Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.53951 * 2 1 4 4 C 1.54227 * 110.61069 * 236.98125 * 2 1 3 5 5 C 1.51316 * 103.55344 * 241.26297 * 4 2 1 6 6 O 1.21230 * 125.39474 * 180.25315 * 5 4 2 7 7 N 1.33876 * 109.20944 * 0.38080 * 5 4 2 8 8 C 1.46496 * 122.76126 * 179.84199 * 7 5 4 9 9 N 1.46903 * 109.47323 * 269.71298 * 8 7 5 10 10 C 1.46846 * 110.99807 * 278.95840 * 9 8 7 11 11 C 1.53037 * 109.52395 * 174.16000 * 10 9 8 12 12 C 1.53127 * 109.27590 * 59.17726 * 11 10 9 13 13 C 1.53117 * 109.16084 * 302.34445 * 12 11 10 14 14 H 1.08997 * 109.50464 * 297.67966 * 13 12 11 15 15 C 1.50696 * 109.50249 * 177.59707 * 13 12 11 16 16 H 1.08007 * 119.99872 * 245.67304 * 15 13 12 17 17 C 1.37872 * 120.00356 * 65.68115 * 15 13 12 18 18 N 1.31513 * 120.00296 * 198.10999 * 17 15 13 19 19 Si 1.86805 * 119.99826 * 18.10145 * 17 15 13 20 20 H 1.48503 * 109.47067 * 180.02562 * 19 17 15 21 21 H 1.48491 * 109.47135 * 60.00460 * 19 17 15 22 22 H 1.48497 * 109.47041 * 300.00337 * 19 17 15 23 23 C 1.46847 * 110.99990 * 154.74568 * 9 8 7 24 24 C 1.33879 * 114.47095 * 359.58012 * 7 5 4 25 25 O 1.21226 * 125.39033 * 180.24371 * 24 7 5 26 26 H 1.08997 * 109.47647 * 298.60838 * 1 2 3 27 27 H 1.09004 * 109.46704 * 58.60822 * 1 2 3 28 28 H 1.08999 * 109.46846 * 178.60618 * 1 2 3 29 29 H 1.09000 * 109.46858 * 181.38778 * 3 2 1 30 30 H 1.08996 * 109.47062 * 301.38849 * 3 2 1 31 31 H 1.09003 * 109.47095 * 61.39211 * 3 2 1 32 32 H 1.09000 * 110.60498 * 0.02562 * 4 2 1 33 33 H 1.09001 * 110.60673 * 122.80872 * 4 2 1 34 34 H 1.09007 * 109.46949 * 149.71540 * 8 7 5 35 35 H 1.08992 * 109.47062 * 29.71417 * 8 7 5 36 36 H 1.09001 * 109.46668 * 54.14311 * 10 9 8 37 37 H 1.09004 * 109.46393 * 294.16966 * 10 9 8 38 38 H 1.09003 * 109.50460 * 299.24201 * 11 10 9 39 39 H 1.08996 * 109.54131 * 179.13750 * 11 10 9 40 40 H 1.09005 * 109.52061 * 182.44708 * 12 11 10 41 41 H 1.08990 * 109.57699 * 62.28552 * 12 11 10 42 42 H 0.96999 * 119.99781 * 354.61237 * 18 17 15 43 43 H 1.09000 * 109.45992 * 65.82627 * 23 9 8 44 44 H 1.08996 * 109.46126 * 305.85467 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4328 0.0000 4 6 2.0729 -0.7866 -1.2104 5 6 2.8597 -1.9133 -0.5771 6 8 3.4624 -2.7748 -1.1808 7 7 2.7826 -1.8098 0.7554 8 6 3.4372 -2.7550 1.6632 9 7 2.5169 -3.8588 1.9678 10 6 1.5622 -3.4741 3.0151 11 6 0.5321 -4.5902 3.2032 12 6 1.2534 -5.8832 3.5938 13 6 2.2759 -6.2355 2.5099 14 1 1.7594 -6.4160 1.5672 15 6 3.0317 -7.4747 2.9149 16 1 4.0893 -7.4173 3.1262 17 6 2.3731 -8.6818 3.0155 18 7 2.9129 -9.6708 3.6939 19 14 0.7141 -8.9125 2.1885 20 1 0.2199 -10.2890 2.4458 21 1 0.8570 -8.7028 0.7254 22 1 -0.2536 -7.9289 2.7374 23 6 3.2554 -5.0717 2.3419 24 6 2.0625 -0.7681 1.1899 25 8 1.8677 -0.4855 2.3526 26 1 -0.3634 0.4920 0.9021 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3633 -1.0274 -0.0250 29 1 3.1564 1.4125 -0.0249 30 1 1.6931 1.9608 -0.8772 31 1 1.7335 1.9457 0.9022 32 1 1.2530 -1.1776 -1.8129 33 1 2.7254 -0.1572 -1.8156 34 1 3.7089 -2.2432 2.5865 35 1 4.3354 -3.1511 1.1895 36 1 1.0532 -2.5556 2.7230 37 1 2.0961 -3.3113 3.9514 38 1 -0.0118 -4.7443 2.2712 39 1 -0.1676 -4.3116 3.9911 40 1 0.5278 -6.6914 3.6864 41 1 1.7654 -5.7425 4.5456 42 1 3.8075 -9.5783 4.0572 43 1 3.7814 -4.9013 3.2813 44 1 3.9762 -5.3134 1.5609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -68.931087 kcal Electronic energy + Delta-G solvation = -25098.227211 eV Core-core repulsion = 21629.344785 eV Total energy + Delta-G solvation = -3468.882426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18293 -38.66695 -38.40571 -36.30845 -35.35959 -33.32752 -31.87884 -30.20129 -28.93486 -27.85759 -26.19262 -24.64283 -24.18326 -22.49321 -21.56703 -20.64698 -19.33541 -18.79314 -17.56701 -17.10095 -16.89139 -16.32433 -15.42399 -15.20222 -14.52188 -14.44558 -14.31830 -14.13981 -13.95087 -13.73491 -13.59813 -13.21403 -12.83962 -12.72657 -12.60341 -12.38356 -12.09886 -12.03366 -11.81946 -11.67895 -11.50668 -11.24229 -10.76950 -10.52914 -10.41415 -10.21322 -10.02357 -9.96397 -9.83986 -9.59576 -9.27270 -8.74133 -8.14547 -8.03572 -6.42788 -4.03062 1.44734 2.38982 2.67876 3.42394 3.48810 3.65907 3.73714 3.96631 4.08373 4.26290 4.40057 4.52990 4.69145 4.99341 5.08789 5.16355 5.21699 5.27762 5.30609 5.31008 5.37888 5.38171 5.49727 5.54848 5.62074 5.68374 5.78295 5.86131 6.01421 6.11313 6.28234 6.37339 6.46211 6.62997 6.76528 6.82710 6.93808 7.25565 7.28703 7.38215 7.43599 7.62560 7.75699 8.20590 8.40203 8.93123 9.65016 10.97611 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025238 B = 0.004244 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.177568 B = 6595.475229 C = 6760.413732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.152 4.152 5 C 0.531 3.469 6 O -0.473 6.473 7 N -0.563 5.563 8 C 0.264 3.736 9 N -0.552 5.552 10 C 0.062 3.938 11 C -0.119 4.119 12 C -0.124 4.124 13 C 0.029 3.971 14 H 0.029 0.971 15 C -0.599 4.599 16 H 0.054 0.946 17 C 0.032 3.968 18 N -0.908 5.908 19 Si 1.047 2.953 20 H -0.288 1.288 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.083 3.917 24 C 0.535 3.465 25 O -0.479 6.479 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.266 0.734 43 H 0.028 0.972 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 23.290 -8.708 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.189 4.189 4 C -0.192 4.192 5 C 0.319 3.681 6 O -0.343 6.343 7 N -0.306 5.306 8 C 0.053 3.947 9 N -0.279 5.279 10 C -0.066 4.066 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.009 3.991 14 H 0.047 0.953 15 C -0.638 4.638 16 H 0.072 0.928 17 C -0.173 4.173 18 N -0.542 5.542 19 Si 0.876 3.124 20 H -0.214 1.214 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.044 4.044 24 C 0.323 3.677 25 O -0.350 6.350 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.418 21.741 -8.978 24.138 hybrid contribution 1.830 1.159 0.997 2.385 sum -3.588 22.900 -7.980 24.515 Atomic orbital electron populations 1.21764 0.90346 1.03359 1.03604 1.21492 0.98983 0.97214 0.92587 1.21755 1.01191 0.92282 1.03708 1.22713 1.01915 0.96256 0.98315 1.20698 0.79824 0.85780 0.81795 1.90796 1.40797 1.36274 1.66453 1.46906 1.47630 1.26523 1.09546 1.22122 0.92522 0.87285 0.92758 1.61722 1.18209 1.04299 1.43651 1.22125 0.94260 0.98014 0.92168 1.21670 0.97092 0.96183 1.00701 1.22121 0.98881 0.95017 1.00180 1.18985 0.93013 0.92685 0.94367 0.95309 1.21927 0.96918 0.93096 1.51809 0.92804 1.25742 1.04775 0.92632 0.94106 1.70868 1.16501 1.36287 1.30582 0.84009 0.75751 0.75847 0.76774 1.21399 1.20936 1.19997 1.22121 0.96340 0.87782 0.98138 1.20727 0.76467 0.80106 0.90426 1.90739 1.56019 1.69069 1.19167 0.90989 0.90635 0.91612 0.91989 0.90620 0.90962 0.86077 0.86337 0.91337 0.87936 0.91664 0.95066 0.92145 0.92747 0.91949 0.93166 0.92357 0.95362 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.44 37.16 0.31 -0.61 16 2 C -0.10 -0.79 1.05 -154.71 -0.16 -0.96 16 3 C -0.13 -0.78 8.45 37.16 0.31 -0.46 16 4 C -0.15 -1.17 6.32 -26.94 -0.17 -1.34 16 5 C 0.53 6.84 8.08 -11.08 -0.09 6.75 16 6 O -0.47 -7.88 17.47 5.60 0.10 -7.78 16 7 N -0.56 -7.62 2.77 -118.62 -0.33 -7.95 16 8 C 0.26 4.10 5.42 -63.32 -0.34 3.76 16 9 N -0.55 -10.18 4.75 -238.58 -1.13 -11.31 16 10 C 0.06 1.10 5.21 -3.83 -0.02 1.08 16 11 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 12 C -0.12 -2.77 4.97 -26.61 -0.13 -2.90 16 13 C 0.03 0.70 1.84 -91.69 -0.17 0.53 16 14 H 0.03 0.73 6.79 -51.93 -0.35 0.38 16 15 C -0.60 -16.98 8.82 -34.44 -0.30 -17.29 16 16 H 0.05 1.63 7.99 -52.48 -0.42 1.21 16 17 C 0.03 0.94 5.34 -17.82 -0.10 0.85 16 18 N -0.91 -28.19 13.69 55.43 0.76 -27.43 16 19 Si 1.05 25.82 26.41 -169.99 -4.49 21.33 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.23 5.57 56.52 0.32 -5.92 16 23 C 0.08 1.75 4.62 -3.83 -0.02 1.73 16 24 C 0.53 6.56 5.97 -11.08 -0.07 6.49 16 25 O -0.48 -7.10 15.90 5.60 0.09 -7.02 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 0.77 7.74 -51.93 -0.40 0.37 16 33 H 0.12 0.63 7.74 -51.93 -0.40 0.23 16 34 H 0.07 1.03 7.61 -51.93 -0.39 0.63 16 35 H 0.10 1.58 7.38 -51.93 -0.38 1.19 16 36 H 0.06 1.11 5.65 -51.93 -0.29 0.81 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.46 4.86 -51.93 -0.25 1.20 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -33.45 343.38 -8.14 -41.59 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.20 Total: -1.86 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.10 Total: -4.74 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.70 Total: -46.69 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.19 Total: -14.80 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.49 Total: 21.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.45 -8.14 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.342 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds