Wall clock time and date at job start Tue Mar 31 2020 07:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 O 1.45199 * 109.47075 * 300.00189 * 4 2 1 6 6 C 1.34230 * 116.99614 * 179.97438 * 5 4 2 7 7 O 1.20824 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99717 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47116 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47081 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47081 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46909 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00498 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99604 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00131 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47102 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47176 * 120.00226 * 16 14 12 19 19 H 1.48500 * 109.47343 * 240.00559 * 16 14 12 20 20 N 1.46500 * 109.47249 * 240.00447 * 2 1 3 21 21 C 1.34950 * 126.03927 * 44.70951 * 20 2 1 22 22 C 1.35308 * 107.74424 * 179.84269 * 21 20 2 23 23 C 1.39869 * 107.92354 * 0.42194 * 22 21 20 24 24 N 1.30840 * 108.20103 * 359.74479 * 23 22 21 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 33 33 H 1.09000 * 109.47303 * 300.00327 * 8 6 5 34 34 H 1.09003 * 109.46535 * 60.00663 * 8 6 5 35 35 H 1.09000 * 109.47151 * 300.00236 * 9 8 6 36 36 H 1.09003 * 109.46860 * 60.00013 * 9 8 6 37 37 H 1.09000 * 109.47007 * 299.99939 * 10 9 8 38 38 H 1.09003 * 109.47577 * 60.00068 * 10 9 8 39 39 H 1.09000 * 109.47151 * 299.99852 * 11 10 9 40 40 H 1.09003 * 109.46860 * 59.99628 * 11 10 9 41 41 H 0.97008 * 119.99970 * 179.97438 * 15 14 12 42 42 H 1.08005 * 126.12523 * 0.02562 * 21 20 2 43 43 H 1.08000 * 126.03836 * 180.16602 * 22 21 20 44 44 H 1.07996 * 125.90103 * 179.75434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.5560 -0.0368 2.4348 6 6 1.9163 -0.5472 3.6228 7 8 2.6134 -1.5329 3.6705 8 6 1.4522 0.1100 4.8972 9 6 1.9992 -0.6637 6.0985 10 6 1.5275 0.0030 7.3922 11 6 2.0740 -0.7711 8.5935 12 6 1.6099 -0.1139 9.8678 13 1 0.9872 0.7674 9.8252 14 6 1.9795 -0.6385 11.0881 15 7 2.7375 -1.7120 11.1401 16 14 1.4037 0.1756 12.6677 17 1 0.5681 1.3584 12.3389 18 1 0.6020 -0.7916 13.4594 19 1 2.5829 0.6072 13.4606 20 7 2.0184 -0.6905 -1.1962 21 6 1.5519 -0.5291 -2.4522 22 6 2.2671 -1.3405 -3.2652 23 6 3.1962 -2.0283 -2.4778 24 7 3.0480 -1.6396 -1.2373 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 1.8167 1.1367 4.9302 34 1 0.3627 0.1099 4.9300 35 1 1.6350 -1.6906 6.0657 36 1 3.0887 -0.6634 6.0654 37 1 1.8914 1.0300 7.4252 38 1 0.4380 0.0024 7.4251 39 1 1.7097 -1.7979 8.5603 40 1 3.1635 -0.7708 8.5608 41 1 2.9978 -2.0809 11.9987 42 1 0.7530 0.1318 -2.7547 43 1 2.1400 -1.4424 -4.3328 44 1 3.9124 -2.7547 -2.8324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851307452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:28 Heat of formation + Delta-G solvation = -33.082963 kcal Electronic energy + Delta-G solvation = -22791.863171 eV Core-core repulsion = 19324.535236 eV Total energy + Delta-G solvation = -3467.327935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65977 -40.51350 -37.64926 -35.81064 -34.99248 -32.69771 -30.85805 -30.14579 -29.96108 -27.92630 -27.46439 -25.67652 -23.26236 -22.49240 -21.17220 -20.58870 -20.05019 -19.77525 -17.80942 -17.07317 -16.82308 -16.27445 -16.15759 -15.57630 -14.90776 -14.81331 -14.52744 -14.37008 -13.95172 -13.82020 -13.08340 -13.06622 -12.93464 -12.70091 -12.58484 -12.57349 -12.22777 -11.83899 -11.81334 -11.67389 -11.52735 -11.03406 -10.92040 -10.78373 -10.61180 -10.56317 -10.48463 -10.39932 -9.74768 -9.66867 -9.30557 -9.02111 -8.95239 -8.32873 -5.97363 -3.99986 1.57517 1.87127 2.24910 2.55407 2.65077 3.32109 3.39418 3.43223 3.90135 4.16687 4.27856 4.44282 4.47476 4.60938 4.82076 4.99279 5.04075 5.08429 5.12917 5.21045 5.23442 5.26923 5.30000 5.38197 5.39308 5.44820 5.62207 5.67637 5.69277 5.70210 6.03195 6.16225 6.30643 6.36156 6.45042 6.67229 6.74667 6.92929 7.14617 7.39267 7.71392 7.75809 7.85843 8.03410 8.44981 9.07820 9.63904 11.13941 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.046334 B = 0.002064 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.166524 B =13562.709354 C =13944.752748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.188 3.812 3 C -0.157 4.157 4 C 0.077 3.923 5 O -0.360 6.360 6 C 0.460 3.540 7 O -0.499 6.499 8 C -0.109 4.109 9 C -0.109 4.109 10 C -0.109 4.109 11 C 0.019 3.981 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.364 5.364 21 C 0.060 3.940 22 C -0.275 4.275 23 C 0.045 3.955 24 N -0.296 5.296 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.172 0.828 43 H 0.147 0.853 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 5.572 -30.326 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 C -0.216 4.216 4 C 0.002 3.998 5 O -0.277 6.277 6 C 0.303 3.697 7 O -0.385 6.385 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 N -0.148 5.148 21 C -0.086 4.086 22 C -0.305 4.305 23 C -0.141 4.141 24 N -0.116 5.116 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.189 0.811 43 H 0.165 0.835 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.025 5.090 -28.875 29.595 hybrid contribution -0.435 0.265 -0.153 0.532 sum -4.459 5.355 -29.029 29.853 Atomic orbital electron populations 1.22246 0.91460 1.03727 1.04209 1.20507 0.95135 0.92105 0.81735 1.22252 1.02395 0.93077 1.03830 1.22772 1.00487 0.95513 0.80986 1.86407 1.70434 1.56006 1.14856 1.24252 0.77541 0.82902 0.84980 1.90704 1.34898 1.25416 1.87447 1.21620 1.03480 1.01454 0.88124 1.21592 1.01382 0.99416 0.92309 1.21647 0.99863 0.99332 0.93868 1.19107 0.96396 0.95367 0.90929 1.21306 1.31319 1.12138 0.91092 0.92628 1.25053 0.95260 0.95064 0.99266 1.69986 1.36440 1.21847 1.25142 0.86544 0.78487 0.79417 0.83585 1.19760 1.21053 1.21045 1.48837 1.27416 1.32451 1.06118 1.22431 1.00428 1.01241 0.84510 1.21519 1.02883 1.05115 1.00965 1.23931 0.99655 1.00103 0.90449 1.77422 1.06516 1.06491 1.21192 0.88836 0.91340 0.91460 0.91566 0.91559 0.89160 0.89696 0.90378 0.87794 0.87810 0.91513 0.91490 0.93182 0.93193 0.96530 0.96526 0.93073 0.81116 0.83490 0.80013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.14 37.16 0.30 -0.73 16 2 C 0.19 1.62 1.07 -131.82 -0.14 1.48 16 3 C -0.16 -1.14 8.59 37.16 0.32 -0.82 16 4 C 0.08 0.88 3.93 37.16 0.15 1.03 16 5 O -0.36 -4.17 8.88 -39.26 -0.35 -4.51 16 6 C 0.46 6.47 7.96 36.01 0.29 6.75 16 7 O -0.50 -8.85 15.73 -18.75 -0.29 -9.15 16 8 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 9 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 11 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 12 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 N -0.36 -3.48 3.43 -48.65 -0.17 -3.64 16 21 C 0.06 0.44 10.60 -17.23 -0.18 0.26 16 22 C -0.28 -2.07 10.80 -40.02 -0.43 -2.50 16 23 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16 24 N -0.30 -3.44 11.66 30.62 0.36 -3.08 16 25 H 0.09 0.58 7.68 -51.93 -0.40 0.19 16 26 H 0.07 0.31 7.36 -51.93 -0.38 -0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.61 7.68 -51.93 -0.40 0.21 16 31 H 0.08 1.10 8.04 -51.93 -0.42 0.69 16 32 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.17 0.69 7.55 -52.48 -0.40 0.30 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -34.31 370.06 -7.49 -41.80 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.45 Total: -3.60 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.88 Total: -13.53 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.93 Total: -33.36 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.64 Total: -13.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.31 -7.49 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851307452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.717 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds