Wall clock time and date at job start Tue Mar 31 2020 07:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46931 * 222.56897 * 3 2 1 5 5 N 1.46494 * 109.47054 * 102.56902 * 3 2 1 6 6 C 1.34774 * 120.00201 * 84.99977 * 5 3 2 7 7 O 1.21582 * 120.00356 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00023 * 179.97438 * 6 5 3 9 9 C 1.46497 * 120.00337 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47453 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46970 * 60.00523 * 10 9 8 12 12 C 1.52997 * 109.47016 * 300.00051 * 10 9 8 13 13 C 1.50707 * 109.46963 * 180.02562 * 10 9 8 14 14 H 1.07996 * 120.00092 * 4.92107 * 13 10 9 15 15 C 1.37878 * 119.99631 * 184.92177 * 13 10 9 16 16 N 1.31511 * 119.99880 * 351.63123 * 15 13 10 17 17 Si 1.86797 * 119.99811 * 171.62995 * 15 13 10 18 18 H 1.48499 * 109.47310 * 89.99776 * 17 15 13 19 19 H 1.48501 * 109.46954 * 329.99993 * 17 15 13 20 20 H 1.48494 * 109.47080 * 210.00170 * 17 15 13 21 21 C 1.52996 * 109.47073 * 342.56580 * 3 2 1 22 22 H 1.09006 * 110.33149 * 302.25147 * 21 3 2 23 23 C 1.54474 * 110.37265 * 179.97438 * 21 3 2 24 24 C 1.54512 * 104.06482 * 217.19034 * 23 21 3 25 25 C 1.54475 * 104.06155 * 0.02562 * 24 23 21 26 26 O 1.44426 * 110.37166 * 64.61706 * 21 3 2 27 27 H 4.18744 * 15.03998 * 359.97438 * 4 2 1 28 28 H 0.97007 * 119.99603 * 264.99825 * 5 3 2 29 29 H 0.97006 * 120.00327 * 0.02562 * 8 6 5 30 30 H 1.09006 * 109.46736 * 60.00268 * 9 8 6 31 31 H 1.08996 * 109.47351 * 300.00700 * 9 8 6 32 32 H 1.08997 * 109.46984 * 172.92313 * 11 10 9 33 33 H 1.09006 * 109.46600 * 292.91248 * 11 10 9 34 34 H 1.08999 * 109.47585 * 52.91510 * 11 10 9 35 35 H 1.09006 * 109.47515 * 307.35940 * 12 10 9 36 36 H 1.09004 * 109.47119 * 67.36095 * 12 10 9 37 37 H 1.09000 * 109.47267 * 187.35642 * 12 10 9 38 38 H 0.96993 * 120.00363 * 5.71570 * 16 15 13 39 39 H 1.09000 * 110.51534 * 335.83902 * 23 21 3 40 40 H 1.09005 * 110.51052 * 98.41190 * 23 21 3 41 41 H 1.08997 * 110.50552 * 118.64821 * 24 23 21 42 42 H 1.09001 * 110.51221 * 241.35638 * 24 23 21 43 43 H 1.09003 * 110.37435 * 142.80643 * 25 24 23 44 44 H 1.09000 * 110.37426 * 265.14743 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7577 0.6952 5 7 3.1342 0.3014 -1.3481 6 6 3.2623 1.5820 -1.7483 7 8 2.9724 2.4876 -0.9907 8 7 3.7120 1.8587 -2.9883 9 6 3.8507 3.2506 -3.4236 10 6 4.3752 3.2858 -4.8605 11 6 3.3917 2.5596 -5.7803 12 6 5.7382 2.5936 -4.9230 13 6 4.5186 4.7177 -5.3080 14 1 4.3378 5.5221 -4.6105 15 6 4.8804 5.0008 -6.6080 16 7 5.2598 4.0308 -7.4109 17 14 4.8318 6.7619 -7.2287 18 1 6.1457 7.4094 -6.9844 19 1 3.7698 7.5108 -6.5100 20 1 4.5412 6.7657 -8.6849 21 6 3.1566 -1.3753 0.4322 22 1 2.7687 -1.6306 1.4184 23 6 4.7012 -1.3980 0.4388 24 6 5.0581 -2.8141 -0.0660 25 6 3.6869 -3.4791 -0.3186 26 8 2.7775 -2.3788 -0.5349 27 1 -1.0500 -0.0002 -0.0008 28 1 3.3652 -0.4212 -1.9526 29 1 3.9430 1.1362 -3.5930 30 1 4.5511 3.7681 -2.7680 31 1 2.8797 3.7436 -3.3795 32 1 3.6990 2.6919 -6.8177 33 1 3.3832 1.4971 -5.5367 34 1 2.3923 2.9721 -5.6419 35 1 6.4006 3.0270 -4.1735 36 1 5.6143 1.5287 -4.7262 37 1 6.1709 2.7319 -5.9138 38 1 5.2064 3.1083 -7.1162 39 1 5.0973 -0.6404 -0.2373 40 1 5.0811 -1.2434 1.4488 41 1 5.6306 -2.7564 -0.9917 42 1 5.6144 -3.3618 0.6947 43 1 3.7307 -4.1150 -1.2028 44 1 3.3802 -4.0589 0.5520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838557577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:26 Heat of formation + Delta-G solvation = -39.697930 kcal Electronic energy + Delta-G solvation = -24153.363883 eV Core-core repulsion = 20685.749102 eV Total energy + Delta-G solvation = -3467.614782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47727 -40.34096 -38.71030 -36.51022 -35.26863 -33.59969 -33.02264 -32.28030 -30.80828 -27.86701 -27.86400 -27.04641 -25.86678 -23.17448 -22.28462 -21.98185 -20.75747 -19.99896 -19.43405 -18.50099 -17.79444 -17.10908 -16.65942 -16.55684 -16.30085 -15.69663 -15.58463 -15.51683 -15.02533 -14.69575 -14.48700 -14.45911 -14.36944 -13.66576 -13.35657 -13.21004 -12.77238 -12.66987 -12.54254 -12.52792 -12.41449 -12.19525 -11.91909 -11.72914 -11.71112 -11.56647 -11.40789 -11.28401 -11.16507 -10.79036 -10.55364 -10.53017 -10.22627 -9.86490 -8.37810 -6.23048 1.31572 1.57063 1.64030 1.81920 1.83972 2.07045 2.17480 2.61076 2.83626 3.25451 3.25904 3.35080 3.64747 3.86042 3.99586 4.15113 4.19327 4.28299 4.35357 4.41094 4.44164 4.48228 4.73149 4.82433 4.83102 4.87323 4.88938 4.98897 4.99816 5.01836 5.12227 5.16864 5.18096 5.21035 5.34479 5.45849 5.64645 5.83485 5.83854 5.94798 6.18256 6.33391 6.63689 6.75672 7.04738 7.50884 7.54067 8.90116 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.003356 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.957558 B = 8341.087678 C = 8885.688413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.231 4.231 3 C 0.279 3.721 4 H 0.110 0.890 5 N -0.719 5.719 6 C 0.700 3.300 7 O -0.635 6.635 8 N -0.725 5.725 9 C 0.177 3.823 10 C 0.035 3.965 11 C -0.135 4.135 12 C -0.131 4.131 13 C -0.605 4.605 14 H 0.037 0.963 15 C -0.014 4.014 16 N -0.937 5.937 17 Si 1.105 2.895 18 H -0.278 1.278 19 H -0.280 1.280 20 H -0.284 1.284 21 C 0.082 3.918 22 H 0.102 0.898 23 C -0.152 4.152 24 C -0.149 4.149 25 C 0.038 3.962 26 O -0.388 6.388 27 H 0.246 0.754 28 H 0.412 0.588 29 H 0.405 0.595 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.279 0.721 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -17.655 15.213 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.233 4.233 3 C 0.174 3.826 4 H 0.128 0.872 5 N -0.375 5.375 6 C 0.400 3.600 7 O -0.516 6.516 8 N -0.380 5.380 9 C 0.053 3.947 10 C 0.035 3.965 11 C -0.193 4.193 12 C -0.189 4.189 13 C -0.643 4.643 14 H 0.056 0.944 15 C -0.214 4.214 16 N -0.578 5.578 17 Si 0.929 3.071 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.209 1.209 21 C 0.023 3.977 22 H 0.119 0.881 23 C -0.190 4.190 24 C -0.187 4.187 25 C -0.038 4.038 26 O -0.308 6.308 27 H 0.262 0.738 28 H 0.248 0.752 29 H 0.241 0.759 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.246 -15.885 14.421 21.572 hybrid contribution -0.314 -1.219 0.761 1.471 sum -2.560 -17.104 15.182 23.013 Atomic orbital electron populations 1.25734 0.96874 0.99916 0.97434 1.23828 0.95587 1.01176 1.02698 1.17764 0.83400 0.97038 0.84412 0.87224 1.44858 1.70650 1.05382 1.16598 1.16154 0.78067 0.83461 0.82314 1.90867 1.59039 1.46405 1.55323 1.45162 1.69919 1.09578 1.13369 1.20989 0.98424 0.79867 0.95441 1.18539 0.92477 0.95446 0.90074 1.21881 0.98213 0.97818 1.01343 1.21899 0.98287 0.97835 1.00928 1.22086 1.51790 0.91958 0.98467 0.94432 1.26737 0.92438 1.08441 0.93772 1.70897 1.43647 1.02138 1.41159 0.83061 0.77177 0.71201 0.75614 1.20419 1.20550 1.20937 1.23270 0.95088 0.85735 0.93560 0.88072 1.23021 0.93498 0.98649 1.03856 1.22930 0.97934 0.94853 1.02941 1.23626 0.87828 0.89463 1.02857 1.89164 1.56683 1.28106 1.56798 0.73792 0.75167 0.75898 0.94328 0.94821 0.93135 0.93291 0.95288 0.95039 0.93275 0.93444 0.90474 0.91207 0.88364 0.90466 0.88505 0.88071 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.44 19.25 74.32 1.43 -3.00 16 2 C -0.23 -6.38 12.62 31.13 0.39 -5.99 16 3 C 0.28 6.91 2.27 43.19 0.10 7.01 16 4 H 0.11 2.90 7.58 -2.39 -0.02 2.89 16 5 N -0.72 -19.46 4.12 -466.59 -1.92 -21.38 16 6 C 0.70 25.16 8.51 179.06 1.52 26.68 16 7 O -0.63 -28.17 16.01 -3.97 -0.06 -28.24 16 8 N -0.73 -25.82 5.04 -478.54 -2.41 -28.23 16 9 C 0.18 7.78 4.50 86.38 0.39 8.17 16 10 C 0.04 1.66 0.50 -52.93 -0.03 1.63 16 11 C -0.13 -5.98 7.85 71.98 0.57 -5.41 16 12 C -0.13 -5.73 7.91 71.98 0.57 -5.16 16 13 C -0.60 -32.92 8.00 25.60 0.20 -32.72 16 14 H 0.04 2.10 7.76 -2.91 -0.02 2.08 16 15 C -0.01 -0.76 5.07 84.66 0.43 -0.34 16 16 N -0.94 -53.15 12.17 21.45 0.26 -52.88 16 17 Si 1.11 49.78 29.91 68.60 2.05 51.84 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 C 0.08 1.42 2.99 31.09 0.09 1.52 16 22 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 23 C -0.15 -2.12 6.53 31.61 0.21 -1.91 16 24 C -0.15 -1.57 7.09 31.61 0.22 -1.34 16 25 C 0.04 0.46 7.63 72.48 0.55 1.02 16 26 O -0.39 -7.45 10.45 -148.98 -1.56 -9.01 16 27 H 0.25 3.93 7.80 -4.42 -0.03 3.90 16 28 H 0.41 9.49 8.08 -92.70 -0.75 8.74 16 29 H 0.40 12.37 6.30 -92.70 -0.58 11.79 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 2.48 5.16 -2.39 -0.01 2.47 16 33 H 0.05 1.80 7.04 -2.38 -0.02 1.79 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.05 1.76 7.05 -2.38 -0.02 1.74 16 37 H 0.05 2.30 5.30 -2.39 -0.01 2.29 16 38 H 0.28 15.34 3.59 -92.71 -0.33 15.01 16 39 H 0.07 1.21 7.20 -2.39 -0.02 1.20 16 40 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.01 354.04 3.12 -66.89 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.11 Total: 30.87 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 6.65 Total: -9.85 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -4.07 Total: -102.49 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.62 Total: -37.25 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.84 kcal Total: -70.01 3.12 -66.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.191 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds