Wall clock time and date at job start Tue Mar 31 2020 07:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47402 * 305.98620 * 3 2 1 5 5 N 1.46499 * 109.47352 * 65.99242 * 3 2 1 6 6 C 1.34777 * 120.00065 * 274.99642 * 5 3 2 7 7 O 1.21593 * 119.99923 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00128 * 180.02562 * 6 5 3 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53010 * 109.47146 * 299.99645 * 10 9 8 12 12 C 1.53000 * 109.47166 * 59.99736 * 10 9 8 13 13 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99965 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00490 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99545 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00173 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47199 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47080 * 119.99932 * 17 15 13 20 20 H 1.48498 * 109.47127 * 239.99826 * 17 15 13 21 21 C 1.53002 * 109.46949 * 185.99025 * 3 2 1 22 22 H 1.08998 * 110.27281 * 65.63622 * 21 3 2 23 23 C 1.54943 * 110.31059 * 187.83125 * 21 3 2 24 24 C 1.55305 * 100.94146 * 155.36279 * 23 21 3 25 25 C 1.54385 * 102.25234 * 325.86773 * 24 23 21 26 26 O 1.43233 * 107.58515 * 21.35418 * 25 24 23 27 27 H 4.18737 * 15.04006 * 0.02562 * 4 2 1 28 28 H 0.97000 * 120.00386 * 95.00010 * 5 3 2 29 29 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 30 30 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 31 31 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 32 32 H 1.09003 * 109.46863 * 59.99870 * 11 10 9 33 33 H 1.09001 * 109.47172 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.46753 * 300.00454 * 11 10 9 35 35 H 1.08990 * 109.47258 * 60.00092 * 12 10 9 36 36 H 1.09001 * 109.46739 * 180.02562 * 12 10 9 37 37 H 1.08999 * 109.47407 * 299.99599 * 12 10 9 38 38 H 0.97004 * 119.99855 * 180.02562 * 16 15 13 39 39 H 1.08999 * 111.12881 * 273.28047 * 23 21 3 40 40 H 1.09001 * 111.12575 * 37.44219 * 23 21 3 41 41 H 1.09004 * 110.84516 * 207.67787 * 24 23 21 42 42 H 1.09000 * 111.02341 * 84.13593 * 24 23 21 43 43 H 1.09006 * 109.82687 * 261.84505 * 25 24 23 44 44 H 1.08996 * 109.82810 * 140.87358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0096 -0.6030 0.8316 5 7 3.1346 -0.5611 -1.2617 6 6 3.2640 -1.8955 -1.4000 7 8 2.9747 -2.6331 -0.4776 8 7 3.7140 -2.4122 -2.5605 9 6 3.8489 -3.8630 -2.7128 10 6 4.3687 -4.1824 -4.1159 11 6 3.3836 -3.6495 -5.1584 12 6 5.7328 -3.5194 -4.3175 13 6 4.5081 -5.6747 -4.2725 14 1 4.2519 -6.3299 -3.4530 15 6 4.9626 -6.2037 -5.4618 16 7 5.2742 -5.4059 -6.4598 17 14 5.1360 -8.0535 -5.6556 18 1 4.7234 -8.7239 -4.3964 19 1 4.2707 -8.5178 -6.7695 20 1 6.5512 -8.3893 -5.9550 21 6 3.1553 1.4355 0.1505 22 1 2.8833 1.8322 1.1287 23 6 4.6917 1.4840 -0.0435 24 6 4.8856 2.9576 -0.4941 25 6 3.6007 3.2232 -1.3077 26 8 2.6193 2.2667 -0.8911 27 1 -1.0500 -0.0008 0.0002 28 1 3.3650 0.0273 -1.9976 29 1 3.9444 -1.8238 -3.2964 30 1 4.5507 -4.2426 -1.9702 31 1 2.8771 -4.3354 -2.5693 32 1 3.2832 -2.5700 -5.0450 33 1 3.7542 -3.8766 -6.1580 34 1 2.4118 -4.1218 -5.0147 35 1 6.4346 -3.8989 -3.5749 36 1 6.1030 -3.7465 -5.3172 37 1 5.6325 -2.4399 -4.2042 38 1 5.5936 -5.7781 -7.2967 39 1 5.2125 1.2881 0.8937 40 1 5.0116 0.7902 -0.8210 41 1 5.7705 3.0578 -1.1226 42 1 4.9451 3.6248 0.3658 43 1 3.8055 3.1034 -2.3716 44 1 3.2404 4.2328 -1.1106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838557581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:30 Heat of formation + Delta-G solvation = -24.183252 kcal Electronic energy + Delta-G solvation = -24106.056627 eV Core-core repulsion = 20639.114612 eV Total energy + Delta-G solvation = -3466.942015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33317 -39.17467 -36.58744 -35.19864 -33.29760 -32.53234 -32.13385 -30.84146 -29.88879 -26.33704 -25.70053 -25.43111 -24.49900 -22.16262 -21.56606 -20.76078 -18.79936 -18.46140 -18.16017 -16.94571 -16.46365 -15.81218 -15.63731 -15.25259 -14.76129 -14.71680 -14.21636 -13.86890 -13.82337 -13.46176 -12.97356 -12.84285 -12.72308 -12.15497 -12.09452 -11.80940 -11.62920 -11.36739 -11.18561 -11.16380 -10.86337 -10.64192 -10.51771 -10.36719 -10.19627 -10.17985 -9.80502 -9.71533 -9.60857 -9.28433 -9.13898 -8.75994 -8.40514 -8.19888 -6.00428 -4.10093 2.55630 2.93464 3.28559 3.36875 3.38547 3.42642 3.50063 3.65083 4.15477 4.23465 4.40672 4.56156 4.65656 4.74650 4.89767 4.91727 5.07913 5.26517 5.35516 5.40736 5.48367 5.54664 5.61669 5.83870 5.99312 6.23123 6.39178 6.52415 6.57354 6.71960 6.82211 6.85373 6.93138 7.05676 7.11650 7.31593 7.43229 7.58278 7.71955 7.73013 8.03354 8.14727 8.40156 8.48947 8.89981 9.04623 9.55624 11.01027 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.003336 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.835975 B = 8390.457065 C = 8913.093846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C 0.280 3.720 4 H 0.119 0.881 5 N -0.740 5.740 6 C 0.699 3.301 7 O -0.596 6.596 8 N -0.731 5.731 9 C 0.151 3.849 10 C 0.055 3.945 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.504 4.504 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.080 3.920 22 H 0.088 0.912 23 C -0.153 4.153 24 C -0.156 4.156 25 C 0.048 3.952 26 O -0.371 6.371 27 H 0.215 0.785 28 H 0.398 0.602 29 H 0.394 0.606 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.005 0.995 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.005 0.995 38 H 0.259 0.741 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 18.086 9.896 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.174 3.826 4 H 0.137 0.863 5 N -0.397 5.397 6 C 0.399 3.601 7 O -0.475 6.475 8 N -0.385 5.385 9 C 0.028 3.972 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.022 3.978 22 H 0.106 0.894 23 C -0.191 4.191 24 C -0.193 4.193 25 C -0.029 4.029 26 O -0.290 6.290 27 H 0.232 0.768 28 H 0.233 0.767 29 H 0.228 0.772 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.771 17.319 10.452 20.306 hybrid contribution 0.235 -0.372 -0.826 0.936 sum -1.537 16.947 9.626 19.551 Atomic orbital electron populations 1.24827 0.95825 1.00856 0.99373 1.23243 0.94528 1.00014 1.01016 1.17656 0.83811 0.92620 0.88560 0.86313 1.45092 1.72009 1.05989 1.16602 1.16080 0.78510 0.81600 0.83929 1.90891 1.57479 1.58606 1.40478 1.45497 1.69436 1.10009 1.13575 1.21589 1.00069 0.75768 0.99798 1.18374 0.92168 0.95883 0.88122 1.21817 0.98172 0.94911 1.03825 1.21808 0.98605 0.94683 1.03555 1.21029 1.43773 0.90453 0.98996 0.92356 1.24879 0.95043 0.97850 0.95778 1.69819 1.44974 1.33918 1.03776 0.86517 0.77607 0.85654 0.78124 1.19742 1.21097 1.21088 1.23275 0.92789 0.89193 0.92572 0.89397 1.23347 0.94932 0.97066 1.03728 1.23126 0.98794 0.96642 1.00761 1.23166 0.87904 0.92882 0.98950 1.88517 1.38088 1.47582 1.54857 0.76833 0.76703 0.77183 0.92901 0.92981 0.97563 0.89665 0.95474 0.95459 0.89691 0.97580 0.93114 0.89323 0.89227 0.89732 0.90488 0.91062 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 19.25 29.55 0.57 -1.96 16 2 C -0.19 -2.70 12.42 -37.13 -0.46 -3.16 16 3 C 0.28 3.58 2.41 -70.72 -0.17 3.41 16 4 H 0.12 1.57 7.58 -51.93 -0.39 1.18 16 5 N -0.74 -10.31 4.01 -61.44 -0.25 -10.56 16 6 C 0.70 12.71 8.51 -86.92 -0.74 11.97 16 7 O -0.60 -13.11 16.01 5.28 0.08 -13.03 16 8 N -0.73 -13.38 4.96 -65.23 -0.32 -13.70 16 9 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 11 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 12 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 13 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 C 0.08 0.77 3.22 -25.70 -0.08 0.69 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 C -0.15 -1.20 6.45 -24.48 -0.16 -1.35 16 24 C -0.16 -0.98 7.02 -24.78 -0.17 -1.16 16 25 C 0.05 0.37 7.79 37.88 0.30 0.66 16 26 O -0.37 -4.03 10.29 -35.23 -0.36 -4.39 16 27 H 0.21 2.05 7.80 -54.09 -0.42 1.63 16 28 H 0.40 4.80 7.93 -40.82 -0.32 4.47 16 29 H 0.39 6.48 6.18 -40.82 -0.25 6.23 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.79 6.77 -51.93 -0.35 0.44 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -30.91 356.48 -7.62 -38.53 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.85 Total: 8.71 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.79 Total: -3.61 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.05 Total: -47.39 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.28 Total: -17.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.91 -7.62 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.345 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds