Wall clock time and date at job start Tue Mar 31 2020 07:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46931 * 222.56897 * 3 2 1 5 5 N 1.46494 * 109.47054 * 102.56902 * 3 2 1 6 6 C 1.34774 * 120.00201 * 84.99977 * 5 3 2 7 7 O 1.21582 * 120.00356 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00023 * 179.97438 * 6 5 3 9 9 C 1.46497 * 120.00337 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47453 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46970 * 60.00523 * 10 9 8 12 12 C 1.52997 * 109.47016 * 300.00051 * 10 9 8 13 13 C 1.50707 * 109.46963 * 180.02562 * 10 9 8 14 14 H 1.07996 * 120.00092 * 4.92107 * 13 10 9 15 15 C 1.37878 * 119.99631 * 184.92177 * 13 10 9 16 16 N 1.31511 * 119.99880 * 351.63123 * 15 13 10 17 17 Si 1.86797 * 119.99811 * 171.62995 * 15 13 10 18 18 H 1.48499 * 109.47310 * 89.99776 * 17 15 13 19 19 H 1.48501 * 109.46954 * 329.99993 * 17 15 13 20 20 H 1.48494 * 109.47080 * 210.00170 * 17 15 13 21 21 C 1.52996 * 109.47073 * 342.56580 * 3 2 1 22 22 H 1.09006 * 110.33149 * 302.25147 * 21 3 2 23 23 C 1.54474 * 110.37265 * 179.97438 * 21 3 2 24 24 C 1.54512 * 104.06482 * 217.19034 * 23 21 3 25 25 C 1.54475 * 104.06155 * 0.02562 * 24 23 21 26 26 O 1.44426 * 110.37166 * 64.61706 * 21 3 2 27 27 H 4.18744 * 15.03998 * 359.97438 * 4 2 1 28 28 H 0.97007 * 119.99603 * 264.99825 * 5 3 2 29 29 H 0.97006 * 120.00327 * 0.02562 * 8 6 5 30 30 H 1.09006 * 109.46736 * 60.00268 * 9 8 6 31 31 H 1.08996 * 109.47351 * 300.00700 * 9 8 6 32 32 H 1.08997 * 109.46984 * 172.92313 * 11 10 9 33 33 H 1.09006 * 109.46600 * 292.91248 * 11 10 9 34 34 H 1.08999 * 109.47585 * 52.91510 * 11 10 9 35 35 H 1.09006 * 109.47515 * 307.35940 * 12 10 9 36 36 H 1.09004 * 109.47119 * 67.36095 * 12 10 9 37 37 H 1.09000 * 109.47267 * 187.35642 * 12 10 9 38 38 H 0.96993 * 120.00363 * 5.71570 * 16 15 13 39 39 H 1.09000 * 110.51534 * 335.83902 * 23 21 3 40 40 H 1.09005 * 110.51052 * 98.41190 * 23 21 3 41 41 H 1.08997 * 110.50552 * 118.64821 * 24 23 21 42 42 H 1.09001 * 110.51221 * 241.35638 * 24 23 21 43 43 H 1.09003 * 110.37435 * 142.80643 * 25 24 23 44 44 H 1.09000 * 110.37426 * 265.14743 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7577 0.6952 5 7 3.1342 0.3014 -1.3481 6 6 3.2623 1.5820 -1.7483 7 8 2.9724 2.4876 -0.9907 8 7 3.7120 1.8587 -2.9883 9 6 3.8507 3.2506 -3.4236 10 6 4.3752 3.2858 -4.8605 11 6 3.3917 2.5596 -5.7803 12 6 5.7382 2.5936 -4.9230 13 6 4.5186 4.7177 -5.3080 14 1 4.3378 5.5221 -4.6105 15 6 4.8804 5.0008 -6.6080 16 7 5.2598 4.0308 -7.4109 17 14 4.8318 6.7619 -7.2287 18 1 6.1457 7.4094 -6.9844 19 1 3.7698 7.5108 -6.5100 20 1 4.5412 6.7657 -8.6849 21 6 3.1566 -1.3753 0.4322 22 1 2.7687 -1.6306 1.4184 23 6 4.7012 -1.3980 0.4388 24 6 5.0581 -2.8141 -0.0660 25 6 3.6869 -3.4791 -0.3186 26 8 2.7775 -2.3788 -0.5349 27 1 -1.0500 -0.0002 -0.0008 28 1 3.3652 -0.4212 -1.9526 29 1 3.9430 1.1362 -3.5930 30 1 4.5511 3.7681 -2.7680 31 1 2.8797 3.7436 -3.3795 32 1 3.6990 2.6919 -6.8177 33 1 3.3832 1.4971 -5.5367 34 1 2.3923 2.9721 -5.6419 35 1 6.4006 3.0270 -4.1735 36 1 5.6143 1.5287 -4.7262 37 1 6.1709 2.7319 -5.9138 38 1 5.2064 3.1083 -7.1162 39 1 5.0973 -0.6404 -0.2373 40 1 5.0811 -1.2434 1.4488 41 1 5.6306 -2.7564 -0.9917 42 1 5.6144 -3.3618 0.6947 43 1 3.7307 -4.1150 -1.2028 44 1 3.3802 -4.0589 0.5520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838557577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:26 Heat of formation + Delta-G solvation = -18.792661 kcal Electronic energy + Delta-G solvation = -24152.457363 eV Core-core repulsion = 20685.749102 eV Total energy + Delta-G solvation = -3466.708261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35802 -39.24863 -36.96727 -35.33222 -33.54190 -32.52064 -32.21782 -30.65520 -29.78584 -26.40936 -26.03003 -25.64898 -24.14041 -22.47848 -21.31363 -20.82437 -18.90753 -18.52475 -18.41007 -16.87515 -16.64963 -16.26743 -15.80326 -15.26542 -15.07446 -14.33070 -14.10581 -13.99422 -13.82149 -13.72645 -12.93160 -12.87908 -12.64706 -12.51527 -12.08930 -11.83980 -11.63128 -11.52405 -11.25954 -11.00543 -10.91346 -10.62994 -10.59500 -10.57123 -10.28140 -10.09856 -10.05496 -9.86881 -9.81743 -9.49231 -9.20102 -8.54475 -8.33029 -8.18006 -6.25153 -4.08949 2.48321 2.84875 3.36113 3.44260 3.47726 3.48390 3.59399 3.63675 4.12928 4.28023 4.50683 4.56311 4.57447 4.67268 4.85094 4.91417 5.07086 5.25329 5.33387 5.33658 5.48164 5.50289 5.65991 5.76364 5.93145 6.00734 6.21883 6.27852 6.40121 6.58205 6.58904 6.63738 6.71399 6.82892 6.95556 7.09062 7.12424 7.30623 7.52185 7.64829 7.68322 8.21057 8.39341 8.42665 8.85508 8.96983 9.61352 11.01036 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.003356 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.957558 B = 8341.087678 C = 8885.688413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.285 3.715 4 H 0.120 0.880 5 N -0.739 5.739 6 C 0.699 3.301 7 O -0.595 6.595 8 N -0.733 5.733 9 C 0.159 3.841 10 C 0.041 3.959 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.586 4.586 14 H 0.052 0.948 15 C 0.026 3.974 16 N -0.918 5.918 17 Si 1.067 2.933 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.285 1.285 21 C 0.074 3.926 22 H 0.086 0.914 23 C -0.154 4.154 24 C -0.155 4.155 25 C 0.043 3.957 26 O -0.364 6.364 27 H 0.216 0.784 28 H 0.401 0.599 29 H 0.393 0.607 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.016 0.984 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.014 0.986 37 H 0.070 0.930 38 H 0.281 0.719 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -15.887 14.475 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.179 3.821 4 H 0.137 0.863 5 N -0.395 5.395 6 C 0.399 3.601 7 O -0.474 6.474 8 N -0.387 5.387 9 C 0.036 3.964 10 C 0.040 3.960 11 C -0.203 4.203 12 C -0.200 4.200 13 C -0.624 4.624 14 H 0.071 0.929 15 C -0.178 4.178 16 N -0.558 5.558 17 Si 0.896 3.104 18 H -0.216 1.216 19 H -0.214 1.214 20 H -0.211 1.211 21 C 0.016 3.984 22 H 0.104 0.896 23 C -0.191 4.191 24 C -0.193 4.193 25 C -0.034 4.034 26 O -0.283 6.283 27 H 0.233 0.767 28 H 0.236 0.764 29 H 0.227 0.773 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.222 -14.044 13.673 19.726 hybrid contribution -0.265 -1.703 0.929 1.958 sum -2.487 -15.747 14.603 21.619 Atomic orbital electron populations 1.24861 0.95843 1.00976 0.98929 1.23311 0.94592 1.00039 1.01308 1.17552 0.83640 0.95221 0.85707 0.86254 1.45039 1.71885 1.06801 1.15792 1.16065 0.78494 0.82609 0.82904 1.90893 1.57399 1.44780 1.54306 1.45483 1.69639 1.10719 1.12892 1.21471 1.00195 0.78182 0.96576 1.18537 0.91409 0.96788 0.89251 1.22026 0.99223 0.95955 1.03047 1.22068 0.99571 0.95850 1.02545 1.21769 1.51868 0.90346 0.98428 0.92919 1.25661 0.92907 1.05834 0.93371 1.70840 1.42499 1.01763 1.40700 0.83577 0.76500 0.74345 0.76009 1.21550 1.21433 1.21078 1.23298 0.94183 0.87636 0.93310 0.89608 1.23019 0.94769 0.98180 1.03168 1.22942 0.98141 0.95763 1.02420 1.23432 0.88069 0.90089 1.01779 1.89194 1.55567 1.27142 1.56353 0.76732 0.76396 0.77299 0.92758 0.92735 0.90951 0.96529 0.94435 0.94518 0.96690 0.91150 0.90301 0.89539 0.89990 0.90342 0.90431 0.88879 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 19.25 29.55 0.57 -1.86 16 2 C -0.19 -2.71 12.62 -37.12 -0.47 -3.18 16 3 C 0.28 3.62 2.27 -70.72 -0.16 3.46 16 4 H 0.12 1.57 7.58 -51.93 -0.39 1.18 16 5 N -0.74 -10.33 4.12 -61.45 -0.25 -10.59 16 6 C 0.70 12.71 8.51 -86.92 -0.74 11.97 16 7 O -0.60 -13.07 16.01 5.29 0.08 -12.99 16 8 N -0.73 -13.37 5.04 -65.23 -0.33 -13.70 16 9 C 0.16 3.46 4.50 -4.04 -0.02 3.44 16 10 C 0.04 0.96 0.50 -155.66 -0.08 0.88 16 11 C -0.14 -3.26 7.85 37.15 0.29 -2.97 16 12 C -0.14 -3.16 7.91 37.16 0.29 -2.86 16 13 C -0.59 -15.75 8.00 -34.44 -0.28 -16.03 16 14 H 0.05 1.44 7.76 -52.49 -0.41 1.04 16 15 C 0.03 0.71 5.07 -17.82 -0.09 0.62 16 16 N -0.92 -25.94 12.17 55.43 0.67 -25.26 16 17 Si 1.07 24.67 29.91 -169.99 -5.08 19.59 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 C 0.07 0.71 2.99 -25.96 -0.08 0.63 16 22 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 23 C -0.15 -1.22 6.53 -25.16 -0.16 -1.38 16 24 C -0.15 -1.02 7.09 -25.16 -0.18 -1.20 16 25 C 0.04 0.32 7.63 37.93 0.29 0.60 16 26 O -0.36 -3.84 10.45 -35.23 -0.37 -4.21 16 27 H 0.22 1.98 7.80 -54.09 -0.42 1.55 16 28 H 0.40 4.94 8.08 -40.82 -0.33 4.61 16 29 H 0.39 6.40 6.30 -40.82 -0.26 6.15 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.79 5.16 -51.93 -0.27 1.52 16 33 H 0.02 0.31 7.04 -51.93 -0.37 -0.05 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.01 0.27 7.05 -51.93 -0.37 -0.09 16 37 H 0.07 1.73 5.30 -51.93 -0.28 1.45 16 38 H 0.28 7.67 3.59 -40.82 -0.15 7.52 16 39 H 0.09 0.81 7.20 -51.93 -0.37 0.44 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -32.27 354.04 -7.38 -39.65 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.63 Total: 10.04 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.81 Total: -7.87 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.09 Total: -49.55 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.28 Total: -17.20 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.27 -7.38 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.853 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds