Wall clock time and date at job start Tue Mar 31 2020 07:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 O 1.45199 * 109.47075 * 300.00189 * 4 2 1 6 6 C 1.34230 * 116.99614 * 179.97438 * 5 4 2 7 7 O 1.20824 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99717 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47116 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47081 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47081 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46909 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00498 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99604 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00131 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47102 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47176 * 120.00226 * 16 14 12 19 19 H 1.48500 * 109.47343 * 240.00559 * 16 14 12 20 20 N 1.46500 * 109.47249 * 240.00447 * 2 1 3 21 21 C 1.34950 * 126.03927 * 44.70951 * 20 2 1 22 22 C 1.35308 * 107.74424 * 179.84269 * 21 20 2 23 23 C 1.39869 * 107.92354 * 0.42194 * 22 21 20 24 24 N 1.30840 * 108.20103 * 359.74479 * 23 22 21 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 33 33 H 1.09000 * 109.47303 * 300.00327 * 8 6 5 34 34 H 1.09003 * 109.46535 * 60.00663 * 8 6 5 35 35 H 1.09000 * 109.47151 * 300.00236 * 9 8 6 36 36 H 1.09003 * 109.46860 * 60.00013 * 9 8 6 37 37 H 1.09000 * 109.47007 * 299.99939 * 10 9 8 38 38 H 1.09003 * 109.47577 * 60.00068 * 10 9 8 39 39 H 1.09000 * 109.47151 * 299.99852 * 11 10 9 40 40 H 1.09003 * 109.46860 * 59.99628 * 11 10 9 41 41 H 0.97008 * 119.99970 * 179.97438 * 15 14 12 42 42 H 1.08005 * 126.12523 * 0.02562 * 21 20 2 43 43 H 1.08000 * 126.03836 * 180.16602 * 22 21 20 44 44 H 1.07996 * 125.90103 * 179.75434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.5560 -0.0368 2.4348 6 6 1.9163 -0.5472 3.6228 7 8 2.6134 -1.5329 3.6705 8 6 1.4522 0.1100 4.8972 9 6 1.9992 -0.6637 6.0985 10 6 1.5275 0.0030 7.3922 11 6 2.0740 -0.7711 8.5935 12 6 1.6099 -0.1139 9.8678 13 1 0.9872 0.7674 9.8252 14 6 1.9795 -0.6385 11.0881 15 7 2.7375 -1.7120 11.1401 16 14 1.4037 0.1756 12.6677 17 1 0.5681 1.3584 12.3389 18 1 0.6020 -0.7916 13.4594 19 1 2.5829 0.6072 13.4606 20 7 2.0184 -0.6905 -1.1962 21 6 1.5519 -0.5291 -2.4522 22 6 2.2671 -1.3405 -3.2652 23 6 3.1962 -2.0283 -2.4778 24 7 3.0480 -1.6396 -1.2373 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 1.8167 1.1367 4.9302 34 1 0.3627 0.1099 4.9300 35 1 1.6350 -1.6906 6.0657 36 1 3.0887 -0.6634 6.0654 37 1 1.8914 1.0300 7.4252 38 1 0.4380 0.0024 7.4251 39 1 1.7097 -1.7979 8.5603 40 1 3.1635 -0.7708 8.5608 41 1 2.9978 -2.0809 11.9987 42 1 0.7530 0.1318 -2.7547 43 1 2.1400 -1.4424 -4.3328 44 1 3.9124 -2.7547 -2.8324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851307452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:28 Heat of formation + Delta-G solvation = -52.719837 kcal Electronic energy + Delta-G solvation = -22792.714690 eV Core-core repulsion = 19324.535236 eV Total energy + Delta-G solvation = -3468.179454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.31682 -41.59668 -38.59066 -36.81356 -36.51876 -34.66985 -31.84195 -31.37445 -30.70883 -28.57746 -28.44388 -27.26873 -24.63208 -23.52300 -22.11393 -21.73490 -21.47571 -20.44101 -18.81750 -18.42291 -17.92156 -17.81072 -17.23786 -16.49070 -16.45504 -15.98339 -15.57204 -15.16978 -14.93146 -14.58710 -14.44771 -14.10254 -13.98397 -13.61407 -13.56877 -13.48793 -13.36209 -13.14213 -13.03669 -12.86033 -12.47019 -12.33879 -12.25138 -12.21006 -12.18918 -11.86876 -11.69122 -11.51542 -11.39185 -11.29891 -11.05322 -10.55679 -10.42165 -9.55139 -8.18974 -6.30746 0.97004 1.11454 1.13009 1.40969 1.41561 1.55081 1.77541 1.95935 2.41950 3.13377 3.14149 3.47647 3.64353 3.69854 3.93444 4.00119 4.07865 4.10469 4.21463 4.24467 4.47477 4.54930 4.60791 4.64061 4.72996 4.75338 4.77127 4.78659 4.85240 4.89793 5.07721 5.13474 5.15744 5.16409 5.21520 5.32193 5.38213 5.56741 5.74278 5.77589 5.88282 6.12735 6.25102 6.64008 6.76014 6.88302 7.38970 8.93382 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.046334 B = 0.002064 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.166524 B =13562.709354 C =13944.752748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.189 3.811 3 C -0.153 4.153 4 C 0.081 3.919 5 O -0.341 6.341 6 C 0.465 3.535 7 O -0.545 6.545 8 C -0.098 4.098 9 C -0.103 4.103 10 C -0.095 4.095 11 C 0.017 3.983 12 C -0.539 4.539 13 H 0.068 0.932 14 C -0.009 4.009 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.256 1.256 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.374 5.374 21 C 0.063 3.937 22 C -0.282 4.282 23 C 0.035 3.965 24 N -0.352 5.352 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.065 0.935 39 H -0.014 1.014 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.209 0.791 43 H 0.171 0.829 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 8.316 -31.595 33.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.106 3.894 3 C -0.211 4.211 4 C 0.006 3.994 5 O -0.256 6.256 6 C 0.310 3.690 7 O -0.434 6.434 8 C -0.135 4.135 9 C -0.141 4.141 10 C -0.132 4.132 11 C -0.021 4.021 12 C -0.577 4.577 13 H 0.086 0.914 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.180 1.180 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.158 5.158 21 C -0.082 4.082 22 C -0.311 4.311 23 C -0.150 4.150 24 N -0.173 5.173 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.071 0.929 42 H 0.226 0.774 43 H 0.189 0.811 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.379 7.858 -30.173 31.825 hybrid contribution 0.330 -0.643 0.170 0.742 sum -6.048 7.215 -30.003 31.445 Atomic orbital electron populations 1.22261 0.89435 1.03559 1.05959 1.20617 0.96513 0.92180 0.80044 1.22244 1.01229 0.92258 1.05366 1.22746 0.99170 0.95273 0.82202 1.86397 1.69680 1.55237 1.14325 1.24520 0.76470 0.82068 0.85989 1.90704 1.37091 1.27550 1.88064 1.21524 1.05123 1.01664 0.85158 1.21376 1.00311 0.99017 0.93355 1.21432 1.00492 0.99106 0.92205 1.19076 0.94565 0.94705 0.93704 1.21791 1.31297 1.12532 0.92097 0.91398 1.26102 0.95280 0.95648 1.03541 1.70141 1.37869 1.23608 1.26261 0.85332 0.78154 0.78718 0.78425 1.17983 1.20587 1.20594 1.48948 1.27372 1.32473 1.07046 1.23089 1.00639 1.01106 0.83402 1.21886 1.02352 1.04757 1.02147 1.24401 1.00188 1.00260 0.90181 1.77374 1.08561 1.08521 1.22871 0.88215 0.88458 0.92569 0.93415 0.89202 0.88400 0.92067 0.92347 0.84753 0.84658 0.93325 0.93374 0.91628 0.91587 0.99606 0.99639 0.92907 0.77449 0.81109 0.78399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.14 71.98 0.59 -1.04 16 2 C 0.19 3.03 1.07 3.60 0.00 3.04 16 3 C -0.15 -1.92 8.59 71.98 0.62 -1.30 16 4 C 0.08 1.90 3.93 71.98 0.28 2.18 16 5 O -0.34 -7.56 8.88 -51.42 -0.46 -8.02 16 6 C 0.46 12.85 7.96 71.24 0.57 13.41 16 7 O -0.54 -20.13 15.73 21.97 0.35 -19.79 16 8 C -0.10 -2.29 5.81 29.85 0.17 -2.11 16 9 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 10 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 11 C 0.02 0.90 4.97 29.85 0.15 1.04 16 12 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 13 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 14 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 15 N -0.94 -58.82 13.29 21.45 0.28 -58.54 16 16 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 N -0.37 -6.84 3.43 -307.84 -1.06 -7.90 16 21 C 0.06 0.78 10.60 83.54 0.89 1.67 16 22 C -0.28 -3.76 10.80 21.99 0.24 -3.52 16 23 C 0.03 0.63 12.03 85.24 1.03 1.65 16 24 N -0.35 -8.44 11.66 -57.02 -0.66 -9.10 16 25 H 0.10 0.94 7.68 -2.39 -0.02 0.92 16 26 H 0.10 0.47 7.36 -2.39 -0.02 0.46 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.07 7.68 -2.39 -0.02 1.05 16 31 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 32 H 0.06 1.58 8.13 -2.39 -0.02 1.57 16 33 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 36 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.21 0.80 7.55 -2.91 -0.02 0.78 16 43 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -78.42 370.06 6.95 -71.47 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.95 Total: 7.85 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 5.52 Total: -22.57 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.44 Total: -75.54 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.11 Total: -27.80 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -78.42 6.95 -71.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851307452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.748 kcal (2) G-P(sol) polarization free energy of solvation -78.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds