666 0.95452 0.95477 0.89655 0.97514 0.93050 0.90004 0.89777 0.90159 0.90369 0.92045 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 19.25 29.55 0.57 -1.93 16 2 C -0.18 -2.50 11.41 -37.12 -0.42 -2.93 16 3 C 0.28 3.59 2.19 -70.72 -0.16 3.44 16 4 H 0.12 1.57 7.58 -51.93 -0.39 1.18 16 5 N -0.74 -10.78 5.04 -61.45 -0.31 -11.09 16 6 C 0.70 13.08 8.51 -86.92 -0.74 12.34 16 7 O -0.60 -13.38 16.01 5.29 0.08 -13.29 16 8 N -0.73 -13.75 4.96 -65.22 -0.32 -14.07 16 9 C 0.15 3.33 4.50 -4.04 -0.02 3.31 16 10 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 11 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 12 C -0.13 -3.01 8.08 37.15 0.30 -2.71 16 13 C -0.50 -13.45 8.01 -34.44 -0.28 -13.72 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 16 N -0.89 -23.90 9.35 55.43 0.52 -23.38 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.07 0.72 3.24 -26.16 -0.08 0.63 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 C -0.15 -1.10 6.28 -25.20 -0.16 -1.26 16 24 C -0.15 -1.00 7.16 -24.72 -0.18 -1.17 16 25 C 0.05 0.35 7.72 38.21 0.30 0.64 16 26 O -0.37 -3.91 10.47 -35.23 -0.37 -4.28 16 27 H 0.21 1.95 7.80 -54.09 -0.42 1.53 16 28 H 0.40 5.07 8.47 -40.82 -0.35 4.72 16 29 H 0.39 6.71 6.18 -40.82 -0.25 6.46 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 33 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 37 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 38 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -31.23 357.38 -7.67 -38.91 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.90 Total: 8.99 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.74 Total: -3.12 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.11 Total: -48.54 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.28 Total: -17.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.23 -7.67 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.848 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds