Wall clock time and date at job start Tue Mar 31 2020 07:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47402 * 305.98620 * 3 2 1 5 5 N 1.46499 * 109.47352 * 65.99242 * 3 2 1 6 6 C 1.34777 * 120.00065 * 274.99642 * 5 3 2 7 7 O 1.21593 * 119.99923 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00128 * 180.02562 * 6 5 3 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53010 * 109.47146 * 299.99645 * 10 9 8 12 12 C 1.53000 * 109.47166 * 59.99736 * 10 9 8 13 13 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99965 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00490 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99545 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00173 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47199 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47080 * 119.99932 * 17 15 13 20 20 H 1.48498 * 109.47127 * 239.99826 * 17 15 13 21 21 C 1.53002 * 109.46949 * 185.99025 * 3 2 1 22 22 H 1.08998 * 110.27281 * 65.63622 * 21 3 2 23 23 C 1.54943 * 110.31059 * 187.83125 * 21 3 2 24 24 C 1.55305 * 100.94146 * 155.36279 * 23 21 3 25 25 C 1.54385 * 102.25234 * 325.86773 * 24 23 21 26 26 O 1.43233 * 107.58515 * 21.35418 * 25 24 23 27 27 H 4.18737 * 15.04006 * 0.02562 * 4 2 1 28 28 H 0.97000 * 120.00386 * 95.00010 * 5 3 2 29 29 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 30 30 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 31 31 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 32 32 H 1.09003 * 109.46863 * 59.99870 * 11 10 9 33 33 H 1.09001 * 109.47172 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.46753 * 300.00454 * 11 10 9 35 35 H 1.08990 * 109.47258 * 60.00092 * 12 10 9 36 36 H 1.09001 * 109.46739 * 180.02562 * 12 10 9 37 37 H 1.08999 * 109.47407 * 299.99599 * 12 10 9 38 38 H 0.97004 * 119.99855 * 180.02562 * 16 15 13 39 39 H 1.08999 * 111.12881 * 273.28047 * 23 21 3 40 40 H 1.09001 * 111.12575 * 37.44219 * 23 21 3 41 41 H 1.09004 * 110.84516 * 207.67787 * 24 23 21 42 42 H 1.09000 * 111.02341 * 84.13593 * 24 23 21 43 43 H 1.09006 * 109.82687 * 261.84505 * 25 24 23 44 44 H 1.08996 * 109.82810 * 140.87358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0096 -0.6030 0.8316 5 7 3.1346 -0.5611 -1.2617 6 6 3.2640 -1.8955 -1.4000 7 8 2.9747 -2.6331 -0.4776 8 7 3.7140 -2.4122 -2.5605 9 6 3.8489 -3.8630 -2.7128 10 6 4.3687 -4.1824 -4.1159 11 6 3.3836 -3.6495 -5.1584 12 6 5.7328 -3.5194 -4.3175 13 6 4.5081 -5.6747 -4.2725 14 1 4.2519 -6.3299 -3.4530 15 6 4.9626 -6.2037 -5.4618 16 7 5.2742 -5.4059 -6.4598 17 14 5.1360 -8.0535 -5.6556 18 1 4.7234 -8.7239 -4.3964 19 1 4.2707 -8.5178 -6.7695 20 1 6.5512 -8.3893 -5.9550 21 6 3.1553 1.4355 0.1505 22 1 2.8833 1.8322 1.1287 23 6 4.6917 1.4840 -0.0435 24 6 4.8856 2.9576 -0.4941 25 6 3.6007 3.2232 -1.3077 26 8 2.6193 2.2667 -0.8911 27 1 -1.0500 -0.0008 0.0002 28 1 3.3650 0.0273 -1.9976 29 1 3.9444 -1.8238 -3.2964 30 1 4.5507 -4.2426 -1.9702 31 1 2.8771 -4.3354 -2.5693 32 1 3.2832 -2.5700 -5.0450 33 1 3.7542 -3.8766 -6.1580 34 1 2.4118 -4.1218 -5.0147 35 1 6.4346 -3.8989 -3.5749 36 1 6.1030 -3.7465 -5.3172 37 1 5.6325 -2.4399 -4.2042 38 1 5.5936 -5.7781 -7.2967 39 1 5.2125 1.2881 0.8937 40 1 5.0116 0.7902 -0.8210 41 1 5.7705 3.0578 -1.1226 42 1 4.9451 3.6248 0.3658 43 1 3.8055 3.1034 -2.3716 44 1 3.2404 4.2328 -1.1106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838557581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:29 Heat of formation + Delta-G solvation = -43.731346 kcal Electronic energy + Delta-G solvation = -24106.904295 eV Core-core repulsion = 20639.114612 eV Total energy + Delta-G solvation = -3467.789684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42787 -40.28748 -38.27669 -36.41262 -35.01881 -33.59232 -33.03546 -32.46993 -30.84967 -27.56778 -27.54898 -27.18236 -26.08396 -22.76366 -22.48161 -22.03271 -20.59820 -19.80794 -19.26251 -17.85992 -17.72775 -17.33535 -16.61438 -16.56818 -16.52156 -15.82507 -15.49190 -15.31768 -14.91008 -14.68368 -14.35951 -14.28550 -13.99698 -13.80852 -13.19980 -13.09575 -12.70730 -12.68095 -12.55959 -12.54999 -12.24477 -12.19031 -12.13014 -11.73017 -11.64755 -11.47486 -11.32170 -11.12974 -11.11569 -10.68817 -10.54864 -10.43250 -10.37103 -9.76625 -8.01298 -6.16697 1.37428 1.42258 1.46718 1.56262 1.90131 2.14151 2.23395 2.47954 2.78957 3.22440 3.31999 3.42448 3.58635 3.90029 4.01904 4.20920 4.25881 4.40207 4.42876 4.50142 4.54662 4.72410 4.84247 4.91616 4.98491 5.00677 5.04921 5.07191 5.08093 5.11688 5.21396 5.27927 5.38535 5.42076 5.62306 5.68260 5.68836 5.99372 6.06820 6.16054 6.23089 6.44917 6.69269 6.87551 7.10960 7.50954 7.59701 8.97848 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.003336 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.835975 B = 8390.457065 C = 8913.093846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.226 4.226 3 C 0.274 3.726 4 H 0.110 0.890 5 N -0.720 5.720 6 C 0.700 3.300 7 O -0.635 6.635 8 N -0.724 5.724 9 C 0.168 3.832 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.527 4.527 14 H 0.044 0.956 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.945 3.055 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.280 1.280 21 C 0.086 3.914 22 H 0.102 0.898 23 C -0.152 4.152 24 C -0.146 4.146 25 C 0.040 3.960 26 O -0.395 6.395 27 H 0.244 0.756 28 H 0.410 0.590 29 H 0.405 0.595 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.260 0.740 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 19.806 10.111 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.227 4.227 3 C 0.169 3.831 4 H 0.128 0.872 5 N -0.376 5.376 6 C 0.400 3.600 7 O -0.517 6.517 8 N -0.379 5.379 9 C 0.044 3.956 10 C 0.051 3.949 11 C -0.177 4.177 12 C -0.176 4.176 13 C -0.566 4.566 14 H 0.062 0.938 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.772 3.228 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.206 1.206 21 C 0.028 3.972 22 H 0.120 0.880 23 C -0.190 4.190 24 C -0.183 4.183 25 C -0.036 4.036 26 O -0.315 6.315 27 H 0.260 0.740 28 H 0.246 0.754 29 H 0.241 0.759 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.524 19.102 10.650 21.923 hybrid contribution 0.098 -0.856 -0.873 1.227 sum -1.427 18.246 9.777 20.750 Atomic orbital electron populations 1.25694 0.96884 0.99919 0.98038 1.23809 0.95591 1.01037 1.02270 1.17879 0.83435 0.94478 0.87330 0.87198 1.44903 1.70765 1.04403 1.17576 1.16164 0.78069 0.82655 0.83129 1.90866 1.59108 1.60006 1.41734 1.45196 1.69729 1.08742 1.14234 1.21130 0.98404 0.77630 0.98429 1.18370 0.92959 0.94607 0.89003 1.21659 0.97154 0.96634 1.02237 1.21637 0.97568 0.96545 1.01806 1.21294 1.44276 0.92166 0.98871 0.93753 1.25441 0.94917 1.01131 0.95625 1.69916 1.44966 1.34994 1.03872 0.85704 0.77594 0.81741 0.77747 1.20044 1.20820 1.20617 1.23259 0.93786 0.87088 0.93022 0.87989 1.23349 0.93540 0.97985 1.04112 1.23107 0.98430 0.95586 1.01214 1.23350 0.88134 0.92735 0.99371 1.88490 1.39510 1.48264 1.55203 0.73978 0.75351 0.75864 0.94284 0.94972 0.94673 0.91835 0.96569 0.96149 0.91959 0.94456 0.93055 0.88022 0.90352 0.88582 0.89086 0.90786 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.75 19.25 74.32 1.43 -3.32 16 2 C -0.23 -6.37 12.42 31.12 0.39 -5.99 16 3 C 0.27 6.82 2.41 43.18 0.10 6.93 16 4 H 0.11 2.92 7.58 -2.38 -0.02 2.90 16 5 N -0.72 -19.34 4.01 -466.57 -1.87 -21.21 16 6 C 0.70 25.11 8.51 179.05 1.52 26.63 16 7 O -0.64 -28.19 16.01 -4.01 -0.06 -28.25 16 8 N -0.72 -25.85 4.96 -478.54 -2.37 -28.23 16 9 C 0.17 7.36 4.50 86.38 0.39 7.75 16 10 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 11 C -0.12 -5.37 8.08 71.99 0.58 -4.79 16 12 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 13 C -0.53 -28.12 8.01 25.60 0.21 -27.91 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 15 C 0.03 1.51 5.15 84.65 0.44 1.94 16 16 N -0.90 -47.89 9.35 21.45 0.20 -47.69 16 17 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.09 1.53 3.22 31.26 0.10 1.63 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 C -0.15 -2.05 6.45 32.05 0.21 -1.84 16 24 C -0.15 -1.43 7.02 31.86 0.22 -1.21 16 25 C 0.04 0.53 7.79 72.45 0.56 1.10 16 26 O -0.39 -7.87 10.29 -148.98 -1.53 -9.40 16 27 H 0.24 4.16 7.80 -4.42 -0.03 4.12 16 28 H 0.41 9.20 7.93 -92.71 -0.74 8.46 16 29 H 0.40 12.53 6.18 -92.71 -0.57 11.95 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 33 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 37 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 38 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.24 6.77 -2.39 -0.02 1.22 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.48 356.48 2.79 -63.70 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.31 Total: 27.60 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 6.71 Total: -1.33 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -4.04 Total: -97.13 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.60 Total: -37.66 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.48 2.79 -63.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838557581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.967 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds