Wall clock time and date at job start Tue Mar 31 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.53951 * 2 1 4 4 C 1.54227 * 110.61069 * 236.98125 * 2 1 3 5 5 C 1.51316 * 103.55344 * 241.26297 * 4 2 1 6 6 O 1.21230 * 125.39474 * 180.25315 * 5 4 2 7 7 N 1.33876 * 109.20944 * 0.38080 * 5 4 2 8 8 C 1.46496 * 122.76126 * 179.84199 * 7 5 4 9 9 N 1.46903 * 109.47323 * 269.71298 * 8 7 5 10 10 C 1.46846 * 110.99807 * 278.95840 * 9 8 7 11 11 C 1.53037 * 109.52395 * 174.16000 * 10 9 8 12 12 C 1.53127 * 109.27590 * 59.17726 * 11 10 9 13 13 C 1.53117 * 109.16084 * 302.34445 * 12 11 10 14 14 H 1.08997 * 109.50464 * 297.67966 * 13 12 11 15 15 C 1.50696 * 109.50249 * 177.59707 * 13 12 11 16 16 H 1.08007 * 119.99872 * 245.67304 * 15 13 12 17 17 C 1.37872 * 120.00356 * 65.68115 * 15 13 12 18 18 N 1.31513 * 120.00296 * 198.10999 * 17 15 13 19 19 Si 1.86805 * 119.99826 * 18.10145 * 17 15 13 20 20 H 1.48503 * 109.47067 * 180.02562 * 19 17 15 21 21 H 1.48491 * 109.47135 * 60.00460 * 19 17 15 22 22 H 1.48497 * 109.47041 * 300.00337 * 19 17 15 23 23 C 1.46847 * 110.99990 * 154.74568 * 9 8 7 24 24 C 1.33879 * 114.47095 * 359.58012 * 7 5 4 25 25 O 1.21226 * 125.39033 * 180.24371 * 24 7 5 26 26 H 1.08997 * 109.47647 * 298.60838 * 1 2 3 27 27 H 1.09004 * 109.46704 * 58.60822 * 1 2 3 28 28 H 1.08999 * 109.46846 * 178.60618 * 1 2 3 29 29 H 1.09000 * 109.46858 * 181.38778 * 3 2 1 30 30 H 1.08996 * 109.47062 * 301.38849 * 3 2 1 31 31 H 1.09003 * 109.47095 * 61.39211 * 3 2 1 32 32 H 1.09000 * 110.60498 * 0.02562 * 4 2 1 33 33 H 1.09001 * 110.60673 * 122.80872 * 4 2 1 34 34 H 1.09007 * 109.46949 * 149.71540 * 8 7 5 35 35 H 1.08992 * 109.47062 * 29.71417 * 8 7 5 36 36 H 1.09001 * 109.46668 * 54.14311 * 10 9 8 37 37 H 1.09004 * 109.46393 * 294.16966 * 10 9 8 38 38 H 1.09003 * 109.50460 * 299.24201 * 11 10 9 39 39 H 1.08996 * 109.54131 * 179.13750 * 11 10 9 40 40 H 1.09005 * 109.52061 * 182.44708 * 12 11 10 41 41 H 1.08990 * 109.57699 * 62.28552 * 12 11 10 42 42 H 0.96999 * 119.99781 * 354.61237 * 18 17 15 43 43 H 1.09000 * 109.45992 * 65.82627 * 23 9 8 44 44 H 1.08996 * 109.46126 * 305.85467 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0669 1.4328 0.0000 4 6 2.0729 -0.7866 -1.2104 5 6 2.8597 -1.9133 -0.5771 6 8 3.4624 -2.7748 -1.1808 7 7 2.7826 -1.8098 0.7554 8 6 3.4372 -2.7550 1.6632 9 7 2.5169 -3.8588 1.9678 10 6 1.5622 -3.4741 3.0151 11 6 0.5321 -4.5902 3.2032 12 6 1.2534 -5.8832 3.5938 13 6 2.2759 -6.2355 2.5099 14 1 1.7594 -6.4160 1.5672 15 6 3.0317 -7.4747 2.9149 16 1 4.0893 -7.4173 3.1262 17 6 2.3731 -8.6818 3.0155 18 7 2.9129 -9.6708 3.6939 19 14 0.7141 -8.9125 2.1885 20 1 0.2199 -10.2890 2.4458 21 1 0.8570 -8.7028 0.7254 22 1 -0.2536 -7.9289 2.7374 23 6 3.2554 -5.0717 2.3419 24 6 2.0625 -0.7681 1.1899 25 8 1.8677 -0.4855 2.3526 26 1 -0.3634 0.4920 0.9021 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3633 -1.0274 -0.0250 29 1 3.1564 1.4125 -0.0249 30 1 1.6931 1.9608 -0.8772 31 1 1.7335 1.9457 0.9022 32 1 1.2530 -1.1776 -1.8129 33 1 2.7254 -0.1572 -1.8156 34 1 3.7089 -2.2432 2.5865 35 1 4.3354 -3.1511 1.1895 36 1 1.0532 -2.5556 2.7230 37 1 2.0961 -3.3113 3.9514 38 1 -0.0118 -4.7443 2.2712 39 1 -0.1676 -4.3116 3.9911 40 1 0.5278 -6.6914 3.6864 41 1 1.7654 -5.7425 4.5456 42 1 3.8075 -9.5783 4.0572 43 1 3.7814 -4.9013 3.2813 44 1 3.9762 -5.3134 1.5609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:05 Heat of formation + Delta-G solvation = -92.361037 kcal Electronic energy + Delta-G solvation = -25099.243210 eV Core-core repulsion = 21629.344785 eV Total energy + Delta-G solvation = -3469.898425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.13810 -39.97779 -39.72083 -37.22122 -36.57796 -35.12905 -33.55981 -32.03406 -29.77375 -28.30995 -27.38347 -26.63768 -25.20259 -23.96129 -23.05732 -21.82364 -20.59984 -20.23567 -19.69012 -18.21679 -18.03516 -17.29374 -16.66785 -16.31828 -15.97422 -15.83130 -15.42974 -15.25214 -15.17180 -15.02150 -14.64070 -14.62480 -14.47398 -13.99149 -13.95161 -13.48955 -13.25606 -13.04985 -12.85810 -12.65872 -12.60242 -12.41719 -12.34033 -12.03381 -11.87025 -11.81752 -11.54427 -11.39842 -11.26007 -11.00054 -10.93941 -10.77430 -10.37208 -9.55113 -8.77498 -6.38426 0.48645 1.37504 1.43582 1.51848 1.71625 1.72291 2.46359 2.82240 3.00629 3.04745 3.21673 3.41892 3.75574 3.82584 3.88161 4.04356 4.06591 4.11713 4.14784 4.31062 4.41424 4.48760 4.60958 4.67090 4.69091 4.70442 4.80077 4.82968 4.85754 4.90519 4.93497 5.04231 5.10356 5.14945 5.26088 5.32774 5.42207 5.65456 5.70234 5.80649 5.94713 6.01311 6.15926 6.31748 6.55823 6.73673 7.38276 8.61913 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025238 B = 0.004244 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.177568 B = 6595.475229 C = 6760.413732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.136 4.136 5 C 0.524 3.476 6 O -0.519 6.519 7 N -0.569 5.569 8 C 0.264 3.736 9 N -0.556 5.556 10 C 0.067 3.933 11 C -0.111 4.111 12 C -0.120 4.120 13 C 0.027 3.973 14 H 0.024 0.976 15 C -0.603 4.603 16 H 0.017 0.983 17 C -0.017 4.017 18 N -0.939 5.939 19 Si 1.084 2.916 20 H -0.289 1.289 21 H -0.270 1.270 22 H -0.240 1.240 23 C 0.095 3.905 24 C 0.528 3.472 25 O -0.509 6.509 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.251 0.749 43 H 0.020 0.980 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 26.455 -10.656 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.187 4.187 4 C -0.175 4.175 5 C 0.315 3.685 6 O -0.393 6.393 7 N -0.312 5.312 8 C 0.052 3.948 9 N -0.283 5.283 10 C -0.060 4.060 11 C -0.149 4.149 12 C -0.158 4.158 13 C 0.008 3.992 14 H 0.042 0.958 15 C -0.642 4.642 16 H 0.035 0.965 17 C -0.215 4.215 18 N -0.575 5.575 19 Si 0.906 3.094 20 H -0.215 1.215 21 H -0.195 1.195 22 H -0.165 1.165 23 C -0.033 4.033 24 C 0.318 3.682 25 O -0.382 6.382 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.938 24.969 -10.928 28.388 hybrid contribution 2.740 0.220 1.640 3.201 sum -5.198 25.190 -9.288 27.346 Atomic orbital electron populations 1.21821 0.89088 1.03125 1.04935 1.21593 0.99720 0.97735 0.89996 1.21813 1.01268 0.90697 1.04931 1.22845 1.02181 0.94244 0.98200 1.21661 0.79152 0.86284 0.81378 1.90776 1.42923 1.38500 1.67090 1.47078 1.47859 1.26417 1.09837 1.22003 0.92229 0.86995 0.93546 1.61657 1.18602 1.04264 1.43753 1.22100 0.93890 0.98196 0.91811 1.21622 0.97286 0.94158 1.01819 1.21965 0.98197 0.96908 0.98704 1.18922 0.93639 0.91994 0.94651 0.95765 1.22172 0.95624 0.95355 1.51003 0.96476 1.27152 1.08192 0.92317 0.93816 1.70995 1.16188 1.37444 1.32844 0.83569 0.72588 0.76609 0.76647 1.21477 1.19520 1.16499 1.21779 0.95525 0.88519 0.97455 1.21624 0.75531 0.79665 0.91353 1.90719 1.56971 1.69668 1.20805 0.91650 0.87259 0.92734 0.91993 0.87345 0.91701 0.83818 0.83045 0.90941 0.88496 0.90302 0.95503 0.91617 0.90004 0.92758 0.94377 0.93960 0.96192 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.44 71.98 0.61 -0.69 16 2 C -0.09 -1.07 1.05 -52.31 -0.06 -1.13 16 3 C -0.13 -0.99 8.45 71.98 0.61 -0.38 16 4 C -0.14 -1.54 6.32 30.46 0.19 -1.35 16 5 C 0.52 12.60 8.08 87.99 0.71 13.31 16 6 O -0.52 -17.04 17.47 -2.87 -0.05 -17.09 16 7 N -0.57 -14.70 2.77 -767.03 -2.13 -16.82 16 8 C 0.26 8.19 5.42 170.81 0.93 9.11 16 9 N -0.56 -20.27 4.75 -908.72 -4.32 -24.59 16 10 C 0.07 2.30 5.21 86.33 0.45 2.75 16 11 C -0.11 -3.89 6.09 30.65 0.19 -3.70 16 12 C -0.12 -5.24 4.97 30.68 0.15 -5.09 16 13 C 0.03 1.34 1.84 -11.49 -0.02 1.32 16 14 H 0.02 1.21 6.79 -2.39 -0.02 1.20 16 15 C -0.60 -35.40 8.82 25.60 0.23 -35.18 16 16 H 0.02 1.09 7.99 -2.91 -0.02 1.07 16 17 C -0.02 -1.00 5.34 84.65 0.45 -0.55 16 18 N -0.94 -60.22 13.69 21.45 0.29 -59.92 16 19 Si 1.08 51.67 26.41 68.60 1.81 53.48 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.24 -10.15 5.57 99.48 0.55 -9.60 16 23 C 0.09 4.09 4.62 86.33 0.40 4.49 16 24 C 0.53 11.89 5.97 87.99 0.53 12.42 16 25 O -0.51 -14.36 15.90 -2.86 -0.05 -14.41 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.14 1.11 7.74 -2.39 -0.02 1.09 16 33 H 0.15 0.81 7.74 -2.39 -0.02 0.80 16 34 H 0.07 2.18 7.61 -2.38 -0.02 2.16 16 35 H 0.10 3.08 7.38 -2.39 -0.02 3.06 16 36 H 0.08 2.52 5.65 -2.39 -0.01 2.50 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 2.44 4.86 -2.38 -0.01 2.43 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 2.59 7.91 -2.39 -0.02 2.57 16 Total: -1.00 -76.35 343.38 1.72 -74.63 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.79 Total: 9.39 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 5.36 Total: -4.66 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -6.15 Total: -101.34 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.10 Total: -31.50 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 1.81 Total: 53.48 kcal Total: -76.35 1.72 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.726 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds