Wall clock time and date at job start Tue Mar 31 2020 07:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46842 * 240.00356 * 2 1 3 5 5 N 1.46498 * 109.46794 * 295.21369 * 4 2 1 6 6 N 1.28441 * 125.19564 * 276.34468 * 5 4 2 7 7 C 1.30881 * 110.94480 * 179.86170 * 6 5 4 8 8 C 1.39642 * 107.87932 * 0.40261 * 7 6 5 9 9 C 1.36650 * 125.19791 * 96.65820 * 5 4 2 10 10 C 1.47012 * 126.89249 * 0.02562 * 9 5 4 11 11 O 1.21551 * 119.99601 * 355.55984 * 10 9 5 12 12 O 1.34817 * 119.99899 * 175.56395 * 10 9 5 13 13 C 1.45200 * 117.00046 * 185.06954 * 12 10 9 14 14 C 1.52995 * 109.47488 * 184.91480 * 13 12 10 15 15 C 1.52997 * 109.47090 * 304.79721 * 14 13 12 16 16 C 1.53005 * 109.46834 * 64.79117 * 14 13 12 17 17 C 1.50701 * 109.47194 * 184.79174 * 14 13 12 18 18 H 1.07993 * 120.00038 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99842 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99796 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 120.00107 * 180.02562 * 19 17 14 22 22 H 1.48511 * 109.47020 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47210 * 119.99728 * 21 19 17 24 24 H 1.48499 * 109.47484 * 239.99924 * 21 19 17 25 25 H 1.09007 * 109.47133 * 54.94825 * 1 2 3 26 26 H 1.08998 * 109.47448 * 174.95264 * 1 2 3 27 27 H 1.09001 * 109.47130 * 294.95697 * 1 2 3 28 28 H 1.09000 * 109.46650 * 120.00292 * 2 1 3 29 29 H 1.09006 * 109.46711 * 60.00314 * 3 2 1 30 30 H 1.08998 * 109.47183 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47409 * 300.00251 * 3 2 1 32 32 H 1.08995 * 109.46964 * 55.21291 * 4 2 1 33 33 H 1.08995 * 109.46712 * 175.21283 * 4 2 1 34 34 H 1.08000 * 126.06188 * 180.15006 * 7 6 5 35 35 H 1.07999 * 127.32296 * 179.74747 * 8 7 6 36 36 H 1.09001 * 109.46981 * 304.92372 * 13 12 10 37 37 H 1.09004 * 109.46698 * 64.91196 * 13 12 10 38 38 H 1.08997 * 109.47374 * 64.75168 * 15 14 13 39 39 H 1.08997 * 109.47080 * 184.75617 * 15 14 13 40 40 H 1.09005 * 109.46859 * 304.74974 * 15 14 13 41 41 H 1.09001 * 109.46538 * 60.00194 * 16 14 13 42 42 H 1.09004 * 109.46750 * 179.97438 * 16 14 13 43 43 H 1.08996 * 109.47386 * 300.00037 * 16 14 13 44 44 H 0.97003 * 119.99841 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6480 -2.1316 -1.1931 6 7 2.2877 -3.0534 -0.5681 7 6 1.6895 -4.2100 -0.7001 8 6 0.5573 -4.0188 -1.4948 9 6 0.5491 -2.6686 -1.8026 10 6 -0.4421 -1.9562 -2.6218 11 8 -0.3721 -0.7492 -2.7474 12 8 -1.4288 -2.6416 -3.2337 13 6 -2.3036 -1.8908 -4.1165 14 6 -3.4255 -2.8019 -4.6184 15 6 -2.8189 -4.0422 -5.2776 16 6 -4.3022 -3.2284 -3.4392 17 6 -4.2647 -2.0576 -5.6249 18 1 -4.0218 -1.0371 -5.8812 19 6 -5.3425 -2.6797 -6.2185 20 7 -5.6379 -3.9227 -5.9066 21 14 -6.3822 -1.7575 -7.4666 22 1 -5.8442 -0.3843 -7.6410 23 1 -6.3450 -2.4732 -8.7672 24 1 -7.7844 -1.6816 -6.9834 25 1 -0.3634 0.5902 -0.8413 26 1 -0.3634 -1.0236 -0.0904 27 1 -0.3633 0.4336 0.9317 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6083 -0.2592 -2.1371 33 1 3.1266 -0.6475 -1.2932 34 1 2.0160 -5.1470 -0.2737 35 1 -0.1594 -4.7653 -1.8039 36 1 -2.7341 -1.0501 -3.5724 37 1 -1.7303 -1.5187 -4.9656 38 1 -2.2817 -4.6252 -4.5295 39 1 -3.6141 -4.6497 -5.7095 40 1 -2.1287 -3.7351 -6.0634 41 1 -4.7344 -2.3447 -2.9696 42 1 -5.1018 -3.8771 -3.7969 43 1 -3.6953 -3.7667 -2.7112 44 1 -6.3960 -4.3605 -6.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842758988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:46 Heat of formation + Delta-G solvation = -24.428738 kcal Electronic energy + Delta-G solvation = -24524.918017 eV Core-core repulsion = 21057.965358 eV Total energy + Delta-G solvation = -3466.952660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.60509 -39.71559 -36.94802 -36.34966 -34.87982 -32.12626 -31.46058 -30.87543 -27.31998 -26.75505 -25.96031 -25.64089 -25.19757 -23.28466 -21.86165 -20.72324 -19.77636 -18.89515 -17.85365 -16.63982 -16.43860 -15.81909 -15.56514 -15.43008 -15.13463 -14.75999 -13.96415 -13.79955 -13.66414 -13.20619 -13.12493 -12.91555 -12.76947 -12.35089 -12.12318 -11.86887 -11.53365 -11.38625 -11.22384 -11.18578 -11.03636 -11.00176 -10.87072 -10.70289 -10.45466 -10.28144 -10.13712 -9.95602 -9.46586 -9.36541 -9.21951 -9.02119 -8.79254 -8.40044 -6.04761 -4.16872 1.16738 2.21518 2.57003 3.12557 3.21259 3.24956 3.33713 3.38133 4.35643 4.36851 4.53157 4.78599 4.79966 4.91470 5.16896 5.21655 5.22714 5.30206 5.43966 5.53949 5.59351 5.71036 5.75123 5.86359 5.87463 5.98289 6.03987 6.04621 6.27112 6.40918 6.48260 6.64647 6.69399 6.93560 6.95838 7.10706 7.14476 7.36913 7.58887 7.67344 7.93259 8.03270 8.09511 8.17248 8.36208 8.83174 9.48931 10.96181 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003754 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.641281 B = 7457.626764 C = 8233.047347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.253 5.253 6 N -0.273 5.273 7 C -0.011 4.011 8 C -0.158 4.158 9 C -0.024 4.024 10 C 0.534 3.466 11 O -0.515 6.515 12 O -0.333 6.333 13 C 0.086 3.914 14 C 0.070 3.930 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.881 5.881 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.187 0.813 35 H 0.169 0.831 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.633 3.165 10.536 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.005 4.005 5 N -0.042 5.042 6 N -0.107 5.107 7 C -0.187 4.187 8 C -0.187 4.187 9 C -0.150 4.150 10 C 0.377 3.623 11 O -0.406 6.406 12 O -0.246 6.246 13 C 0.013 3.987 14 C 0.070 3.930 15 C -0.187 4.187 16 C -0.188 4.188 17 C -0.550 4.550 18 H 0.076 0.924 19 C -0.133 4.133 20 N -0.519 5.519 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.186 0.814 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.395 4.046 10.880 18.492 hybrid contribution -1.282 0.161 -1.060 1.671 sum 13.113 4.207 9.821 16.914 Atomic orbital electron populations 1.21929 0.93965 1.02340 1.02444 1.21424 0.97359 0.96636 0.96974 1.21759 1.00877 0.94677 1.02786 1.22424 1.01776 0.74312 1.02010 1.45756 1.16042 1.08593 1.33818 1.73177 1.22789 0.98058 1.16628 1.23604 0.95606 0.96356 1.03102 1.22472 1.00534 0.94180 1.01482 1.20438 0.94286 0.93984 1.06271 1.19583 0.80255 0.84940 0.77520 1.90776 1.73746 1.14824 1.61236 1.86614 1.39066 1.43001 1.55965 1.23812 0.90024 0.95371 0.89445 1.18269 0.88912 0.92330 0.93505 1.21756 0.99806 0.99067 0.98099 1.21798 1.00928 0.99934 0.96159 1.20957 1.11878 0.99030 1.23101 0.92438 1.24852 0.97023 0.94897 0.96571 1.69832 1.28115 1.11201 1.42749 0.86488 0.80138 0.79991 0.81096 1.19779 1.20934 1.20946 0.90822 0.93213 0.92724 0.90545 0.91870 0.92401 0.91871 0.86249 0.88577 0.79557 0.81382 0.92195 0.92293 0.96242 0.89601 0.95992 0.95808 0.89618 0.96503 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.92 37.16 0.29 -1.58 16 2 C -0.10 -1.10 3.13 -90.62 -0.28 -1.39 16 3 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 4 C 0.11 1.33 5.41 -4.04 -0.02 1.31 16 5 N -0.25 -3.51 3.05 -57.16 -0.17 -3.69 16 6 N -0.27 -3.70 11.90 30.58 0.36 -3.33 16 7 C -0.01 -0.14 12.03 -17.43 -0.21 -0.35 16 8 C -0.16 -2.16 10.89 -38.97 -0.42 -2.59 16 9 C -0.02 -0.38 5.73 -82.07 -0.47 -0.85 16 10 C 0.53 9.46 7.36 34.29 0.25 9.71 16 11 O -0.52 -9.40 12.00 -19.30 -0.23 -9.63 16 12 O -0.33 -6.52 8.83 -40.81 -0.36 -6.88 16 13 C 0.09 1.85 4.37 37.15 0.16 2.01 16 14 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 15 C -0.13 -3.06 8.04 37.16 0.30 -2.76 16 16 C -0.13 -3.09 8.15 37.16 0.30 -2.79 16 17 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.07 1.79 5.14 -17.82 -0.09 1.70 16 20 N -0.88 -23.55 9.33 55.43 0.52 -23.03 16 21 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.07 1.01 6.94 -51.92 -0.36 0.65 16 26 H 0.05 0.72 6.11 -51.93 -0.32 0.41 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.12 1.51 6.04 -51.93 -0.31 1.20 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.19 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.06 1.29 7.97 -51.93 -0.41 0.88 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.41 7.72 -51.93 -0.40 0.01 16 39 H 0.09 2.21 5.96 -51.93 -0.31 1.90 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.36 7.82 -51.93 -0.41 -0.05 16 44 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -28.02 351.98 -6.85 -34.86 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.03 Total: 1.38 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.22 Total: -10.47 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.71 Total: -30.05 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.59 Total: -16.51 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.02 -6.85 -34.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842758988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.434 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds