Wall clock time and date at job start Tue Mar 31 2020 07:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46842 * 240.00356 * 2 1 3 5 5 N 1.46498 * 109.46794 * 295.21369 * 4 2 1 6 6 N 1.28441 * 125.19564 * 276.34468 * 5 4 2 7 7 C 1.30881 * 110.94480 * 179.86170 * 6 5 4 8 8 C 1.39642 * 107.87932 * 0.40261 * 7 6 5 9 9 C 1.36650 * 125.19791 * 96.65820 * 5 4 2 10 10 C 1.47012 * 126.89249 * 0.02562 * 9 5 4 11 11 O 1.21551 * 119.99601 * 355.55984 * 10 9 5 12 12 O 1.34817 * 119.99899 * 175.56395 * 10 9 5 13 13 C 1.45200 * 117.00046 * 185.06954 * 12 10 9 14 14 C 1.52995 * 109.47488 * 184.91480 * 13 12 10 15 15 C 1.52997 * 109.47090 * 304.79721 * 14 13 12 16 16 C 1.53005 * 109.46834 * 64.79117 * 14 13 12 17 17 C 1.50701 * 109.47194 * 184.79174 * 14 13 12 18 18 H 1.07993 * 120.00038 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99842 * 180.02562 * 17 14 13 20 20 N 1.31513 * 119.99796 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 120.00107 * 180.02562 * 19 17 14 22 22 H 1.48511 * 109.47020 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47210 * 119.99728 * 21 19 17 24 24 H 1.48499 * 109.47484 * 239.99924 * 21 19 17 25 25 H 1.09007 * 109.47133 * 54.94825 * 1 2 3 26 26 H 1.08998 * 109.47448 * 174.95264 * 1 2 3 27 27 H 1.09001 * 109.47130 * 294.95697 * 1 2 3 28 28 H 1.09000 * 109.46650 * 120.00292 * 2 1 3 29 29 H 1.09006 * 109.46711 * 60.00314 * 3 2 1 30 30 H 1.08998 * 109.47183 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47409 * 300.00251 * 3 2 1 32 32 H 1.08995 * 109.46964 * 55.21291 * 4 2 1 33 33 H 1.08995 * 109.46712 * 175.21283 * 4 2 1 34 34 H 1.08000 * 126.06188 * 180.15006 * 7 6 5 35 35 H 1.07999 * 127.32296 * 179.74747 * 8 7 6 36 36 H 1.09001 * 109.46981 * 304.92372 * 13 12 10 37 37 H 1.09004 * 109.46698 * 64.91196 * 13 12 10 38 38 H 1.08997 * 109.47374 * 64.75168 * 15 14 13 39 39 H 1.08997 * 109.47080 * 184.75617 * 15 14 13 40 40 H 1.09005 * 109.46859 * 304.74974 * 15 14 13 41 41 H 1.09001 * 109.46538 * 60.00194 * 16 14 13 42 42 H 1.09004 * 109.46750 * 179.97438 * 16 14 13 43 43 H 1.08996 * 109.47386 * 300.00037 * 16 14 13 44 44 H 0.97003 * 119.99841 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6480 -2.1316 -1.1931 6 7 2.2877 -3.0534 -0.5681 7 6 1.6895 -4.2100 -0.7001 8 6 0.5573 -4.0188 -1.4948 9 6 0.5491 -2.6686 -1.8026 10 6 -0.4421 -1.9562 -2.6218 11 8 -0.3721 -0.7492 -2.7474 12 8 -1.4288 -2.6416 -3.2337 13 6 -2.3036 -1.8908 -4.1165 14 6 -3.4255 -2.8019 -4.6184 15 6 -2.8189 -4.0422 -5.2776 16 6 -4.3022 -3.2284 -3.4392 17 6 -4.2647 -2.0576 -5.6249 18 1 -4.0218 -1.0371 -5.8812 19 6 -5.3425 -2.6797 -6.2185 20 7 -5.6379 -3.9227 -5.9066 21 14 -6.3822 -1.7575 -7.4666 22 1 -5.8442 -0.3843 -7.6410 23 1 -6.3450 -2.4732 -8.7672 24 1 -7.7844 -1.6816 -6.9834 25 1 -0.3634 0.5902 -0.8413 26 1 -0.3634 -1.0236 -0.0904 27 1 -0.3633 0.4336 0.9317 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6083 -0.2592 -2.1371 33 1 3.1266 -0.6475 -1.2932 34 1 2.0160 -5.1470 -0.2737 35 1 -0.1594 -4.7653 -1.8039 36 1 -2.7341 -1.0501 -3.5724 37 1 -1.7303 -1.5187 -4.9656 38 1 -2.2817 -4.6252 -4.5295 39 1 -3.6141 -4.6497 -5.7095 40 1 -2.1287 -3.7351 -6.0634 41 1 -4.7344 -2.3447 -2.9696 42 1 -5.1018 -3.8771 -3.7969 43 1 -3.6953 -3.7667 -2.7112 44 1 -6.3960 -4.3605 -6.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842758988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:46 Heat of formation + Delta-G solvation = -37.537286 kcal Electronic energy + Delta-G solvation = -24525.486447 eV Core-core repulsion = 21057.965358 eV Total energy + Delta-G solvation = -3467.521089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.65584 -41.18802 -38.37972 -37.50077 -36.57009 -33.34298 -33.05673 -32.12567 -28.21381 -27.83222 -27.56344 -27.49928 -27.12461 -24.65048 -22.88803 -21.75203 -20.86933 -20.73920 -19.13912 -18.04226 -17.77624 -17.66999 -16.89149 -16.68605 -16.46120 -16.08200 -15.17598 -14.92977 -14.74870 -14.70414 -14.64716 -14.37147 -13.90895 -13.63510 -13.35268 -13.17072 -13.09000 -12.95290 -12.80866 -12.60234 -12.35275 -12.30757 -12.13436 -12.04870 -11.97962 -11.93901 -11.73346 -11.52897 -11.29364 -11.18752 -10.73583 -10.39647 -10.30610 -10.04775 -8.03999 -6.22301 -0.03738 1.07131 1.42917 1.46552 1.52654 1.55926 1.89867 1.95420 2.45830 3.19620 3.43625 3.57452 3.67297 3.89605 3.95462 4.15018 4.23074 4.26670 4.37348 4.42240 4.54894 4.59308 4.63475 4.70019 4.79507 4.84530 4.90925 4.94640 5.05146 5.06273 5.18037 5.23293 5.25813 5.28458 5.36886 5.48185 5.51703 5.63564 5.65593 5.68534 6.08628 6.18209 6.37665 6.60415 6.82769 6.98299 7.45896 8.95575 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003754 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.641281 B = 7457.626764 C = 8233.047347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.109 3.891 5 N -0.253 5.253 6 N -0.277 5.277 7 C -0.003 4.003 8 C -0.157 4.157 9 C -0.051 4.051 10 C 0.532 3.468 11 O -0.525 6.525 12 O -0.339 6.339 13 C 0.100 3.900 14 C 0.061 3.939 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.531 4.531 18 H 0.051 0.949 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.952 3.048 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.281 1.281 25 H 0.055 0.945 26 H 0.025 0.975 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.225 0.775 35 H 0.178 0.822 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.020 3.171 11.429 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.196 4.196 4 C -0.011 4.011 5 N -0.043 5.043 6 N -0.111 5.111 7 C -0.178 4.178 8 C -0.186 4.186 9 C -0.176 4.176 10 C 0.377 3.623 11 O -0.416 6.416 12 O -0.253 6.253 13 C 0.026 3.974 14 C 0.061 3.939 15 C -0.176 4.176 16 C -0.177 4.177 17 C -0.569 4.569 18 H 0.069 0.931 19 C -0.172 4.172 20 N -0.537 5.537 21 Si 0.778 3.222 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.207 1.207 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.242 0.758 35 H 0.195 0.805 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.794 4.061 11.781 20.118 hybrid contribution -1.658 0.128 -1.273 2.094 sum 14.136 4.189 10.508 18.105 Atomic orbital electron populations 1.21879 0.95694 1.00458 1.02278 1.21390 0.95713 0.98063 0.96463 1.21738 1.02019 0.92872 1.02982 1.22598 1.03083 0.73482 1.01895 1.45958 1.15517 1.09312 1.33529 1.73195 1.22881 0.98539 1.16514 1.24212 0.94429 0.97186 1.01930 1.22743 1.01130 0.93558 1.01165 1.20314 0.94904 0.94807 1.07559 1.19914 0.80048 0.85005 0.77333 1.90770 1.73913 1.15311 1.61625 1.86577 1.39642 1.42951 1.56135 1.23386 0.89755 0.94568 0.89647 1.18282 0.89609 0.92687 0.93313 1.21604 0.99016 0.98729 0.98287 1.21649 1.00383 0.99392 0.96308 1.21215 1.12696 0.99037 1.24000 0.93095 1.25494 0.97973 0.95627 0.98069 1.69942 1.28377 1.12057 1.43329 0.85606 0.78627 0.78888 0.79087 1.19651 1.20596 1.20675 0.92594 0.95597 0.91490 0.90285 0.90983 0.90557 0.92385 0.87709 0.86277 0.75823 0.80509 0.92805 0.92641 0.94795 0.91800 0.96063 0.96158 0.91723 0.95092 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 7.92 71.98 0.57 -3.04 16 2 C -0.10 -1.92 3.13 -10.79 -0.03 -1.95 16 3 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 4 C 0.11 2.40 5.41 86.38 0.47 2.87 16 5 N -0.25 -6.72 3.05 -334.74 -1.02 -7.74 16 6 N -0.28 -6.88 11.90 -57.15 -0.68 -7.56 16 7 C 0.00 -0.07 12.03 85.17 1.02 0.96 16 8 C -0.16 -4.03 10.89 22.67 0.25 -3.78 16 9 C -0.05 -1.53 5.73 40.75 0.23 -1.30 16 10 C 0.53 18.92 7.36 70.12 0.52 19.44 16 11 O -0.53 -19.47 12.00 19.67 0.24 -19.23 16 12 O -0.34 -13.26 8.83 -57.30 -0.51 -13.77 16 13 C 0.10 4.31 4.37 71.98 0.31 4.63 16 14 C 0.06 2.96 0.58 -52.93 -0.03 2.93 16 15 C -0.12 -5.60 8.04 71.98 0.58 -5.02 16 16 C -0.12 -5.69 8.15 71.98 0.59 -5.10 16 17 C -0.53 -28.03 8.01 25.60 0.21 -27.83 16 18 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 19 C 0.03 1.49 5.14 84.66 0.43 1.93 16 20 N -0.90 -48.34 9.33 21.45 0.20 -48.14 16 21 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H 0.05 1.57 6.94 -2.38 -0.02 1.55 16 26 H 0.02 0.74 6.11 -2.39 -0.01 0.73 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 2.64 6.04 -2.39 -0.01 2.63 16 33 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.05 2.36 7.97 -2.39 -0.02 2.34 16 37 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.03 1.45 7.72 -2.39 -0.02 1.43 16 39 H 0.06 3.30 5.96 -2.39 -0.01 3.29 16 40 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 3.35 6.07 -2.38 -0.01 3.33 16 43 H 0.03 1.33 7.82 -2.39 -0.02 1.31 16 44 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -59.47 351.98 7.01 -52.47 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.98 Total: 16.50 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.78 Total: -16.62 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -1.50 Total: -63.44 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.27 Total: -33.00 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -59.47 7.01 -52.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842758988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.930 kcal (2) G-P(sol) polarization free energy of solvation -59.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds