Wall clock time and date at job start Tue Mar 31 2020 07:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 5 5 N 1.46496 * 109.47036 * 10.26080 * 3 2 1 6 6 C 1.34783 * 120.00237 * 85.00265 * 5 3 2 7 7 O 1.21588 * 119.99613 * 359.97438 * 6 5 3 8 8 N 1.34767 * 120.00233 * 179.97438 * 6 5 3 9 9 C 1.46502 * 120.00465 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47560 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46754 * 299.99653 * 10 9 8 12 12 C 1.52993 * 109.47115 * 59.99994 * 10 9 8 13 13 C 1.50702 * 109.46867 * 180.02562 * 10 9 8 14 14 H 1.08000 * 119.99988 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99654 * 180.02562 * 13 10 9 16 16 N 1.31508 * 119.99887 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99871 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47275 * 89.99599 * 17 15 13 19 19 H 1.48505 * 109.47116 * 209.99868 * 17 15 13 20 20 H 1.48504 * 109.46948 * 329.99379 * 17 15 13 21 21 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 22 22 H 1.09001 * 109.86977 * 174.30230 * 21 3 2 23 23 C 1.54103 * 109.87593 * 295.30642 * 21 3 2 24 24 C 1.54812 * 104.18584 * 121.45710 * 23 21 3 25 25 C 1.55001 * 102.09421 * 20.87914 * 24 23 21 26 26 O 1.43748 * 109.87918 * 53.29329 * 21 3 2 27 27 H 4.18741 * 15.03726 * 0.02562 * 4 2 1 28 28 H 0.97002 * 120.00398 * 264.99875 * 5 3 2 29 29 H 0.97002 * 120.00402 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46743 * 300.00238 * 9 8 6 31 31 H 1.09002 * 109.46478 * 59.99625 * 9 8 6 32 32 H 1.09004 * 109.46800 * 60.00637 * 11 10 9 33 33 H 1.09005 * 109.46738 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47427 * 300.00067 * 11 10 9 35 35 H 1.09001 * 109.47168 * 59.99838 * 12 10 9 36 36 H 1.09005 * 109.47274 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47529 * 300.00029 * 12 10 9 38 38 H 0.97006 * 120.00055 * 179.97438 * 16 15 13 39 39 H 1.09011 * 110.48713 * 240.12877 * 23 21 3 40 40 H 1.08993 * 110.49331 * 2.64461 * 23 21 3 41 41 H 1.09005 * 110.90546 * 139.07412 * 24 23 21 42 42 H 1.09002 * 110.90658 * 262.67824 * 24 23 21 43 43 H 1.09000 * 110.61672 * 81.47589 * 25 24 23 44 44 H 1.08992 * 110.61683 * 204.47924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6649 -0.7843 5 7 3.1349 -1.3582 -0.2460 6 6 3.2639 -1.8096 -1.5094 7 8 2.9740 -1.0891 -2.4450 8 7 3.7141 -3.0595 -1.7358 9 6 3.8538 -3.5505 -3.1090 10 6 4.3789 -4.9873 -3.0861 11 6 5.7417 -5.0212 -2.3914 12 6 3.3955 -5.8776 -2.3239 13 6 4.5232 -5.4920 -4.4988 14 1 4.2656 -4.8520 -5.3298 15 6 4.9829 -6.7711 -4.7303 16 7 5.2960 -7.5504 -3.7184 17 14 5.1624 -7.3963 -6.4814 18 1 6.5249 -7.0827 -6.9818 19 1 4.9521 -8.8662 -6.5061 20 1 4.1527 -6.7372 -7.3483 21 6 3.1557 0.4881 1.3577 22 1 4.2410 0.3959 1.4008 23 6 2.7457 1.9576 1.5745 24 6 1.9065 1.9294 2.8751 25 6 2.3729 0.6062 3.5339 26 8 2.5572 -0.2857 2.4110 27 1 -1.0500 -0.0001 0.0009 28 1 3.3659 -1.9332 0.5003 29 1 3.9458 -3.6343 -0.9895 30 1 2.8829 -3.5267 -3.6038 31 1 4.5541 -2.9158 -3.6522 32 1 5.6377 -4.6561 -1.3696 33 1 6.1156 -6.0450 -2.3747 34 1 6.4423 -4.3869 -2.9345 35 1 2.4247 -5.8534 -2.8189 36 1 3.7698 -6.9012 -2.3072 37 1 3.2916 -5.5125 -1.3021 38 1 5.6191 -8.4505 -3.8813 39 1 3.6279 2.5849 1.7032 40 1 2.1445 2.3134 0.7379 41 1 2.1429 2.7840 3.5092 42 1 0.8405 1.8971 2.6496 43 1 3.3140 0.7522 4.0641 44 1 1.6071 0.2222 4.2078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838557575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:22 Heat of formation + Delta-G solvation = -45.471119 kcal Electronic energy + Delta-G solvation = -23866.333379 eV Core-core repulsion = 20398.468254 eV Total energy + Delta-G solvation = -3467.865126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35349 -40.33905 -38.28750 -36.38867 -35.02519 -33.65838 -32.91350 -32.52014 -30.84215 -27.56311 -27.55113 -27.12508 -25.85657 -23.22693 -22.56441 -21.82698 -20.60641 -19.69192 -19.27585 -17.85314 -17.76757 -17.12890 -16.68884 -16.55111 -16.41766 -16.19943 -15.38731 -15.27594 -14.85941 -14.68896 -14.49814 -14.22001 -14.01536 -13.78068 -13.19626 -13.09298 -12.68792 -12.65188 -12.59396 -12.46689 -12.24608 -12.13066 -12.06829 -11.74389 -11.66978 -11.47813 -11.32210 -11.14783 -11.09739 -10.69971 -10.65042 -10.50597 -10.37878 -9.77729 -8.01491 -6.17224 1.37826 1.43413 1.46226 1.54774 1.91796 2.13039 2.24418 2.47683 2.86529 3.22108 3.36014 3.41187 3.65866 3.82338 3.98929 4.15284 4.33342 4.41490 4.47238 4.53565 4.54998 4.71928 4.80362 4.86232 4.97349 4.99679 5.06130 5.06830 5.11285 5.12328 5.20746 5.20880 5.37556 5.40534 5.61717 5.67743 5.68206 5.92174 6.02207 6.15457 6.22569 6.44379 6.70445 6.86970 7.10827 7.50391 7.58763 8.97615 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.002929 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.398108 B = 9555.742829 C = 9811.844086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.215 4.215 3 C 0.272 3.728 4 H 0.106 0.894 5 N -0.725 5.725 6 C 0.699 3.301 7 O -0.636 6.636 8 N -0.724 5.724 9 C 0.168 3.832 10 C 0.053 3.947 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.529 4.529 14 H 0.045 0.955 15 C 0.028 3.972 16 N -0.899 5.899 17 Si 0.946 3.054 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.276 1.276 21 C 0.080 3.920 22 H 0.098 0.902 23 C -0.147 4.147 24 C -0.147 4.147 25 C 0.041 3.959 26 O -0.390 6.390 27 H 0.242 0.758 28 H 0.412 0.588 29 H 0.405 0.595 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 17.072 17.272 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.216 4.216 3 C 0.167 3.833 4 H 0.124 0.876 5 N -0.381 5.381 6 C 0.399 3.601 7 O -0.518 6.518 8 N -0.379 5.379 9 C 0.044 3.956 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.178 4.178 13 C -0.568 4.568 14 H 0.063 0.937 15 C -0.171 4.171 16 N -0.538 5.538 17 Si 0.773 3.227 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.201 1.201 21 C 0.021 3.979 22 H 0.116 0.884 23 C -0.185 4.185 24 C -0.185 4.185 25 C -0.035 4.035 26 O -0.310 6.310 27 H 0.259 0.741 28 H 0.248 0.752 29 H 0.242 0.758 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.848 17.281 16.437 24.337 hybrid contribution 0.056 -0.968 -0.693 1.192 sum -4.792 16.313 15.744 23.172 Atomic orbital electron populations 1.25615 0.96759 0.97905 1.00584 1.23620 0.95289 1.02202 1.00512 1.18052 0.83786 0.83618 0.97838 0.87648 1.44972 1.70829 1.16479 1.05823 1.16184 0.78074 0.82239 0.83593 1.90856 1.59206 1.58108 1.43665 1.45210 1.69621 1.13051 1.10051 1.21143 0.98405 0.95762 0.80326 1.18349 0.92870 0.88620 0.94949 1.21660 0.97679 1.01785 0.96598 1.21666 0.97200 1.02476 0.96435 1.21276 1.44279 0.98937 0.92285 0.93695 1.25454 0.94895 0.96811 0.99989 1.69909 1.44768 1.08298 1.30843 0.85746 0.78274 0.77364 0.81345 1.20380 1.20804 1.20132 1.23045 0.97995 0.91862 0.84984 0.88431 1.22968 1.01894 0.94334 0.99310 1.23093 1.00316 0.98932 0.96137 1.23795 1.01628 0.89059 0.89051 1.88943 1.82713 1.35127 1.24169 0.74129 0.75160 0.75826 0.94902 0.94322 0.94521 0.91868 0.96163 0.96489 0.91784 0.94689 0.93014 0.87841 0.90686 0.87861 0.91284 0.90474 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.62 19.25 74.32 1.43 -3.19 16 2 C -0.21 -5.85 11.41 31.13 0.36 -5.50 16 3 C 0.27 6.85 2.19 43.19 0.09 6.94 16 4 H 0.11 2.87 7.58 -2.39 -0.02 2.85 16 5 N -0.73 -20.37 5.04 -466.57 -2.35 -22.72 16 6 C 0.70 25.88 8.51 179.06 1.52 27.40 16 7 O -0.64 -28.78 16.01 -3.99 -0.06 -28.85 16 8 N -0.72 -26.68 4.96 -478.53 -2.37 -29.05 16 9 C 0.17 7.47 4.50 86.38 0.39 7.86 16 10 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 11 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 12 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 13 C -0.53 -28.51 8.01 25.60 0.21 -28.30 16 14 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 15 C 0.03 1.51 5.15 84.66 0.44 1.94 16 16 N -0.90 -48.48 9.35 21.45 0.20 -48.28 16 17 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 C 0.08 1.41 3.24 30.97 0.10 1.51 16 22 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 23 C -0.15 -1.89 6.28 31.59 0.20 -1.69 16 24 C -0.15 -1.58 7.16 31.90 0.23 -1.35 16 25 C 0.04 0.51 7.72 72.67 0.56 1.07 16 26 O -0.39 -7.65 10.47 -148.98 -1.56 -9.21 16 27 H 0.24 3.93 7.80 -4.42 -0.03 3.89 16 28 H 0.41 9.76 8.47 -92.71 -0.79 8.97 16 29 H 0.41 13.04 6.18 -92.71 -0.57 12.46 16 30 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.38 6.86 -2.38 -0.02 1.37 16 33 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 37 H 0.03 1.36 6.86 -2.38 -0.02 1.34 16 38 H 0.26 13.49 8.31 -92.70 -0.77 12.72 16 39 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.07 1.11 7.25 -2.39 -0.02 1.10 16 41 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.21 357.38 2.18 -65.03 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.36 Total: 28.51 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.66 Total: -0.55 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.52 Total: -100.05 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.62 Total: -38.05 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.21 2.18 -65.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.555 kcal (2) G-P(sol) polarization free energy of solvation -67.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds